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	Author	C. Alejandro Parraga
	Title	Colours and Colour Vision: An Introductory Survey			Type	Journal Article
	Year	2017	Publication	Perception	Abbreviated Journal	PER
	Volume	46	Issue	5	Pages	640-641
	Keywords
	Abstract
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	NEUROBIT; no menciona			Approved	no
	Call Number	Par2017			Serial	3101
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	Author	David Berga; Xavier Otazu; Xose R. Fernandez-Vidal; Victor Leboran; Xose M. Pardo
	Title	Generating Synthetic Images for Visual Attention Modeling			Type	Journal Article
	Year	2019	Publication	Perception	Abbreviated Journal	PER
	Volume	48	Issue		Pages	99
	Keywords
	Abstract
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	NEUROBIT; no menciona			Approved	no
	Call Number	Admin @ si @ BOF2019			Serial	3309
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	Author	A.S. Coquel; Jean-Pascal Jacob; M. Primet; A. Demarez; Mariella Dimiccoli; T. Julou; L. Moisan; A. Lindner; H. Berry
	Title	Localization of protein aggregation in Escherichia coli is governed by diffusion and nucleoid macromolecular crowding effect			Type	Journal Article
	Year	2013	Publication	Plos Computational Biology	Abbreviated Journal	PCB
	Volume	9	Issue	4	Pages
	Keywords
	Abstract	Aggregates of misfolded proteins are a hallmark of many age-related diseases. Recently, they have been linked to aging of Escherichia coli (E. coli) where protein aggregates accumulate at the old pole region of the aging bacterium. Because of the potential of E. coli as a model organism, elucidating aging and protein aggregation in this bacterium may pave the way to significant advances in our global understanding of aging. A first obstacle along this path is to decipher the mechanisms by which protein aggregates are targeted to specific intercellular locations. Here, using an integrated approach based on individual-based modeling, time-lapse fluorescence microscopy and automated image analysis, we show that the movement of aging-related protein aggregates in E. coli is purely diffusive (Brownian). Using single-particle tracking of protein aggregates in live E. coli cells, we estimated the average size and diffusion constant of the aggregates. Our results provide evidence that the aggregates passively diffuse within the cell, with diffusion constants that depend on their size in agreement with the Stokes-Einstein law. However, the aggregate displacements along the cell long axis are confined to a region that roughly corresponds to the nucleoid-free space in the cell pole, thus confirming the importance of increased macromolecular crowding in the nucleoids. We thus used 3D individual-based modeling to show that these three ingredients (diffusion, aggregation and diffusion hindrance in the nucleoids) are sufficient and necessary to reproduce the available experimental data on aggregate localization in the cells. Taken together, our results strongly support the hypothesis that the localization of aging-related protein aggregates in the poles of E. coli results from the coupling of passive diffusion-aggregation with spatially non-homogeneous macromolecular crowding. They further support the importance of “soft” intracellular structuring (based on macromolecular crowding) in diffusion-based protein localization in E. coli.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor	: Stanislav Shvartsman, Princeton University, United States of America
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes				Approved	no
	Call Number	Admin @ si @CJP2013			Serial	2786
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	Author	Zhen Xu; Sergio Escalera; Adrien Pavao; Magali Richard; Wei-Wei Tu; Quanming Yao; Huan Zhao; Isabelle Guyon
	Title	Codabench: Flexible, easy-to-use, and reproducible meta-benchmark platform			Type	Journal Article
	Year	2022	Publication	Patterns	Abbreviated Journal	PATTERNS
	Volume	3	Issue	7	Pages	100543
	Keywords	Machine learning; data science; benchmark platform; reproducibility; competitions
	Abstract	Obtaining a standardized benchmark of computational methods is a major issue in data-science communities. Dedicated frameworks enabling fair benchmarking in a unified environment are yet to be developed. Here, we introduce Codabench, a meta-benchmark platform that is open sourced and community driven for benchmarking algorithms or software agents versus datasets or tasks. A public instance of Codabench is open to everyone free of charge and allows benchmark organizers to fairly compare submissions under the same setting (software, hardware, data, algorithms), with custom protocols and data formats. Codabench has unique features facilitating easy organization of flexible and reproducible benchmarks, such as the possibility of reusing templates of benchmarks and supplying compute resources on demand. Codabench has been used internally and externally on various applications, receiving more than 130 users and 2,500 submissions. As illustrative use cases, we introduce four diverse benchmarks covering graph machine learning, cancer heterogeneity, clinical diagnosis, and reinforcement learning.
