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Author Albert Ali Salah; Theo Gevers; Nicu Sebe; Alessandro Vinciarelli edit  openurl
  Title Computer Vision for Ambient Intelligence Type Journal Article
  Year 2011 Publication Journal of Ambient Intelligence and Smart Environments Abbreviated Journal (up) JAISE  
  Volume 3 Issue 3 Pages 187-191  
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  Notes ISE Approved no  
  Call Number Admin @ si @ SGS2011a Serial 1725  
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Author Antonio Hernandez; Nadezhda Zlateva; Alexander Marinov; Miguel Reyes; Petia Radeva; Dimo Dimov; Sergio Escalera edit   pdf
doi  openurl
  Title Human Limb Segmentation in Depth Maps based on Spatio-Temporal Graph Cuts Optimization Type Journal Article
  Year 2012 Publication Journal of Ambient Intelligence and Smart Environments Abbreviated Journal (up) JAISE  
  Volume 4 Issue 6 Pages 535-546  
  Keywords Multi-modal vision processing; Random Forest; Graph-cuts; multi-label segmentation; human body segmentation  
  Abstract We present a framework for object segmentation using depth maps based on Random Forest and Graph-cuts theory, and apply it to the segmentation of human limbs. First, from a set of random depth features, Random Forest is used to infer a set of label probabilities for each data sample. This vector of probabilities is used as unary term in α−β swap Graph-cuts algorithm. Moreover, depth values of spatio-temporal neighboring data points are used as boundary potentials. Results on a new multi-label human depth data set show high performance in terms of segmentation overlapping of the novel methodology compared to classical approaches.  
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  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 1876-1364 ISBN Medium  
  Area Expedition Conference  
  Notes MILAB;HuPBA Approved no  
  Call Number Admin @ si @ HZM2012a Serial 2006  
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Author Iban Berganzo-Besga; Hector A. Orengo; Felipe Lumbreras; Paloma Aliende; Monica N. Ramsey edit  doi
openurl 
  Title Automated detection and classification of multi-cell Phytoliths using Deep Learning-Based Algorithms Type Journal Article
  Year 2022 Publication Journal of Archaeological Science Abbreviated Journal (up) JArchSci  
  Volume 148 Issue Pages 105654  
  Keywords  
  Abstract This paper presents an algorithm for automated detection and classification of multi-cell phytoliths, one of the major components of many archaeological and paleoenvironmental deposits. This identification, based on phytolith wave pattern, is made using a pretrained VGG19 deep learning model. This approach has been tested in three key phytolith genera for the study of agricultural origins in Near East archaeology: Avena, Hordeum and Triticum. Also, this classification has been validated at species-level using Triticum boeoticum and dicoccoides images. Due to the diversity of microscopes, cameras and chemical treatments that can influence images of phytolith slides, three types of data augmentation techniques have been implemented: rotation of the images at 45-degree angles, random colour and brightness jittering, and random blur/sharpen. The implemented workflow has resulted in an overall accuracy of 93.68% for phytolith genera, improving previous attempts. The algorithm has also demonstrated its potential to automatize the classification of phytoliths species with an overall accuracy of 100%. The open code and platforms employed to develop the algorithm assure the method's accessibility, reproducibility and reusability.  
  Address December 2022  
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  Series Editor Series Title Abbreviated Series Title  
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  Notes MSIAU; MACO; 600.167 Approved no  
  Call Number Admin @ si @ BOL2022 Serial 3753  
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Author Carlos Martin-Isla; Victor M Campello; Cristian Izquierdo; Kaisar Kushibar; Carla Sendra Balcells; Polyxeni Gkontra; Alireza Sojoudi; Mitchell J Fulton; Tewodros Weldebirhan Arega; Kumaradevan Punithakumar; Lei Li; Xiaowu Sun; Yasmina Al Khalil; Di Liu; Sana Jabbar; Sandro Queiros; Francesco Galati; Moona Mazher; Zheyao Gao; Marcel Beetz; Lennart Tautz; Christoforos Galazis; Marta Varela; Markus Hullebrand; Vicente Grau; Xiahai Zhuang; Domenec Puig; Maria A Zuluaga; Hassan Mohy Ud Din; Dimitris Metaxas; Marcel Breeuwer; Rob J van der Geest; Michelle Noga; Stephanie Bricq; Mark E Rentschler; Andrea Guala; Steffen E Petersen; Sergio Escalera; Jose F Rodriguez Palomares; Karim Lekadir edit  url
doi  openurl
  Title Deep Learning Segmentation of the Right Ventricle in Cardiac MRI: The M&ms Challenge Type Journal Article
  Year 2023 Publication IEEE Journal of Biomedical and Health Informatics Abbreviated Journal (up) JBHI  
  Volume 27 Issue 7 Pages 3302-3313  
  Keywords  
