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	Author	Patricia Marquez; Debora Gil ; Aura Hernandez-Sabate
	Title	Error Analysis for Lucas-Kanade Based Schemes			Type	Conference Article
	Year	2012	Publication	9th International Conference on Image Analysis and Recognition	Abbreviated Journal
	Volume	7324	Issue	I	Pages	184-191
	Keywords	Optical flow, Confidence measure, Lucas-Kanade, Cardiac Magnetic Resonance
	Abstract	Optical flow is a valuable tool for motion analysis in medical imaging sequences. A reliable application requires determining the accuracy of the computed optical flow. This is a main challenge given the absence of ground truth in medical sequences. This paper presents an error analysis of Lucas-Kanade schemes in terms of intrinsic design errors and numerical stability of the algorithm. Our analysis provides a confidence measure that is naturally correlated to the accuracy of the flow field. Our experiments show the higher predictive value of our confidence measure compared to existing measures.
	Address	Aveiro, Portugal
	Corporate Author				Thesis
	Publisher	Springer-Verlag Berlin Heidelberg	Place of Publication		Editor
	Language	english	Summary Language		Original Title
	Series Editor	Campilho, Aurélio and Kamel, Mohamed	Series Title	Lecture Notes in Computer Science	Abbreviated Series Title	LNCS
	Series Volume		Series Issue		Edition
	ISSN	0302-9743	ISBN	978-3-642-31294-6	Medium
	Area		Expedition		Conference	ICIAR
	Notes	IAM			Approved	no
	Call Number	IAM @ iam @ MGH2012a			Serial	1899
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	Author	Ricard Borras; Agata Lapedriza; Laura Igual
	Title	Depth Information in Human Gait Analysis: An Experimental Study on Gender Recognition			Type	Conference Article
	Year	2012	Publication	9th International Conference on Image Analysis and Recognition	Abbreviated Journal
	Volume	7325	Issue	II	Pages	98-105
	Keywords
	Abstract	This work presents DGait, a new gait database acquired with a depth camera. This database contains videos from 53 subjects walking in different directions. The intent of this database is to provide a public set to explore whether the depth can be used as an additional information source for gait classification purposes. Each video is labelled according to subject, gender and age. Furthermore, for each subject and view point, we provide initial and final frames of an entire walk cycle. On the other hand, we perform gait-based gender classification experiments with DGait database, in order to illustrate the usefulness of depth information for this purpose. In our experiments, we extract 2D and 3D gait features based on shape descriptors, and compare the performance of these features for gender identification, using a Kernel SVM. The obtained results show that depth can be an information source of great relevance for gait classification problems.
	Address	Aveiro, Portugal
	Corporate Author				Thesis
	Publisher	Springer Berlin Heidelberg	Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN	0302-9743	ISBN	978-3-642-31297-7	Medium
	Area		Expedition		Conference	ICIAR
	Notes	OR; MILAB;MV			Approved	no
	Call Number	Admin @ si @ BLI2012			Serial	2009
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	Author	Laura Igual; Joan Carles Soliva; Roger Gimeno; Sergio Escalera; Oscar Vilarroya; Petia Radeva
	Title	Automatic Internal Segmentation of Caudate Nucleus for Diagnosis of Attention Deficit Hyperactivity Disorder			Type	Conference Article
	Year	2012	Publication	9th International Conference on Image Analysis and Recognition	Abbreviated Journal
	Volume	7325	Issue	II	Pages	222-229
	Keywords
	Abstract	Poster Studies on volumetric brain Magnetic Resonance Imaging (MRI) showed neuroanatomical abnormalities in pediatric Attention-Deficit/Hyperactivity Disorder (ADHD). In particular, the diminished right caudate volume is one of the most replicated findings among ADHD samples in morphometric MRI studies. In this paper, we propose a fully-automatic method for internal caudate nucleus segmentation based on machine learning. Moreover, the ratio between right caudate body volume and the bilateral caudate body volume is applied in a ADHD diagnostic test. We separately validate the automatic internal segmentation of caudate in head and body structures and the diagnostic test using real data from ADHD and control subjects. As a result, we show accurate internal caudate segmentation and similar performance among the proposed automatic diagnostic test and the manual annotation.