	Address	June 24, 2022
	Corporate Author				Thesis
	Publisher	Science Direct	Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	HuPBA			Approved	no
	Call Number	Admin @ si @ XEP2022			Serial	3764
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	Author	Marçal Rusiñol; Josep Llados; Gemma Sanchez
	Title	Symbol Spotting in Vectorized Technical Drawings Through a Lookup Table of Region Strings			Type	Journal Article
	Year	2010	Publication	Pattern Analysis and Applications	Abbreviated Journal	PAA
	Volume	13	Issue	3	Pages	321-331
	Keywords
	Abstract	In this paper, we address the problem of symbol spotting in technical document images applied to scanned and vectorized line drawings. Like any information spotting architecture, our approach has two components. First, symbols are decomposed in primitives which are compactly represented and second a primitive indexing structure aims to efficiently retrieve similar primitives. Primitives are encoded in terms of attributed strings representing closed regions. Similar strings are clustered in a lookup table so that the set median strings act as indexing keys. A voting scheme formulates hypothesis in certain locations of the line drawing image where there is a high presence of regions similar to the queried ones, and therefore, a high probability to find the queried graphical symbol. The proposed approach is illustrated in a framework consisting in spotting furniture symbols in architectural drawings. It has been proved to work even in the presence of noise and distortion introduced by the scanning and raster-to-vector processes.
	Address
	Corporate Author				Thesis
	Publisher	Springer-Verlag	Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN	1433-7541	ISBN		Medium
	Area		Expedition		Conference
	Notes	DAG			Approved	no
	Call Number	DAG @ dag @ RLS2010			Serial	1165
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	Author	Eloi Puertas; Sergio Escalera; Oriol Pujol
	Title	Generalized Multi-scale Stacked Sequential Learning for Multi-class Classification			Type	Journal Article
	Year	2015	Publication	Pattern Analysis and Applications	Abbreviated Journal	PAA
	Volume	18	Issue	2	Pages	247-261
	Keywords	Stacked sequential learning; Multi-scale; Error-correct output codes (ECOC); Contextual classification
	Abstract	In many classification problems, neighbor data labels have inherent sequential relationships. Sequential learning algorithms take benefit of these relationships in order to improve generalization. In this paper, we revise the multi-scale sequential learning approach (MSSL) for applying it in the multi-class case (MMSSL). We introduce the error-correcting output codesframework in the MSSL classifiers and propose a formulation for calculating confidence maps from the margins of the base classifiers. In addition, we propose a MMSSL compression approach which reduces the number of features in the extended data set without a loss in performance. The proposed methods are tested on several databases, showing significant performance improvement compared to classical approaches.
	Address
	Corporate Author				Thesis
	Publisher	Springer-Verlag	Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN	1433-7541	ISBN		Medium
	Area		Expedition		Conference
	Notes	HuPBA;MILAB			Approved	no
	Call Number	Admin @ si @ PEP2013			Serial	2251
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	Author	Mohammad Ali Bagheri; Qigang Gao; Sergio Escalera
	Title	Combining Local and Global Learners in the Pairwise Multiclass Classification			Type	Journal Article
	Year	2015	Publication	Pattern Analysis and Applications	Abbreviated Journal	PAA
	Volume	18	Issue	4	Pages	845-860
	Keywords	Multiclass classification; Pairwise approach; One-versus-one
	Abstract	Pairwise classification is a well-known class binarization technique that converts a multiclass problem into a number of two-class problems, one problem for each pair of classes. However, in the pairwise technique, nuisance votes of many irrelevant classifiers may result in a wrong class prediction. To overcome this problem, a simple, but efficient method is proposed and evaluated in this paper. The proposed method is based on excluding some classes and focusing on the most probable classes in the neighborhood space, named Local Crossing Off (LCO). This procedure is performed by employing a modified version of standard K-nearest neighbor and large margin nearest neighbor algorithms. The LCO method takes advantage of nearest neighbor classification algorithm because of its local learning behavior as well as the global behavior of powerful binary classifiers to discriminate between two classes. Combining these two properties in the proposed LCO technique will avoid the weaknesses of each method and will increase the efficiency of the whole classification system. On several benchmark datasets of varying size and difficulty, we found that the LCO approach leads to significant improvements using different base learners. The experimental results show that the proposed technique not only achieves better classification accuracy in comparison to other standard approaches, but also is computationally more efficient for tackling classification problems which have a relatively large number of target classes.
