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	Author	Carles Sanchez; Debora Gil; Antoni Rosell; Albert Andaluz; F. Javier Sanchez
	Title	Segmentation of Tracheal Rings in Videobronchoscopy combining Geometry and Appearance			Type	Conference Article
	Year	2013	Publication	Proceedings of the International Conference on Computer Vision Theory and Applications	Abbreviated Journal
	Volume	1	Issue		Pages	153--161
	Keywords	Video-bronchoscopy, tracheal ring segmentation, trachea geometric and appearance model
	Abstract	Videobronchoscopy is a medical imaging technique that allows interactive navigation inside the respiratory pathways and minimal invasive interventions. Tracheal procedures are ordinary interventions that require measurement of the percentage of obstructed pathway for injury (stenosis) assessment. Visual assessment of stenosis in videobronchoscopic sequences requires high expertise of trachea anatomy and is prone to human error. Accurate detection of tracheal rings is the basis for automated estimation of the size of stenosed trachea. Processing of videobronchoscopic images acquired at the operating room is a challenging task due to the wide range of artifacts and acquisition conditions. We present a model of the geometric-appearance of tracheal rings for its detection in videobronchoscopic videos. Experiments on sequences acquired at the operating room, show a performance close to inter-observer variability
	Address	Barcelona; February 2013
	Corporate Author				Thesis
	Publisher	SciTePress	Place of Publication	Portugal	Editor	Sebastiano Battiato and José Braz
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title	LNCS
	Series Volume		Series Issue		Edition
	ISSN		ISBN	978-989-8565-47-1	Medium
	Area	800	Expedition		Conference	VISAPP
	Notes	IAM;MV; 600.044; 600.047; 600.060; 605.203			Approved	no
	Call Number	IAM @ iam @ SGR2013			Serial	2123
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	Author	Carles Sanchez; Jorge Bernal; Debora Gil; F. Javier Sanchez
	Title	On-line lumen centre detection in gastrointestinal and respiratory endoscopy			Type	Conference Article
	Year	2013	Publication	Second International Workshop Clinical Image-Based Procedures	Abbreviated Journal
	Volume	8361	Issue		Pages	31-38
	Keywords	Lumen centre detection; Bronchoscopy; Colonoscopy
	Abstract	We present in this paper a novel lumen centre detection for gastrointestinal and respiratory endoscopic images. The proposed method is based on the appearance and geometry of the lumen, which we defined as the darkest image region which centre is a hub of image gradients. Experimental results validated on the first public annotated gastro-respiratory database prove the reliability of the method for a wide range of images (with precision over 95 %).
	Address	Nagoya; Japan; September 2013
	Corporate Author				Thesis
	Publisher	Springer International Publishing	Place of Publication		Editor	Erdt, Marius and Linguraru, Marius George and Oyarzun Laura, Cristina and Shekhar, Raj and Wesarg, Stefan and González Ballester, Miguel Angel and Drechsler, Klaus
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title	LNCS
	Series Volume		Series Issue		Edition
	ISSN		ISBN	978-3-319-05665-4	Medium
	Area	800	Expedition		Conference	CLIP
	Notes	MV; IAM; 600.047; 600.044; 600.060			Approved	no
	Call Number	Admin @ si @ SBG2013			Serial	2302
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	Author	Carles Sanchez;F. Javier Sanchez; Antoni Rosell; Debora Gil
	Title	An illumination model of the trachea appearance in videobronchoscopy images			Type	Book Chapter
	Year	2012	Publication	Image Analysis and Recognition	Abbreviated Journal	LNCS
	Volume	7325	Issue		Pages	313-320
	Keywords	Bronchoscopy, tracheal ring, stenosis assesment, trachea appearance model, segmentation
	Abstract	Videobronchoscopy is a medical imaging technique that allows interactive navigation inside the respiratory pathways. This imaging modality provides realistic images and allows non-invasive minimal intervention procedures. Tracheal procedures are routinary interventions that require assessment of the percentage of obstructed pathway for injury (stenosis) detection. Visual assessment in videobronchoscopic sequences requires high expertise of trachea anatomy and is prone to human error. This paper introduces an automatic method for the estimation of steneosed trachea percentage reduction in videobronchoscopic images. We look for tracheal rings , whose deformation determines the degree of obstruction. For ring extraction , we present a ring detector based on an illumination and appearance model. This model allows us to parametrise the ring detection. Finally, we can infer optimal estimation parameters for any video resolution.
