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Gloria Fernandez Esparrach; Jorge Bernal; Maria Lopez Ceron; Henry Cordova; Cristina Sanchez Montes; Cristina Rodriguez de Miguel; F. Javier Sanchez |
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Exploring the clinical potential of an automatic colonic polyp detection method based on the creation of energy maps |
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Journal Article |
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2016 |
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Endoscopy |
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END |
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48 |
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9 |
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837-842 |
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Background and aims: Polyp miss-rate is a drawback of colonoscopy that increases significantly in small polyps. We explored the efficacy of an automatic computer vision method for polyp detection.
Methods: Our method relies on a model that defines polyp boundaries as valleys of image intensity. Valley information is integrated into energy maps which represent the likelihood of polyp presence.
Results: In 24 videos containing polyps from routine colonoscopies, all polyps were detected in at least one frame. Mean values of the maximum of energy map were higher in frames with polyps than without (p<0.001). Performance improved in high quality frames (AUC= 0.79, 95%CI: 0.70-0.87 vs 0.75, 95%CI: 0.66-0.83). Using 3.75 as maximum threshold value, sensitivity and specificity for detection of polyps were 70.4% (95%CI: 60.3-80.8) and 72.4% (95%CI: 61.6-84.6), respectively.
Conclusion: Energy maps showed a good performance for colonic polyp detection. This indicates a potential applicability in clinical practice. |
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MV; |
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Admin @ si @FBL2016 |
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2778 |
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Sumit K. Banchhor; Tadashi Araki; Narendra D. Londhe; Nobutaka Ikeda; Petia Radeva; Ayman El-Baz; Luca Saba; Andrew Nicolaides; Shoaib Shafique; John R. Laird; Jasjit S. Suri |
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Five multiresolution-based calcium volume measurement techniques from coronary IVUS videos: A comparative approach |
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Journal Article |
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2016 |
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Computer Methods and Programs in Biomedicine |
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CMPB |
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134 |
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237-258 |
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BACKGROUND AND OBJECTIVE:
Fast intravascular ultrasound (IVUS) video processing is required for calcium volume computation during the planning phase of percutaneous coronary interventional (PCI) procedures. Nonlinear multiresolution techniques are generally applied to improve the processing time by down-sampling the video frames.
METHODS:
This paper presents four different segmentation methods for calcium volume measurement, namely Threshold-based, Fuzzy c-Means (FCM), K-means, and Hidden Markov Random Field (HMRF) embedded with five different kinds of multiresolution techniques (bilinear, bicubic, wavelet, Lanczos, and Gaussian pyramid). This leads to 20 different kinds of combinations. IVUS image data sets consisting of 38,760 IVUS frames taken from 19 patients were collected using 40 MHz IVUS catheter (Atlantis® SR Pro, Boston Scientific®, pullback speed of 0.5 mm/sec.). The performance of these 20 systems is compared with and without multiresolution using the following metrics: (a) computational time; (b) calcium volume; (c) image quality degradation ratio; and (d) quality assessment ratio.
RESULTS:
Among the four segmentation methods embedded with five kinds of multiresolution techniques, FCM segmentation combined with wavelet-based multiresolution gave the best performance. FCM and wavelet experienced the highest percentage mean improvement in computational time of 77.15% and 74.07%, respectively. Wavelet interpolation experiences the highest mean precision-of-merit (PoM) of 94.06 ± 3.64% and 81.34 ± 16.29% as compared to other multiresolution techniques for volume level and frame level respectively. Wavelet multiresolution technique also experiences the highest Jaccard Index and Dice Similarity of 0.7 and 0.8, respectively. Multiresolution is a nonlinear operation which introduces bias and thus degrades the image. The proposed system also provides a bias correction approach to enrich the system, giving a better mean calcium volume similarity for all the multiresolution-based segmentation methods. After including the bias correction, bicubic interpolation gives the largest increase in mean calcium volume similarity of 4.13% compared to the rest of the multiresolution techniques. The system is automated and can be adapted in clinical settings.