	Address	Aveiro, Portugal
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title	LNCS
	Series Volume		Series Issue		Edition
	ISSN	0302-9743	ISBN	978-3-642-31297-7	Medium
	Area		Expedition		Conference	ICIAR
	Notes	OR; HuPBA; MILAB			Approved	no
	Call Number	Admin @ si @ ISG2012			Serial	2059
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	Author	Albert Gordo; Florent Perronnin; Ernest Valveny
	Title	Document classification using multiple views			Type	Conference Article
	Year	2012	Publication	10th IAPR International Workshop on Document Analysis Systems	Abbreviated Journal
	Volume		Issue		Pages	33-37
	Keywords
	Abstract	The combination of multiple features or views when representing documents or other kinds of objects usually leads to improved results in classification (and retrieval) tasks. Most systems assume that those views will be available both at training and test time. However, some views may be too `expensive' to be available at test time. In this paper, we consider the use of Canonical Correlation Analysis to leverage `expensive' views that are available only at training time. Experimental results show that this information may significantly improve the results in a classification task.
	Address	Australia
	Corporate Author				Thesis
	Publisher	IEEE Computer Society Washington	Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN	978-0-7695-4661-2	Medium
	Area		Expedition		Conference	DAS
	Notes	DAG			Approved	no
	Call Number	Admin @ si @ GPV2012			Serial	2049
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	Author	Mireia Sole; Joan Blanco; Debora Gil; Oliver Valero; B. Cardenas; G. Fonseka; E. Anton; Alvaro Pascual; Richard Frodsham; Zaida Sarrate
	Title	Time to match; when do homologous chromosomes become closer?			Type	Journal Article
	Year	2022	Publication	Chromosoma	Abbreviated Journal	CHRO
	Volume		Issue		Pages
	Keywords
	Abstract	In most eukaryotes, pairing of homologous chromosomes is an essential feature of meiosis that ensures homologous recombination and segregation. However, when the pairing process begins, it is still under investigation. Contrasting data exists in Mus musculus, since both leptotene DSB-dependent and preleptotene DSB-independent mechanisms have been described. To unravel this contention, we examined homologous pairing in pre-meiotic and meiotic Mus musculus cells using a threedimensional fuorescence in situ hybridization-based protocol, which enables the analysis of the entire karyotype using DNA painting probes. Our data establishes in an unambiguously manner that 73.83% of homologous chromosomes are already paired at premeiotic stages (spermatogonia-early preleptotene spermatocytes). The percentage of paired homologous chromosomes increases to 84.60% at mid-preleptotene-zygotene stage, reaching 100% at pachytene stage. Importantly, our results demonstrate a high percentage of homologous pairing observed before the onset of meiosis; this pairing does not occur randomly, as the percentage was higher than that observed in somatic cells (19.47%) and between nonhomologous chromosomes (41.1%). Finally, we have also observed that premeiotic homologous pairing is asynchronous and independent of the chromosome size, GC content, or presence of NOR regions.