	Address	Aveiro, Portugal
	Corporate Author				Thesis
	Publisher	Springer Berlin Heidelberg	Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title	Lecture Notes in Computer Science	Abbreviated Series Title	LNCS
	Series Volume		Series Issue		Edition
	ISSN	0302-9743	ISBN	978-3-642-31297-7	Medium
	Area	800	Expedition		Conference	ICIAR
	Notes	MV;IAM			Approved	no
	Call Number	IAM @ iam @ SSR2012			Serial	1898
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	Author	Farhan Riaz; Fernando Vilariño; Mario Dinis-Ribeiro; Miguel Coimbraln
	Title	Identifying Potentially Cancerous Tissues in Chromoendoscopy Images			Type	Conference Article
	Year	2011	Publication	5th Iberian Conference on Pattern Recognition and Image Analysis	Abbreviated Journal
	Volume	6669	Issue		Pages	709-716
	Keywords	Endoscopy, Computer Assisted Diagnosis, Gradient.
	Abstract	The dynamics of image acquisition conditions for gastroenterology imaging scenarios pose novel challenges for automatic computer assisted decision systems. Such systems should have the ability to mimic the tissue characterization of the physicians. In this paper, our objective is to compare some feature extraction methods to classify a Chromoendoscopy image into two different classes: Normal and Potentially cancerous. Results show that LoG filters generally give best classification accuracy among the other feature extraction methods considered.
	Address	Las Palmas de Gran Canaria. Spain
	Corporate Author				Thesis
	Publisher	Springer	Place of Publication	Berlin	Editor	J. Vitria, J.M. Sanches, and M. Hernandez
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title	LNCS
	Series Volume		Series Issue		Edition
	ISSN		ISBN	978-3-642-21256-7	Medium
	Area	800	Expedition		Conference	IbPRIA
	Notes	MV;SIAI			Approved	no
	Call Number	Admin @ si @ RVD2011; IAM @ iam @ RVD2011			Serial	1726
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	Author	Fernando Vilariño
	Title	A Machine Learning Approach for Intestinal Motility Assessment with Capsule Endoscopy			Type	Book Whole
	Year	2006	Publication	PhD Thesis, Universitat Autonoma de Barcelona-CVC	Abbreviated Journal
	Volume		Issue		Pages
	Keywords
	Abstract	Intestinal motility assessment with video capsule endoscopy arises as a novel and challenging clinical fieldwork. This technique is based on the analysis of the patterns of intestinal contractions obtained by labelling all the motility events present in a video provided by a capsule with a wireless micro-camera, which is ingested by the patient. However, the visual analysis of these video sequences presents several im- portant drawbacks, mainly related to both the large amount of time needed for the visualization process, and the low prevalence of intestinal contractions in video. In this work we propose a machine learning system to automatically detect the intestinal contractions in video capsule endoscopy, driving a very useful but not fea- sible clinical routine into a feasible clinical procedure. Our proposal is divided into two different parts: The first part tackles the problem of the automatic detection of phasic contractions in capsule endoscopy videos. Phasic contractions are dynamic events spanning about 4-5 seconds, which show visual patterns with a high variability. Our proposal is based on a sequential design which involves the analysis of textural, color and blob features with powerful classifiers such as SVM. This approach appears to cope with two basic aims: the reduction of the imbalance rate of the data set, and the modular construction of the system, which adds the capability of including domain knowledge as new stages in the cascade. The second part of the current work tackles the problem of the automatic detection of tonic contractions. Tonic contrac- tions manifest in capsule endoscopy as a sustained pattern of the folds and wrinkles of the intestine, which may be prolonged for an undetermined span of time. Our proposal is based on the analysis of the wrinkle patterns, presenting a comparative study of diverse features and classification methods, and providing a set of appro- priate descriptors for their characterization. We provide a detailed analysis of the performance achieved by our system both in a qualitative and a quantitative way.