CONCLUSIONS:
We demonstrated the time improvement in calcium volume computation without compromising the quality of IVUS image. Among the 20 different combinations of multiresolution with calcium volume segmentation methods, the FCM embedded with wavelet-based multiresolution gave the best performance. |
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MILAB; |
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Admin @ si @ BAL2016 |
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2830 |
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Mark Philip Philipsen; Anders Jorgensen; Thomas B. Moeslund; Sergio Escalera |
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Title |
RGB-D Segmentation of Poultry Entrails |
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Conference Article |
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2016 |
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9th Conference on Articulated Motion and Deformable Objects |
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Best commercial paper award. |
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AMDO |
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HuPBA;MILAB |
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Admin @ si @ PJM2016 |
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2848 |
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Author |
Dennis H. Lundtoft; Kamal Nasrollahi; Thomas B. Moeslund; Sergio Escalera |
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Title |
Spatiotemporal Facial Super-Pixels for Pain Detection |
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Conference Article |
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2016 |
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9th Conference on Articulated Motion and Deformable Objects |
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Facial images; Super-pixels; Spatiotemporal filters; Pain detection |
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Best student paper award.
Pain detection using facial images is of critical importance in many Health applications. Since pain is a spatiotemporal process, recent works on this topic employ facial spatiotemporal features to detect pain. These systems extract such features from the entire area of the face. In this paper, we show that by employing super-pixels we can divide the face into three regions, in a way that only one of these regions (about one third of the face) contributes to the pain estimation and the other two regions can be discarded. The experimental results on the UNBCMcMaster database show that the proposed system using this single region outperforms state-of-the-art systems in detecting no-pain scenarios, while it reaches comparable results in detecting weak and severe pain scenarios. |
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Palma de Mallorca; Spain; July 2016 |
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AMDO |
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HUPBA;MILAB |
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no |
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Admin @ si @ LNM2016 |
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2847 |
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Antonio Esteban Lansaque; Carles Sanchez; Agnes Borras; Marta Diez-Ferrer; Antoni Rosell; Debora Gil |
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Title |
Stable Airway Center Tracking for Bronchoscopic Navigation |
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Conference Article |
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2016 |
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28th Conference of the international Society for Medical Innovation and Technology |
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Bronchoscopists use X‐ray fluoroscopy to guide bronchoscopes to the lesion to be biopsied without any kind of incisions. Reducing exposure to X‐ray is important for both patients and doctors but alternatives like electromagnetic navigation require specific equipment and increase the cost of the clinical procedure. We propose a guiding system based on the extraction of airway centers from intra‐operative videos. Such anatomical landmarks could be
matched to the airway centerline extracted from a pre‐planned CT to indicate the best path to the lesion. We present an extraction of lumen centers
from intra‐operative videos based on tracking of maximal stable regions of energy maps. |
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Delft; Rotterdam; Leiden; The Netherlands; October 2016 |
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SMIT |
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IAM; |
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Admin @ si @ LSB2016a |
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2856 |
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Antonio Esteban Lansaque; Carles Sanchez; Agnes Borras; Marta Diez-Ferrer; Antoni Rosell; Debora Gil |
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Title |
Stable Anatomical Structure Tracking for video-bronchoscopy Navigation |
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Conference Article |
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2016 |
Publication |
19th International Conference on Medical Image Computing and Computer Assisted Intervention Workshops |
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Lung cancer diagnosis; video-bronchoscopy; airway lumen detection; region tracking |
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Bronchoscopy allows to examine the patient airways for detection of lesions and sampling of tissues without surgery. A main drawback in lung cancer diagnosis is the diculty to check whether the exploration is following the correct path to the nodule that has to be biopsied. The most extended guidance uses uoroscopy which implies repeated radiation of clinical sta and patients. Alternatives such as virtual bronchoscopy or electromagnetic navigation are very expensive and not completely robust to blood, mocus or deformations as to be extensively used. We propose a method that extracts and tracks stable lumen regions at di erent levels of the bronchial tree. The tracked regions are stored in a tree that encodes the anatomical structure of the scene which can be useful to retrieve the path to the lesion that the clinician should follow to do the biopsy. We present a multi-expert validation of our anatomical landmark extraction in 3 intra-operative ultrathin explorations. |