	Address
	Corporate Author				Thesis
	Publisher	Springer London	Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN	1433-7541	ISBN		Medium
	Area		Expedition		Conference
	Notes	HuPBA;MILAB			Approved	no
	Call Number	Admin @ si @ BGE2014			Serial	2441
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	Author	Alejandro Cartas; Juan Marin; Petia Radeva; Mariella Dimiccoli
	Title	Batch-based activity recognition from egocentric photo-streams revisited			Type	Journal Article
	Year	2018	Publication	Pattern Analysis and Applications	Abbreviated Journal	PAA
	Volume	21	Issue	4	Pages	953–965
	Keywords	Egocentric vision; Lifelogging; Activity recognition; Deep learning; Recurrent neural networks
	Abstract	Wearable cameras can gather large amounts of image data that provide rich visual information about the daily activities of the wearer. Motivated by the large number of health applications that could be enabled by the automatic recognition of daily activities, such as lifestyle characterization for habit improvement, context-aware personal assistance and tele-rehabilitation services, we propose a system to classify 21 daily activities from photo-streams acquired by a wearable photo-camera. Our approach combines the advantages of a late fusion ensemble strategy relying on convolutional neural networks at image level with the ability of recurrent neural networks to account for the temporal evolution of high-level features in photo-streams without relying on event boundaries. The proposed batch-based approach achieved an overall accuracy of 89.85%, outperforming state-of-the-art end-to-end methodologies. These results were achieved on a dataset consists of 44,902 egocentric pictures from three persons captured during 26 days in average.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	MILAB; no proj			Approved	no
	Call Number	Admin @ si @ CMR2018			Serial	3186
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	Author	Thanh Ha Do; Oriol Ramos Terrades; Salvatore Tabbone
	Title	DSD: document sparse-based denoising algorithm			Type	Journal Article
	Year	2019	Publication	Pattern Analysis and Applications	Abbreviated Journal	PAA
	Volume	22	Issue	1	Pages	177–186
	Keywords	Document denoising; Sparse representations; Sparse dictionary learning; Document degradation models
	Abstract	In this paper, we present a sparse-based denoising algorithm for scanned documents. This method can be applied to any kind of scanned documents with satisfactory results. Unlike other approaches, the proposed approach encodes noise documents through sparse representation and visual dictionary learning techniques without any prior noise model. Moreover, we propose a precision parameter estimator. Experiments on several datasets demonstrate the robustness of the proposed approach compared to the state-of-the-art methods on document denoising.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	DAG; 600.097; 600.140; 600.121			Approved	no
	Call Number	Admin @ si @ DRT2019			Serial	3254
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	Author	Sophie Wuerger; Kaida Xiao; Chenyang Fu; Dimosthenis Karatzas
	Title	Colour-opponent mechanisms are not affected by age-related chromatic sensitivity changes			Type	Journal Article
	Year	2010	Publication	Ophthalmic and Physiological Optics	Abbreviated Journal	OPO
	Volume	30	Issue	5	Pages	635-659
	Keywords
	Abstract	The purpose of this study was to assess whether age-related chromatic sensitivity changes are associated with corresponding changes in hue perception in a large sample of colour-normal observers over a wide age range (n = 185; age range: 18-75 years). In these observers we determined both the sensitivity along the protan, deutan and tritan line; and settings for the four unique hues, from which the characteristics of the higher-order colour mechanisms can be derived. We found a significant decrease in chromatic sensitivity due to ageing, in particular along the tritan line. From the unique hue settings we derived the cone weightings associated with the colour mechanisms that are at equilibrium for the four unique hues. We found that the relative cone weightings (w(L) /w(M) and w(L) /w(S)) associated with the unique hues were independent of age. Our results are consistent with previous findings that the unique hues are rather constant with age while chromatic sensitivity declines. They also provide evidence in favour of the hypothesis that higher-order colour mechanisms are equipped with flexible cone weightings, as opposed to fixed weights. The mechanism underlying this compensation is still poorly understood.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	DAG; IF: 1.259			Approved	no