	Address	CVC (UAB)
	Corporate Author				Thesis	Ph.D. thesis
	Publisher		Place of Publication		Editor	Petia Radeva
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue	84-933652-7-0	Edition
	ISSN		ISBN		Medium
	Area	800	Expedition		Conference
	Notes	MV;SIAI			Approved	no
	Call Number	Admin @ si @ Vil2006; IAM @ iam @ Vil2006			Serial	738
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	Author	Fernando Vilariño; Gerard Lacey
	Title	QUALITY ASSESSMENT IN COLONOSCOPY New challenges through computer vision-based systems			Type	Conference Article
	Year	2009	Publication	in Proc. 3rd International Conference on Biomedical Electronics and Devices	Abbreviated Journal
	Volume		Issue		Pages
	Keywords
	Abstract
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area	800	Expedition		Conference
	Notes	MV;SIAI			Approved	no
	Call Number	fernando @ fernando @			Serial	2430
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	Author	Fernando Vilariño; Gerard Lacey; Jiang Zhou; Hugh Mulcahy; Stephen Patchett
	Title	Automatic Labeling of Colonoscopy Video for Cancer Detection			Type	Conference Article
	Year	2007	Publication	In Proc. berian Conference, IbPRIA	Abbreviated Journal
	Volume		Issue		Pages	290-297
	Keywords
	Abstract
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area	800	Expedition		Conference
	Notes	MV;SIAI			Approved	no
	Call Number	fernando @ fernando @			Serial	2431
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	Author	Fernando Vilariño; Ludmila I. Kuncheva; Petia Radeva
	Title	ROC curves and video analysis optimization in intestinal capsule endoscopy			Type	Journal Article
	Year	2006	Publication	Pattern Recognition Letters	Abbreviated Journal	PRL
	Volume	27	Issue	8	Pages	875–881
	Keywords	ROC curves; Classification; Classifiers ensemble; Detection of intestinal contractions; Imbalanced classes; Wireless capsule endoscopy
	Abstract	Wireless capsule endoscopy involves inspection of hours of video material by a highly qualified professional. Time episodes corresponding to intestinal contractions, which are of interest to the physician constitute about 1% of the video. The problem is to label automatically time episodes containing contractions so that only a fraction of the video needs inspection. As the classes of contraction and non-contraction images in the video are largely imbalanced, ROC curves are used to optimize the trade-off between false positive and false negative rates. Classifier ensemble methods and simple classifiers were examined. Our results reinforce the claims from recent literature that classifier ensemble methods specifically designed for imbalanced problems have substantial advantages over simple classifiers and standard classifier ensembles. By using ROC curves with the bagging ensemble method the inspection time can be drastically reduced at the expense of a small fraction of missed contractions.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area	800	Expedition		Conference
	Notes	MILAB;MV;SIAI			Approved	no
	Call Number	BCNPCL @ bcnpcl @ VKR2006; IAM @ iam @ VKR2006			Serial	647
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	Author	Fernando Vilariño; Panagiota Spyridonos; Fosca De Iorio; Jordi Vitria; Fernando Azpiroz; Petia Radeva
	Title	Intestinal Motility Assessment With Video Capsule Endoscopy: Automatic Annotation of Phasic Intestinal Contractions			Type	Journal Article
	Year	2010	Publication	IEEE Transactions on Medical Imaging	Abbreviated Journal	TMI
	Volume	29	Issue	2	Pages	246-259
	Keywords
	Abstract	Intestinal motility assessment with video capsule endoscopy arises as a novel and challenging clinical fieldwork. This technique is based on the analysis of the patterns of intestinal contractions shown in a video provided by an ingestible capsule with a wireless micro-camera. The manual labeling of all the motility events requires large amount of time for offline screening in search of findings with low prevalence, which turns this procedure currently unpractical. In this paper, we propose a machine learning system to automatically detect the phasic intestinal contractions in video capsule endoscopy, driving a useful but not feasible clinical routine into a feasible clinical procedure. Our proposal is based on a sequential design which involves the analysis of textural, color, and blob features together with SVM classifiers. Our approach tackles the reduction of the imbalance rate of data and allows the inclusion of domain knowledge as new stages in the cascade. We present a detailed analysis, both in a quantitative and a qualitative way, by providing several measures of performance and the assessment study of interobserver variability. Our system performs at 70% of sensitivity for individual detection, whilst obtaining equivalent patterns to those of the experts for density of contractions.