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Athens; Greece; October 2016 |
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IAM; 600.075 |
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Admin @ si @ LSB2016b |
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2857 |
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Author |
Carles Sanchez; Debora Gil; Jorge Bernal; F. Javier Sanchez; Marta Diez-Ferrer; Antoni Rosell |
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Title |
Navigation Path Retrieval from Videobronchoscopy using Bronchial Branches |
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Conference Article |
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2016 |
Publication |
19th International Conference on Medical Image Computing and Computer Assisted Intervention Workshops |
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9401 |
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62-70 |
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Bronchoscopy navigation; Lumen center; Brochial branches; Navigation path; Videobronchoscopy |
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Abstract |
Bronchoscopy biopsy can be used to diagnose lung cancer without risking complications of other interventions like transthoracic needle aspiration. During bronchoscopy, the clinician has to navigate through the bronchial tree to the target lesion. A main drawback is the difficulty to check whether the exploration is following the correct path. The usual guidance using fluoroscopy implies repeated radiation of the clinician, while alternative systems (like electromagnetic navigation) require specific equipment that increases intervention costs. We propose to compute the navigated path using anatomical landmarks extracted from the sole analysis of videobronchoscopy images. Such landmarks allow matching the current exploration to the path previously planned on a CT to indicate clinician whether the planning is being correctly followed or not. We present a feasibility study of our landmark based CT-video matching using bronchoscopic videos simulated on a virtual bronchoscopy interactive interface. |
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Quebec; Canada; September 2016 |
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LNCS |
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IAM; MV; 600.060; 600.075 |
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Admin @ si @ SGB2016 |
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2885 |
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Pedro Martins; Paulo Carvalho; Carlo Gatta |
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On the completeness of feature-driven maximally stable extremal regions |
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2016 |
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Pattern Recognition Letters |
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PRL |
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74 |
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9-16 |
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Local features; Completeness; Maximally Stable Extremal Regions |
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By definition, local image features provide a compact representation of the image in which most of the image information is preserved. This capability offered by local features has been overlooked, despite being relevant in many application scenarios. In this paper, we analyze and discuss the performance of feature-driven Maximally Stable Extremal Regions (MSER) in terms of the coverage of informative image parts (completeness). This type of features results from an MSER extraction on saliency maps in which features related to objects boundaries or even symmetry axes are highlighted. These maps are intended to be suitable domains for MSER detection, allowing this detector to provide a better coverage of informative image parts. Our experimental results, which were based on a large-scale evaluation, show that feature-driven MSER have relatively high completeness values and provide more complete sets than a traditional MSER detection even when sets of similar cardinality are considered. |
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Elsevier B.V. |
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0167-8655 |
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LAMP;MILAB; |
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Admin @ si @ MCG2016 |
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2748 |
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C. Alejandro Parraga; Arash Akbarinia |
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Title |
Colour Constancy as a Product of Dynamic Centre-Surround Adaptation |
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2016 |
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16th Annual meeting in Vision Sciences Society |
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16 |
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12 |
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Colour constancy refers to the human visual system's ability to preserve the perceived colour of objects despite changes in the illumination. Its exact mechanisms are unknown, although a number of systems ranging from retinal to cortical and memory are thought to play important roles. The strength of the perceptual shift necessary to preserve these colours is usually estimated by the vectorial distances from an ideal match (or canonical illuminant). In this work we explore how much of the colour constancy phenomenon could be explained by well-known physiological properties of V1 and V2 neurons whose receptive fields (RF) vary according to the contrast and orientation of surround stimuli. Indeed, it has been shown that both RF size and the normalization occurring between centre and surround in cortical neurons depend on the local properties of surrounding stimuli. Our stating point is the construction of a computational model which includes this dynamical centre-surround adaptation by means of two overlapping asymmetric Gaussian kernels whose variances are adjusted to the contrast of surrounding pixels to represent the changes in RF size of cortical neurons and the weights of their respective contributions are altered according to differences in centre-surround contrast and orientation. The final output of the model is obtained after convolving an image with this dynamical operator and an estimation of the illuminant is obtained by considering the contrast of the far surround. We tested our algorithm on naturalistic stimuli from several benchmark datasets. Our results show that although our model does not require any training, its performance against the state-of-the-art is highly competitive, even outperforming learning-based algorithms in some cases. Indeed, these results are very encouraging if we consider that they were obtained with the same parameters for all datasets (i.e. just like the human visual system operates). |
