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Laura Igual, Joan Carles Soliva, Antonio Hernandez, Sergio Escalera, Oscar Vilarroya, & Petia Radeva. (2012). Supervised Brain Segmentation and Classification in Diagnostic of Attention-Deficit/Hyperactivity Disorder. In High Performance Computing and Simulation, International Conference on (pp. 182–187). IEEE Xplore.
Abstract: This paper presents an automatic method for external and internal segmentation of the caudate nucleus in Magnetic Resonance Images (MRI) based on statistical and structural machine learning approaches. This method is applied in Attention-Deficit/Hyperactivity Disorder (ADHD) diagnosis. The external segmentation method adapts the Graph Cut energy-minimization model to make it suitable for segmenting small, low-contrast structures, such as the caudate nucleus. In particular, new energy function data and boundary potentials are defined and a supervised energy term based on contextual brain structures is added. Furthermore, the internal segmentation method learns a classifier based on shape features of the Region of Interest (ROI) in MRI slices. The results show accurate external and internal caudate segmentation in a real data set and similar performance of ADHD diagnostic test to manual annotation.
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Laura Igual, Joan Carles Soliva, Antonio Hernandez, Sergio Escalera, Oscar Vilarroya, & Petia Radeva. (2012). A Supervised Graph-cut Deformable Model for Brain MRI Segmentation. Deformation models: tracking, animation and applications. In Computational Vision and Biomechanics. LNCS. Springer Netherlands.
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Laura Igual, Joan Carles Soliva, Antonio Hernandez, Sergio Escalera, Xavier Jimenez, Oscar Vilarroya, et al. (2011). A fully-automatic caudate nucleus segmentation of brain MRI: Application in volumetric analysis of pediatric attention-deficit/hyperactivity disorder. BEO - BioMedical Engineering Online, 10(105), 1–23.
Abstract: Background
Accurate automatic segmentation of the caudate nucleus in magnetic resonance images (MRI) of the brain is of great interest in the analysis of developmental disorders. Segmentation methods based on a single atlas or on multiple atlases have been shown to suitably localize caudate structure. However, the atlas prior information may not represent the structure of interest correctly. It may therefore be useful to introduce a more flexible technique for accurate segmentations.
Method
We present Cau-dateCut: a new fully-automatic method of segmenting the caudate nucleus in MRI. CaudateCut combines an atlas-based segmentation strategy with the Graph Cut energy-minimization framework. We adapt the Graph Cut model to make it suitable for segmenting small, low-contrast structures, such as the caudate nucleus, by defining new energy function data and boundary potentials. In particular, we exploit information concerning the intensity and geometry, and we add supervised energies based on contextual brain structures. Furthermore, we reinforce boundary detection using a new multi-scale edgeness measure.
Results
We apply the novel CaudateCut method to the segmentation of the caudate nucleus to a new set of 39 pediatric attention-deficit/hyperactivity disorder (ADHD) patients and 40 control children, as well as to a public database of 18 subjects. We evaluate the quality of the segmentation using several volumetric and voxel by voxel measures. Our results show improved performance in terms of segmentation compared to state-of-the-art approaches, obtaining a mean overlap of 80.75%. Moreover, we present a quantitative volumetric analysis of caudate abnormalities in pediatric ADHD, the results of which show strong correlation with expert manual analysis.
Conclusion
CaudateCut generates segmentation results that are comparable to gold-standard segmentations and which are reliable in the analysis of differentiating neuroanatomical abnormalities between healthy controls and pediatric ADHD.
Keywords: Brain caudate nucleus; segmentation; MRI; atlas-based strategy; Graph Cut framework
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Laura Igual, Joan Carles Soliva, Roger Gimeno, Sergio Escalera, Oscar Vilarroya, & Petia Radeva. (2012). Automatic Internal Segmentation of Caudate Nucleus for Diagnosis of Attention Deficit Hyperactivity Disorder. In 9th International Conference on Image Analysis and Recognition (Vol. 7325, pp. 222–229). LNCS.