	Address
	Corporate Author	IEEE			Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN	0278-0062	ISBN		Medium
	Area	800	Expedition		Conference
	Notes	MILAB;MV;OR;SIAI			Approved	no
	Call Number	BCNPCL @ bcnpcl @ VSD2010; IAM @ iam @ VSI2010			Serial	1281
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	Author	Fernando Vilariño; Panagiota Spyridonos; Jordi Vitria; C. Malagelada; Petia Radeva
	Title	Linear Radial Patterns Characterization for Automatic Detection of Tonic Intestinal Contractions			Type	Book Chapter
	Year	2006	Publication	11th Iberoamerican Congress on Pattern Recognition	Abbreviated Journal
	Volume	4225	Issue		Pages	178–187
	Keywords
	Abstract	This work tackles the categorization of general linear radial patterns by means of the valleys and ridges detection and the use of descriptors of directional information, which are provided by steerable filters in different regions of the image. We successfully apply our proposal in the specific case of automatic detection of tonic contractions in video capsule endoscopy, which represent a paradigmatic example of linear radial patterns.
	Address	Cancun (Mexico)
	Corporate Author				Thesis
	Publisher	Springer Verlag	Place of Publication	Berlin Heidelberg	Editor	.F. Mart ́ınez-Trinidad et al
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title	LNCS
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area	800	Expedition		Conference
	Notes	MV;OR;MILAB;SIAI			Approved	no
	Call Number	BCNPCL @ bcnpcl @ VSV2006c; IAM @ iam @ VSB2006f			Serial	728
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	Author	Fernando Vilariño; Panagiota Spyridonos; Jordi Vitria; C. Malagelada; Petia Radeva
	Title	A Machine Learning framework using SOMs: Applications in the Intestinal Motility Assessment			Type	Book Chapter
	Year	2006	Publication	11th Iberoamerican Congress on Pattern Recognition	Abbreviated Journal
	Volume	4225	Issue		Pages	188–197
	Keywords
	Abstract	Small Bowel Motility Assessment by means of Wireless Capsule Video Endoscopy constitutes a novel clinical methodology in which a capsule with a micro-camera attached to it is swallowed by the patient, emitting a RF signal which is recorded as a video of its trip throughout the gut. In order to overcome the main drawbacks associated with this technique -mainly related to the large amount of visualization time required-, our efforts have been focused on the development of a machine learning system, built up in sequential stages, which provides the specialists with the useful part of the video, rejecting those parts not valid for analysis. We successfully used Self Organized Maps in a general semi-supervised framework with the aim of tackling the different learning stages of our system. The analysis of the diverse types of images and the automatic detection of intestinal contractions is performed under the perspective of intestinal motility assessment in a clinical environment.
	Address	Cancun (Mexico)
	Corporate Author				Thesis
	Publisher	Springer Verlag	Place of Publication	Berlin-Heidelberg	Editor	J.P. Martinez–Trinidad et al
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title	LNCS
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area	800	Expedition		Conference	CIARP06
	Notes	MV;OR;MILAB;SIAI			Approved	no
	Call Number	BCNPCL @ bcnpcl @ VSV2006d; IAM @ iam @ VSV2006e			Serial	729
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	Author	Fernando Vilariño; Panagiota Spyridonos; Jordi Vitria; Fernando Azpiroz; Petia Radeva
	Title	Automatic Detection of Intestinal Juices in Wireless Capsule Video Endoscopy			Type	Conference Article
	Year	2006	Publication	18th International Conference on Pattern Recognition	Abbreviated Journal
	Volume	4	Issue		Pages	719-722
	Keywords	Clinical diagnosis , Endoscopes , Fluids and secretions , Gabor filters , Hospitals , Image sequence analysis , Intestines , Lighting , Shape , Visualization
	Abstract	Wireless capsule video endoscopy is a novel and challenging clinical technique, whose major reported drawback relates to the high amount of time needed for video visualization. In this paper, we propose a method for the rejection of the parts of the video resulting not valid for analysis by means of automatic detection of intestinal juices. We applied Gabor filters for the characterization of the bubble-like shape of intestinal juices in fasting patients. Our method achieves a significant reduction in visualization time, with no relevant loss of valid frames. The proposed approach is easily extensible to other image analysis scenarios where the described pattern of bubbles can be found.