	Address	August, 2022
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	IAM; 601.139; 600.145; 600.096			Approved	no
	Call Number	Admin @ si @ SBG2022			Serial	3719
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	Author	Oriol Ramos Terrades; Albert Berenguel; Debora Gil
	Title	A Flexible Outlier Detector Based on a Topology Given by Graph Communities			Type	Journal Article
	Year	2022	Publication	Big Data Research	Abbreviated Journal	BDR
	Volume	29	Issue		Pages	100332
	Keywords	Classification algorithms; Detection algorithms; Description of feature space local structure; Graph communities; Machine learning algorithms; Outlier detectors
	Abstract	Outlier detection is essential for optimal performance of machine learning methods and statistical predictive models. Their detection is especially determinant in small sample size unbalanced problems, since in such settings outliers become highly influential and significantly bias models. This particular experimental settings are usual in medical applications, like diagnosis of rare pathologies, outcome of experimental personalized treatments or pandemic emergencies. In contrast to population-based methods, neighborhood based local approaches compute an outlier score from the neighbors of each sample, are simple flexible methods that have the potential to perform well in small sample size unbalanced problems. A main concern of local approaches is the impact that the computation of each sample neighborhood has on the method performance. Most approaches use a distance in the feature space to define a single neighborhood that requires careful selection of several parameters, like the number of neighbors. This work presents a local approach based on a local measure of the heterogeneity of sample labels in the feature space considered as a topological manifold. Topology is computed using the communities of a weighted graph codifying mutual nearest neighbors in the feature space. This way, we provide with a set of multiple neighborhoods able to describe the structure of complex spaces without parameter fine tuning. The extensive experiments on real-world and synthetic data sets show that our approach outperforms, both, local and global strategies in multi and single view settings.
	Address	August 28, 2022
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	DAG; IAM; 600.140; 600.121; 600.139; 600.145; 600.159			Approved	no
	Call Number	Admin @ si @ RBG2022a			Serial	3718
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	Author	Mohamed Ali Souibgui; Sanket Biswas; Sana Khamekhem Jemni; Yousri Kessentini; Alicia Fornes; Josep Llados; Umapada Pal
	Title	DocEnTr: An End-to-End Document Image Enhancement Transformer			Type	Conference Article
	Year	2022	Publication	26th International Conference on Pattern Recognition	Abbreviated Journal
	Volume		Issue		Pages	1699-1705
	Keywords	Degradation; Head; Optical character recognition; Self-supervised learning; Benchmark testing; Transformers; Magnetic heads
	Abstract	Document images can be affected by many degradation scenarios, which cause recognition and processing difficulties. In this age of digitization, it is important to denoise them for proper usage. To address this challenge, we present a new encoder-decoder architecture based on vision transformers to enhance both machine-printed and handwritten document images, in an end-to-end fashion. The encoder operates directly on the pixel patches with their positional information without the use of any convolutional layers, while the decoder reconstructs a clean image from the encoded patches. Conducted experiments show a superiority of the proposed model compared to the state-of the-art methods on several DIBCO benchmarks. Code and models will be publicly available at: https://github.com/dali92002/DocEnTR
	Address	August 21-25, 2022 , Montréal Québec
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference	ICPR
	Notes	DAG; 600.121; 600.162; 602.230; 600.140			Approved	no
	Call Number	Admin @ si @ SBJ2022			Serial	3730
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	Author	David Aldavert; Ricardo Toledo
	Title	Stereo Vision Local Map Alignment for Robot Environment Mapping			Type	Book Chapter
	Year	2008	Publication	Robot Vision Second International Workshop, RobVis	Abbreviated Journal
	Volume	4931	Issue		Pages	111–124
	Keywords
	Abstract
	Address	Auckland (New Zealand)
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title	LNCS
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	ADAS			Approved	no
	Call Number	Admin @ si @ AlT2008			Serial	1100
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	Author	Antoni Gurgui; Debora Gil; Enric Marti; Vicente Grau
	Title	Left-Ventricle Basal Region Constrained Parametric Mapping to Unitary Domain			Type	Conference Article
	Year	2016	Publication	7th International Workshop on Statistical Atlases & Computational Modelling of the Heart	Abbreviated Journal
	Volume	10124	Issue		Pages	163-171
	Keywords	Laplacian; Constrained maps; Parameterization; Basal ring
	Abstract	Due to its complex geometry, the basal ring is often omitted when putting different heart geometries into correspondence. In this paper, we present the first results on a new mapping of the left ventricle basal rings onto a normalized coordinate system using a fold-over free approach to the solution to the Laplacian. To guarantee correspondences between different basal rings, we imposed some internal constrained positions at anatomical landmarks in the normalized coordinate system. To prevent internal fold-overs, constraints are handled by cutting the volume into regions defined by anatomical features and mapping each piece of the volume separately. Initial results presented in this paper indicate that our method is able to handle internal constrains without introducing fold-overs and thus guarantees one-to-one mappings between different basal ring geometries.