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Florida; USA; May 2016 |
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VSS |
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NEUROBIT |
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Admin @ si @ PaA2016b |
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2901 |
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Mariella Dimiccoli |
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Fundamentals of cone regression |
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2016 |
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Journal of Statistics Surveys |
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10 |
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53-99 |
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cone regression; linear complementarity problems; proximal operators. |
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Cone regression is a particular case of quadratic programming that minimizes a weighted sum of squared residuals under a set of linear inequality constraints. Several important statistical problems such as isotonic, concave regression or ANOVA under partial orderings, just to name a few, can be considered as particular instances of the cone regression problem. Given its relevance in Statistics, this paper aims to address the fundamentals of cone regression from a theoretical and practical point of view. Several formulations of the cone regression problem are considered and, focusing on the particular case of concave regression as an example, several algorithms are analyzed and compared both qualitatively and quantitatively through numerical simulations. Several improvements to enhance numerical stability and bound the computational cost are proposed. For each analyzed algorithm, the pseudo-code and its corresponding code in Matlab are provided. The results from this study demonstrate that the choice of the optimization approach strongly impacts the numerical performances. It is also shown that methods are not currently available to solve efficiently cone regression problems with large dimension (more than many thousands of points). We suggest further research to fill this gap by exploiting and adapting classical multi-scale strategy to compute an approximate solution. |
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1935-7516 |
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MILAB; |
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Admin @ si @Dim2016a |
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2783 |
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Marc Bolaños; Petia Radeva |
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Simultaneous Food Localization and Recognition |
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2016 |
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23rd International Conference on Pattern Recognition |
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CoRR abs/1604.07953
The development of automatic nutrition diaries, which would allow to keep track objectively of everything we eat, could enable a whole new world of possibilities for people concerned about their nutrition patterns. With this purpose, in this paper we propose the first method for simultaneous food localization and recognition. Our method is based on two main steps, which consist in, first, produce a food activation map on the input image (i.e. heat map of probabilities) for generating bounding boxes proposals and, second, recognize each of the food types or food-related objects present in each bounding box. We demonstrate that our proposal, compared to the most similar problem nowadays – object localization, is able to obtain high precision and reasonable recall levels with only a few bounding boxes. Furthermore, we show that it is applicable to both conventional and egocentric images. |
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Cancun; Mexico; December 2016 |
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ICPR |
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MILAB; no proj |
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Admin @ si @ BoR2016 |
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2834 |
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Pedro Herruzo; Marc Bolaños; Petia Radeva |
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Title |
Can a CNN Recognize Catalan Diet? |
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2016 |
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AIP Conference Proceedings |
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1773 |
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CoRR abs/1607.08811
Nowadays, we can find several diseases related to the unhealthy diet habits of the population, such as diabetes, obesity, anemia, bulimia and anorexia. In many cases, these diseases are related to the food consumption of people. Mediterranean diet is scientifically known as a healthy diet that helps to prevent many metabolic diseases. In particular, our work focuses on the recognition of Mediterranean food and dishes. The development of this methodology would allow to analise the daily habits of users with wearable cameras, within the topic of lifelogging. By using automatic mechanisms we could build an objective tool for the analysis of the patient’s behavior, allowing specialists to discover unhealthy food patterns and understand the user’s lifestyle.