	Call Number	Admin @ si @ WXF2010			Serial	1826
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	Author	Frederic Sampedro; Anna Domenech; Sergio Escalera
	Title	Obtaining quantitative global tumoral state indicators based on whole-body PET/CT scans: A breast cancer case study			Type	Journal Article
	Year	2014	Publication	Nuclear Medicine Communications	Abbreviated Journal	NMC
	Volume	35	Issue	4	Pages	362-371
	Keywords
	Abstract	Objectives: In this work we address the need for the computation of quantitative global tumoral state indicators from oncological whole-body PET/computed tomography scans. The combination of such indicators with other oncological information such as tumor markers or biopsy results would prove useful in oncological decision-making scenarios. Materials and methods: From an ordering of 100 breast cancer patients on the basis of oncological state through visual analysis by a consensus of nuclear medicine specialists, a set of numerical indicators computed from image analysis of the PET/computed tomography scan is presented, which attempts to summarize a patient’s oncological state in a quantitative manner taking into consideration the total tumor volume, aggressiveness, and spread. Results: Results obtained by comparative analysis of the proposed indicators with respect to the experts’ evaluation show up to 87% Pearson’s correlation coefficient when providing expert-guided PET metabolic tumor volume segmentation and 64% correlation when using completely automatic image analysis techniques. Conclusion: Global quantitative tumor information obtained by whole-body PET/CT image analysis can prove useful in clinical nuclear medicine settings and oncological decision-making scenarios. The completely automatic computation of such indicators would improve its impact as time efficiency and specialist independence would be achieved.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	HuPBA;MILAB			Approved	no
	Call Number	SDE2014a			Serial	2444
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	Author	Frederic Sampedro; Anna Domenech; Sergio Escalera; Ignasi Carrio
	Title	Deriving global quantitative tumor response parameters from 18F-FDG PET-CT scans in patients with non-Hodgkins lymphoma			Type	Journal Article
	Year	2015	Publication	Nuclear Medicine Communications	Abbreviated Journal	NMC
	Volume	36	Issue	4	Pages	328-333
	Keywords
	Abstract	OBJECTIVES: The aim of the study was to address the need for quantifying the global cancer time evolution magnitude from a pair of time-consecutive positron emission tomography-computed tomography (PET-CT) scans. In particular, we focus on the computation of indicators using image-processing techniques that seek to model non-Hodgkin's lymphoma (NHL) progression or response severity. MATERIALS AND METHODS: A total of 89 pairs of time-consecutive PET-CT scans from NHL patients were stored in a nuclear medicine station for subsequent analysis. These were classified by a consensus of nuclear medicine physicians into progressions, partial responses, mixed responses, complete responses, and relapses. The cases of each group were ordered by magnitude following visual analysis. Thereafter, a set of quantitative indicators designed to model the cancer evolution magnitude within each group were computed using semiautomatic and automatic image-processing techniques. Performance evaluation of the proposed indicators was measured by a correlation analysis with the expert-based visual analysis. RESULTS: The set of proposed indicators achieved Pearson's correlation results in each group with respect to the expert-based visual analysis: 80.2% in progressions, 77.1% in partial response, 68.3% in mixed response, 88.5% in complete response, and 100% in relapse. In the progression and mixed response groups, the proposed indicators outperformed the common indicators used in clinical practice [changes in metabolic tumor volume, mean, maximum, peak standardized uptake value (SUV mean, SUV max, SUV peak), and total lesion glycolysis] by more than 40%. CONCLUSION: Computing global indicators of NHL response using PET-CT imaging techniques offers a strong correlation with the associated expert-based visual analysis, motivating the future incorporation of such quantitative and highly observer-independent indicators in oncological decision making or treatment response evaluation scenarios.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	HuPBA;MILAB			Approved	no
	Call Number	Admin @ si @ SDE2015			Serial	2605
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	Author	I. Sorodoc; S. Pezzelle; A. Herbelot; Mariella Dimiccoli; R. Bernardi