	Address	Athens; October 2016
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title	LNCS
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference	STACOM
	Notes	IAM;			Approved	no
	Call Number	Admin @ si @ GGM2016			Serial	2884
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	Author	Marco Buzzelli; Joost Van de Weijer; Raimondo Schettini
	Title	Learning Illuminant Estimation from Object Recognition			Type	Conference Article
	Year	2018	Publication	25th International Conference on Image Processing	Abbreviated Journal
	Volume		Issue		Pages	3234 - 3238
	Keywords	Illuminant estimation; computational color constancy; semi-supervised learning; deep learning; convolutional neural networks
	Abstract	In this paper we present a deep learning method to estimate the illuminant of an image. Our model is not trained with illuminant annotations, but with the objective of improving performance on an auxiliary task such as object recognition. To the best of our knowledge, this is the first example of a deep learning architecture for illuminant estimation that is trained without ground truth illuminants. We evaluate our solution on standard datasets for color constancy, and compare it with state of the art methods. Our proposal is shown to outperform most deep learning methods in a cross-dataset evaluation setup, and to present competitive results in a comparison with parametric solutions.
	Address	Athens; Greece; October 2018
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference	ICIP
	Notes	LAMP; 600.109; 600.120			Approved	no
	Call Number	Admin @ si @ BWS2018			Serial	3157
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	Author	Patricia Suarez; Angel Sappa; Boris X. Vintimilla; Riad I. Hammoud
	Title	Near InfraRed Imagery Colorization			Type	Conference Article
	Year	2018	Publication	25th International Conference on Image Processing	Abbreviated Journal
	Volume		Issue		Pages	2237 - 2241
	Keywords	Convolutional Neural Networks (CNN), Generative Adversarial Network (GAN), Infrared Imagery colorization
	Abstract	This paper proposes a stacked conditional Generative Adversarial Network-based method for Near InfraRed (NIR) imagery colorization. We propose a variant architecture of Generative Adversarial Network (GAN) that uses multiple loss functions over a conditional probabilistic generative model. We show that this new architecture/loss-function yields better generalization and representation of the generated colored IR images. The proposed approach is evaluated on a large test dataset and compared to recent state of the art methods using standard metrics.
	Address	Athens; Greece; October 2018
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference	ICIP
	Notes	MSIAU; 600.086; 600.130; 600.122			Approved	no
	Call Number	Admin @ si @ SSV2018b			Serial	3195
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	Author	Jose Marone; Simone Balocco; Marc Bolaños; Jose Massa; Petia Radeva
	Title	Learning the Lumen Border using a Convolutional Neural Networks classiﬁer			Type	Conference Article
	Year	2016	Publication	19th International Conference on Medical Image Computing and Computer Assisted Intervention Workshop	Abbreviated Journal
	Volume		Issue		Pages
	Keywords
	Abstract	IntraVascular UltraSound (IVUS) is a technique allowing the diagnosis of coronary plaque. An accurate (semi-)automatic assessment of the luminal contours could speed up the diagnosis. In most of the approaches, the information on the vessel shape is obtained combining a supervised learning step with a local refinement algorithm. In this paper, we explore for the first time, the use of a Convolutional Neural Networks (CNN) architecture that on one hand is able to extract the optimal image features and at the same time can serve as a supervised classifier to detect the lumen border in IVUS images. The main limitation of CNN, relies on the fact that this technique requires a large amount of training data due to the huge amount of parameters that it has. To solve this issue, we introduce a patch classification approach to generate an extended training-set from a few annotated images. An accuracy of 93% and F-score of 71% was obtained with this technique, even when it was applied to challenging frames containig calcified plaques, stents and catheter shadows.