Abstract: Poster
Studies on volumetric brain Magnetic Resonance Imaging (MRI) showed neuroanatomical abnormalities in pediatric Attention-Deficit/Hyperactivity Disorder (ADHD). In particular, the diminished right caudate volume is one of the most replicated findings among ADHD samples in morphometric MRI studies. In this paper, we propose a fully-automatic method for internal caudate nucleus segmentation based on machine learning. Moreover, the ratio between right caudate body volume and the bilateral caudate body volume is applied in a ADHD diagnostic test. We separately validate the automatic internal segmentation of caudate in head and body structures and the diagnostic test using real data from ADHD and control subjects. As a result, we show accurate internal caudate segmentation and similar performance among the proposed automatic diagnostic test and the manual annotation.
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Laura Igual, Joan Carles Soliva, Sergio Escalera, Roger Gimeno, Oscar Vilarroya, & Petia Radeva. (2012). Automatic Brain Caudate Nuclei Segmentation and Classification in Diagnostic of Attention-Deficit/Hyperactivity Disorder. CMIG - Computerized Medical Imaging and Graphics, 36(8), 591–600.
Abstract: We present a fully automatic diagnostic imaging test for Attention-Deficit/Hyperactivity Disorder diagnosis assistance based on previously found evidences of caudate nucleus volumetric abnormalities. The proposed method consists of different steps: a new automatic method for external and internal segmentation of caudate based on Machine Learning methodologies; the definition of a set of new volume relation features, 3D Dissociated Dipoles, used for caudate representation and classification. We separately validate the contributions using real data from a pediatric population and show precise internal caudate segmentation and discrimination power of the diagnostic test, showing significant performance improvements in comparison to other state-of-the-art methods.
Keywords: Automatic caudate segmentation; Attention-Deficit/Hyperactivity Disorder; Diagnostic test; Machine learning; Decision stumps; Dissociated dipoles
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Laura Igual, & Santiago Segui. (2017). Introduction to Data Science – A Python Approach to Concepts, Techniques and Applications. Undergraduate Topics in Computer Science. 978-3-319-50016-4.
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Laura Igual, Santiago Segui, Jordi Vitria, Fernando Azpiroz, & Petia Radeva. (2007). Eigenmotion-Based Detection of Intestinal Contractions. In Computer Analysis of Images and Patterns, 12th International Conference (Vol. 4673, 293–300). LNCS.
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Laura Igual, Santiago Segui, Jordi Vitria, Fernando Azpiroz, & Petia Radeva. (2007). Sparse Bayesian Feature Selection Applied to Intestinal Motility Analysis. In XVI Congreso Argentino de Bioingenieria (467–470).
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Laura Igual, & Xavier Baro. (2013). Experiencia de aprendizaje de programación basada en proyectos. Simposio-Taller Estrategias y herramientas para el aprendizaje y la evaluación.
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Laura Igual, Xavier Perez Sala, Sergio Escalera, Cecilio Angulo, & Fernando De la Torre. (2014). Continuous Generalized Procrustes Analysis. PR - Pattern Recognition, 47(2), 659–671.
Abstract: PR4883, PII: S0031-3203(13)00327-0
Two-dimensional shape models have been successfully applied to solve many problems in computer vision, such as object tracking, recognition, and segmentation. Typically, 2D shape models are learned from a discrete set of image landmarks (corresponding to projection of 3D points of an object), after applying Generalized Procustes Analysis (GPA) to remove 2D rigid transformations. However, the
standard GPA process suffers from three main limitations. Firstly, the 2D training samples do not necessarily cover a uniform sampling of all the 3D transformations of an object. This can bias the estimate of the shape model. Secondly, it can be computationally expensive to learn the shape model by sampling 3D transformations. Thirdly, standard GPA methods use only one reference shape, which can might be insufficient to capture large structural variability of some objects.
To address these drawbacks, this paper proposes continuous generalized Procrustes analysis (CGPA).
CGPA uses a continuous formulation that avoids the need to generate 2D projections from all the rigid 3D transformations. It builds an efficient (in space and time) non-biased 2D shape model from a set of 3D model of objects. A major challenge in CGPA is the need to integrate over the space of 3D rotations, especially when the rotations are parameterized with Euler angles. To address this problem, we introduce the use of the Haar measure. Finally, we extended CGPA to incorporate several reference shapes. Experimental results on synthetic and real experiments show the benefits of CGPA over GPA.