	Address	Hong Kong
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN	1051-4651	ISBN	0-7695-2521-0	Medium
	Area	800	Expedition		Conference	ICPR
	Notes	MV;OR;MILAB;SIAI			Approved	no
	Call Number	BCNPCL @ bcnpcl @ VSV2006b; IAM @ iam @ VSV2006g			Serial	727
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	Author	Fernando Vilariño; Panagiota Spyridonos; Jordi Vitria; Fernando Azpiroz; Petia Radeva
	Title	Cascade analysis for intestinal contraction detection			Type	Conference Article
	Year	2006	Publication	20th International Congress and exhibition Computer Assisted Radiology and Surgery	Abbreviated Journal
	Volume		Issue		Pages	9-10
	Keywords	intestine video analysis, anisotropic features, support vector machine, cascade of classifiers
	Abstract	In this work, we address the study of intestinal contractions in a novel approach based on a machine learning framework to process data from Wireless Capsule Video Endoscopy. Wireless endoscopy represents a unique way to visualize the intestine motility by creating long videos to visualize intestine dynamics. In this paper we argue that to analyze huge amount of wireless endoscopy data and define robust methods for contraction detection we should base our approach on sophisticated machine learning techniques. In particular, we propose a cascade of classifiers in order to remove different physiological phenomenon and obtain the motility pattern of small intestines. Our results show obtaining high specificity and sensitivity rates that highlight the high efficiency of the selected approach and support the feasibility of the proposed methodology in the automatic detection and analysis of intestine contractions.
	Address	Osaka (Japan)
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area	800	Expedition		Conference	CARS
	Notes	MV;OR;MILAB;SIAI			Approved	no
	Call Number	BCNPCL @ bcnpcl @ VSV2006a; IAM @ iam @ VSV2006h			Serial	726
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	Author	Fernando Vilariño; Panagiota Spyridonos; Petia Radeva; Jordi Vitria; Fernando Azpiroz; Juan Malagelada
	Title	Method for automatic classification of in vivo images			Type	Patent
	Year	2010	Publication	US 2010/0046816	Abbreviated Journal
	Volume		Issue		Pages
	Keywords
	Abstract	A method for automatically detecting a post-duodenal boundary in an image stream of the gastrointestinal (GI) tract. The image stream is sampled to obtain a reduced set of images for processing. The reduced set of images is filtered to remove non-valid frames or non-valid portions of frames, thereby generating a filtered set of valid images. A polar representation of the valid images is generated. Textural features of the polar representation are processed to detect the post-duodenal boundary of the GI tract.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area	800	Expedition		Conference
	Notes	MV;OR;MILAB;SIAI			Approved	no
	Call Number	IAM @ iam @ VSR2010			Serial	1702
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	Author	Fernando Vilariño; Panagiota Spyridonos; Petia Radeva; Jordi Vitria; Fernando Azpiroz; Juan Malagelada
	Title	Device, system and method for measurement and analysis of contractile activity			Type	Patent
	Year	2009	Publication	US 2009/0202117 A1	Abbreviated Journal
	Volume		Issue		Pages
	Keywords
	Abstract	A method and system for determining intestinal dysfunction condition are provided by classifying and analyzing image frames captured in-vivo. The method and system also relate to the detection of contractile activity in intestinal tracts, to automatic detection of video image frames taken in the gastrointestinal tract including contractile activity, and more particularly to measurement and analysis of contractile activity of the GI tract based on image intensity of in vivo image data.
	Address	Pearl Cohen Zedek Latzer
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area	800	Expedition		Conference
	Notes	MV;OR;MILAB;SIAI			Approved	no
	Call Number	IAM @ iam @ VSR2009			Serial	1704
Permanent link to this record