	Address	Athens; Greece; October 2016
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference	MICCAIW
	Notes	MILAB;			Approved	no
	Call Number	Admin @ si @ MBB2016			Serial	2822
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	Author	Antonio Esteban Lansaque; Carles Sanchez; Agnes Borras; Marta Diez-Ferrer; Antoni Rosell; Debora Gil
	Title	Stable Anatomical Structure Tracking for video-bronchoscopy Navigation			Type	Conference Article
	Year	2016	Publication	19th International Conference on Medical Image Computing and Computer Assisted Intervention Workshops	Abbreviated Journal
	Volume		Issue		Pages
	Keywords	Lung cancer diagnosis; video-bronchoscopy; airway lumen detection; region tracking
	Abstract	Bronchoscopy allows to examine the patient airways for detection of lesions and sampling of tissues without surgery. A main drawback in lung cancer diagnosis is the diculty to check whether the exploration is following the correct path to the nodule that has to be biopsied. The most extended guidance uses uoroscopy which implies repeated radiation of clinical sta and patients. Alternatives such as virtual bronchoscopy or electromagnetic navigation are very expensive and not completely robust to blood, mocus or deformations as to be extensively used. We propose a method that extracts and tracks stable lumen regions at dierent levels of the bronchial tree. The tracked regions are stored in a tree that encodes the anatomical structure of the scene which can be useful to retrieve the path to the lesion that the clinician should follow to do the biopsy. We present a multi-expert validation of our anatomical landmark extraction in 3 intra-operative ultrathin explorations.
	Address	Athens; Greece; October 2016
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference	MICCAIW
	Notes	IAM; 600.075			Approved	no
	Call Number	Admin @ si @ LSB2016b			Serial	2857
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	Author	Eugenio Alcala; Laura Sellart; Vicenc Puig; Joseba Quevedo; Jordi Saludes; David Vazquez; Antonio Lopez
	Title	Comparison of two non-linear model-based control strategies for autonomous vehicles			Type	Conference Article
	Year	2016	Publication	24th Mediterranean Conference on Control and Automation	Abbreviated Journal
	Volume		Issue		Pages	846-851
	Keywords	Autonomous Driving; Control
	Abstract	This paper presents the comparison of two nonlinear model-based control strategies for autonomous cars. A control oriented model of vehicle based on a bicycle model is used. The two control strategies use a model reference approach. Using this approach, the error dynamics model is developed. Both controllers receive as input the longitudinal, lateral and orientation errors generating as control outputs the steering angle and the velocity of the vehicle. The first control approach is based on a non-linear control law that is designed by means of the Lyapunov direct approach. The second approach is based on a sliding mode-control that defines a set of sliding surfaces over which the error trajectories will converge. The main advantage of the sliding-control technique is the robustness against non-linearities and parametric uncertainties in the model. However, the main drawback of first order sliding mode is the chattering, so it has been implemented a high order sliding mode control. To test and compare the proposed control strategies, different path following scenarios are used in simulation.
	Address	Athens; Greece; June 2016
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference	MED
	Notes	ADAS; 600.085; 600.082; 600.076			Approved	no
	Call Number	ADAS @ adas @ ASP2016			Serial	2750
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	Author	Pau Baiget; Joan Soto; Xavier Roca; Jordi Gonzalez
	Title	Automatic Generation of Computer-Animated Sequences based on Human Behaviour Modelling			Type	Conference Article
	Year	2007	Publication	10th International Conference on Computer Graphics and Artificial Intelligence	Abbreviated Journal
	Volume		Issue		Pages
	Keywords
	Abstract
	Address	Athens (Greece)
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference	3IA
	Notes	ISE			Approved	no
	Call Number	ISE @ ise @ BSR2007			Serial	808
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