Keywords: Procrustes analysis; 2D shape model; Continuous approach
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Laura Lopez-Fuentes, Alessandro Farasin, Harald Skinnemoen, & Paolo Garza. (2018). Deep Learning models for passability detection of flooded roads. In MediaEval 2018 Multimedia Benchmark Workshop (Vol. 2283).
Abstract: In this paper we study and compare several approaches to detect floods and evidence for passability of roads by conventional means in Twitter. We focus on tweets containing both visual information (a picture shared by the user) and metadata, a combination of text and related extra information intrinsic to the Twitter API. This work has been done in the context of the MediaEval 2018 Multimedia Satellite Task.
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Laura Lopez-Fuentes, Andrew Bagdanov, Joost Van de Weijer, & Harald Skinnemoen. (2017). Bandwidth Limited Object Recognition in High Resolution Imagery. In IEEE Winter conference on Applications of Computer Vision.
Abstract: This paper proposes a novel method to optimize bandwidth usage for object detection in critical communication scenarios. We develop two operating models of active information seeking. The first model identifies promising regions in low resolution imagery and progressively requests higher resolution regions on which to perform recognition of higher semantic quality. The second model identifies promising regions in low resolution imagery while simultaneously predicting the approximate location of the object of higher semantic quality. From this general framework, we develop a car recognition system via identification of its license plate and evaluate the performance of both models on a car dataset that we introduce. Results are compared with traditional JPEG compression and demonstrate that our system saves up to one order of magnitude of bandwidth while sacrificing little in terms of recognition performance.
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Laura Lopez-Fuentes, Claudio Rossi, & Harald Skinnemoen. (2017). River segmentation for flood monitoring. In Data Science for Emergency Management at Big Data 2017.
Abstract: Floods are major natural disasters which cause deaths and material damages every year. Monitoring these events is crucial in order to reduce both the affected people and the economic losses. In this work we train and test three different Deep Learning segmentation algorithms to estimate the water area from river images, and compare their performances. We discuss the implementation of a novel data chain aimed to monitor river water levels by automatically process data collected from surveillance cameras, and to give alerts in case of high increases of the water level or flooding. We also create and openly publish the first image dataset for river water segmentation.
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Laura Lopez-Fuentes, Joost Van de Weijer, Manuel Gonzalez-Hidalgo, Harald Skinnemoen, & Andrew Bagdanov. (2018). Review on computer vision techniques in emergency situations. MTAP - Multimedia Tools and Applications, 77(13), 17069–17107.
Abstract: In emergency situations, actions that save lives and limit the impact of hazards are crucial. In order to act, situational awareness is needed to decide what to do. Geolocalized photos and video of the situations as they evolve can be crucial in better understanding them and making decisions faster. Cameras are almost everywhere these days, either in terms of smartphones, installed CCTV cameras, UAVs or others. However, this poses challenges in big data and information overflow. Moreover, most of the time there are no disasters at any given location, so humans aiming to detect sudden situations may not be as alert as needed at any point in time. Consequently, computer vision tools can be an excellent decision support. The number of emergencies where computer vision tools has been considered or used is very wide, and there is a great overlap across related emergency research. Researchers tend to focus on state-of-the-art systems that cover the same emergency as they are studying, obviating important research in other fields. In order to unveil this overlap, the survey is divided along four main axes: the types of emergencies that have been studied in computer vision, the objective that the algorithms can address, the type of hardware needed and the algorithms used. Therefore, this review provides a broad overview of the progress of computer vision covering all sorts of emergencies.
Keywords: Emergency management; Computer vision; Decision makers; Situational awareness; Critical situation
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Laura Lopez-Fuentes, Joost Van de Weijer, Marc Bolaños, & Harald Skinnemoen. (2017). Multi-modal Deep Learning Approach for Flood Detection. In MediaEval Benchmarking Initiative for Multimedia Evaluation.
Abstract: In this paper we propose a multi-modal deep learning approach to detect floods in social media posts. Social media posts normally contain some metadata and/or visual information, therefore in order to detect the floods we use this information. The model is based on a Convolutional Neural Network which extracts the visual features and a bidirectional Long Short-Term Memory network to extract the semantic features from the textual metadata. We validate the
method on images extracted from Flickr which contain both visual information and metadata and compare the results when using both, visual information only or metadata only. This work has been done in the context of the MediaEval Multimedia Satellite Task.
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