With the aim to automatically recognize a complete diet, we introduce a challenging multi-labeled dataset related to Mediter-ranean diet called FoodCAT. The first type of label provided consists of 115 food classes with an average of 400 images per dish, and the second one consists of 12 food categories with an average of 3800 pictures per class. This dataset will serve as a basis for the development of automatic diet recognition. In this context, deep learning and more specifically, Convolutional Neural Networks (CNNs), currently are state-of-the-art methods for automatic food recognition. In our work, we compare several architectures for image classification, with the purpose of diet recognition. Applying the best model for recognising food categories, we achieve a top-1 accuracy of 72.29%, and top-5 of 97.07%. In a complete diet recognition of dishes from Mediterranean diet, enlarged with the Food-101 dataset for international dishes recognition, we achieve a top-1 accuracy of 68.07%, and top-5 of 89.53%, for a total of 115+101 food classes. |
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Admin @ si @ HBR2016 |
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2837 |
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Daniel Hernandez; Alejandro Chacon; Antonio Espinosa; David Vazquez; Juan Carlos Moure; Antonio Lopez |
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Embedded real-time stereo estimation via Semi-Global Matching on the GPU |
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2016 |
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16th International Conference on Computational Science |
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80 |
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143-153 |
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Autonomous Driving; Stereo; CUDA; 3d reconstruction |
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Dense, robust and real-time computation of depth information from stereo-camera systems is a computationally demanding requirement for robotics, advanced driver assistance systems (ADAS) and autonomous vehicles. Semi-Global Matching (SGM) is a widely used algorithm that propagates consistency constraints along several paths across the image. This work presents a real-time system producing reliable disparity estimation results on the new embedded energy-efficient GPU devices. Our design runs on a Tegra X1 at 41 frames per second for an image size of 640x480, 128 disparity levels, and using 4 path directions for the SGM method. |
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San Diego; CA; USA; June 2016 |
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ADAS; 600.085; 600.082; 600.076 |
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ADAS @ adas @ HCE2016a |
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2740 |
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Daniel Hernandez; Alejandro Chacon; Antonio Espinosa; David Vazquez; Juan Carlos Moure; Antonio Lopez |
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Stereo Matching using SGM on the GPU |
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Report |
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2016 |
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Programming and Tuning Massively Parallel Systems |
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PUMPS |
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CUDA; Stereo; Autonomous Vehicle |
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Dense, robust and real-time computation of depth information from stereo-camera systems is a computationally demanding requirement for robotics, advanced driver assistance systems (ADAS) and autonomous vehicles. Semi-Global Matching (SGM) is a widely used algorithm that propagates consistency constraints along several paths across the image. This work presents a real-time system producing reliable disparity estimation results on the new embedded energy efficient GPU devices. Our design runs on a Tegra X1 at 42 frames per second (fps) for an image size of 640x480, 128 disparity levels, and using 4 path directions for the SGM method. |
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ADAS; 600.085; 600.087; 600.076 |
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ADAS @ adas @ HCE2016b |
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2776 |
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Maria Salamo; Inmaculada Rodriguez; Maite Lopez; Anna Puig; Simone Balocco; Mariona Taule |
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Recurso docente para la atención de la diversidad en el aula mediante la predicción de notas |
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2016 |
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ReVision |
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9 |
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1 |
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Aprendizaje automatico; Sistema de prediccion de notas; Herramienta docente |
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Desde la implantación del Espacio Europeo de Educación Superior (EEES) en los diferentes grados, se ha puesto de manifiesto la necesidad de utilizar diversos mecanismos que permitan tratar la diversidad en el aula, evaluando automáticamente y proporcionando una retroalimentación rápida tanto al alumnado como al profesorado sobre la evolución de los alumnos en una asignatura. En este artículo se presenta la evaluación de la exactitud en las predicciones de GRADEFORESEER, un recurso docente para la predicción de notas basado en técnicas de aprendizaje automático que permite evaluar la evolución del alumnado y estimar su nota final al terminar el curso. Este recurso se ha complementado con una interfaz de usuario para el profesorado que puede ser usada en diferentes plataformas software (sistemas operativos) y en cualquier asignatura de un grado en la que se utilice evaluación continuada. Además de la descripción del recurso, este artículo presenta los resultados obtenidos al aplicar el sistema de predicción en cuatro asignaturas de disciplinas distintas: Programación I (PI), Diseño de Software (DSW) del grado de Ingeniería Informática, Tecnologías de la Información y la Comunicación (TIC) del grado de Lingüística y la asignatura Fundamentos de Tecnología (FDT) del grado de Información y Documentación, todas ellas impartidas en la Universidad de Barcelona.
La capacidad predictiva se ha evaluado de forma binaria (aprueba o no) y según un criterio de rango (suspenso, aprobado, notable o sobresaliente), obteniendo mejores predicciones en los resultados evaluados de forma binaria. |
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MILAB; |
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Admin @ si @ SRL2016 |
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2820 |
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