	Title	Learning quantification from images: A structured neural architecture			Type	Journal Article
	Year	2018	Publication	Natural Language Engineering	Abbreviated Journal	NLE
	Volume	24	Issue	3	Pages	363-392
	Keywords
	Abstract	Major advances have recently been made in merging language and vision representations. Most tasks considered so far have confined themselves to the processing of objects and lexicalised relations amongst objects (content words). We know, however, that humans (even pre-school children) can abstract over raw multimodal data to perform certain types of higher level reasoning, expressed in natural language by function words. A case in point is given by their ability to learn quantifiers, i.e. expressions like few, some and all. From formal semantics and cognitive linguistics, we know that quantifiers are relations over sets which, as a simplification, we can see as proportions. For instance, in most fish are red, most encodes the proportion of fish which are red fish. In this paper, we study how well current neural network strategies model such relations. We propose a task where, given an image and a query expressed by an object–property pair, the system must return a quantifier expressing which proportions of the queried object have the queried property. Our contributions are twofold. First, we show that the best performance on this task involves coupling state-of-the-art attention mechanisms with a network architecture mirroring the logical structure assigned to quantifiers by classic linguistic formalisation. Second, we introduce a new balanced dataset of image scenarios associated with quantification queries, which we hope will foster further research in this area.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	MILAB; no menciona			Approved	no
	Call Number	Admin @ si @ SPH2018			Serial	3021
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	Author	David Vazquez; Antonio Lopez; Daniel Ponsa; Javier Marin
	Title	Cool world: domain adaptation of virtual and real worlds for human detection using active learning			Type	Conference Article
	Year	2011	Publication	NIPS Domain Adaptation Workshop: Theory and Application	Abbreviated Journal	NIPS-DA
	Volume		Issue		Pages
	Keywords	Pedestrian Detection; Virtual; Domain Adaptation; Active Learning
	Abstract	Image based human detection is of paramount interest for different applications. The most promising human detectors rely on discriminatively learnt classifiers, i.e., trained with labelled samples. However, labelling is a manual intensive task, especially in cases like human detection where it is necessary to provide at least bounding boxes framing the humans for training. To overcome such problem, in Marin et al. we have proposed the use of a virtual world where the labels of the different objects are obtained automatically. This means that the human models (classifiers) are learnt using the appearance of realistic computer graphics. Later, these models are used for human detection in images of the real world. The results of this technique are surprisingly good. However, these are not always as good as the classical approach of training and testing with data coming from the same camera and the same type of scenario. Accordingly, in Vazquez et al. we cast the problem as one of supervised domain adaptation. In doing so, we assume that a small amount of manually labelled samples from real-world images is required. To collect these labelled samples we use an active learning technique. Thus, ultimately our human model is learnt by the combination of virtual- and real-world labelled samples which, to the best of our knowledge, was not done before. Here, we term such combined space cool world. In this extended abstract we summarize our proposal, and include quantitative results from Vazquez et al. showing its validity.
	Address	Granada, Spain
	Corporate Author				Thesis
	Publisher		Place of Publication	Granada, Spain	Editor
	Language	English	Summary Language	English	Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference	DA-NIPS
	Notes	ADAS			Approved	no
	Call Number	ADAS @ adas @ VLP2011b			Serial	1756
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	Author	Matthias S. Keil
	Title	Smooth Gradient Representations as a Unifying Account of Chevreul’s Illusion, Mach Bands, and a Variant of the Ehrenstein Disk			Type	Journal
	Year	2006	Publication	Neural Computation	Abbreviated Journal	NEURALCOMPUT
	Volume	18	Issue	4	Pages	871–903
	Keywords
	Abstract
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes				Approved	no
	Call Number	Admin @ si @ Kei2006			Serial	633
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