  Abstract In recent years, several deep learning models have been proposed to accurately quantify and diagnose cardiac pathologies. These automated tools heavily rely on the accurate segmentation of cardiac structures in MRI images. However, segmentation of the right ventricle is challenging due to its highly complex shape and ill-defined borders. Hence, there is a need for new methods to handle such structure's geometrical and textural complexities, notably in the presence of pathologies such as Dilated Right Ventricle, Tricuspid Regurgitation, Arrhythmogenesis, Tetralogy of Fallot, and Inter-atrial Communication. The last MICCAI challenge on right ventricle segmentation was held in 2012 and included only 48 cases from a single clinical center. As part of the 12th Workshop on Statistical Atlases and Computational Models of the Heart (STACOM 2021), the M&Ms-2 challenge was organized to promote the interest of the research community around right ventricle segmentation in multi-disease, multi-view, and multi-center cardiac MRI. Three hundred sixty CMR cases, including short-axis and long-axis 4-chamber views, were collected from three Spanish hospitals using nine different scanners from three different vendors, and included a diverse set of right and left ventricle pathologies. The solutions provided by the participants show that nnU-Net achieved the best results overall. However, multi-view approaches were able to capture additional information, highlighting the need to integrate multiple cardiac diseases, views, scanners, and acquisition protocols to produce reliable automatic cardiac segmentation algorithms.  
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  Notes HUPBA Approved no  
  Call Number Admin @ si @ MCI2023 Serial 3880  
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Author Francisco Blanco; Felipe Lumbreras; Joan Serrat; Roswitha Siener; Silvia Serranti; Giuseppe Bonifazi; Montserrat Lopez Mesas; Manuel Valiente edit  doi
openurl 
  Title Taking advantage of Hyperspectral Imaging classification of urinary stones against conventional IR Spectroscopy Type Journal Article
  Year 2014 Publication Journal of Biomedical Optics Abbreviated Journal (up) JBiO  
  Volume 19 Issue 12 Pages 126004-1 - 126004-9  
  Keywords  
  Abstract The analysis of urinary stones is mandatory for the best management of the disease after the stone passage in order to prevent further stone episodes. Thus the use of an appropriate methodology for an individualized stone analysis becomes a key factor for giving the patient the most suitable treatment. A recently developed hyperspectral imaging methodology, based on pixel-to-pixel analysis of near-infrared spectral images, is compared to the reference technique in stone analysis, infrared (IR) spectroscopy. The developed classification model yields >90% correct classification rate when compared to IR and is able to precisely locate stone components within the structure of the stone with a 15 µm resolution. Due to the little sample pretreatment, low analysis time, good performance of the model, and the automation of the measurements, they become analyst independent; this methodology can be considered to become a routine analysis for clinical laboratories.  
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  Notes ADAS; 600.076 Approved no  
  Call Number Admin @ si @ BLS2014 Serial 2563  
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Author Mariella Dimiccoli; Benoît Girard; Alain Berthoz; Daniel Bennequin edit   pdf
doi  openurl
  Title Striola Magica: a functional explanation of otolith organs Type Journal Article
  Year 2013 Publication Journal of Computational Neuroscience Abbreviated Journal (up) JCN  
  Volume 35 Issue 2 Pages 125-154  
  Keywords Otolith organs ;Striola; Vestibular pathway  
  Abstract Otolith end organs of vertebrates sense linear accelerations of the head and gravitation. The hair cells on their epithelia are responsible for transduction. In mammals, the striola, parallel to the line where hair cells reverse their polarization, is a narrow region centered on a curve with curvature and torsion. It has been shown that the striolar region is functionally different from the rest, being involved in a phasic vestibular pathway. We propose a mathematical and computational model that explains the necessity of this amazing geometry for the striola to be able to carry out its function. Our hypothesis, related to the biophysics of the hair cells and to the physiology of their afferent neurons, is that striolar afferents collect information from several type I hair cells to detect the jerk in a large domain of acceleration directions. This predicts a mean number of two calyces for afferent neurons, as measured in rodents. The domain of acceleration directions sensed by our striolar model is compatible with the experimental results obtained on monkeys considering all afferents. Therefore, the main result of our study is that phasic and tonic vestibular afferents cover the same geometrical fields, but at different dynamical and frequency domains.  
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  Publisher Springer US Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 1573-6873. 2013 ISBN Medium  
  Area Expedition Conference  
  Notes MILAB Approved no  
  Call Number Admin @ si @DBG2013 Serial 2787  
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Author Onur Ferhat; Fernando Vilariño; F. Javier Sanchez edit  url
openurl 
  Title A cheap portable eye-tracker solution for common setups. Type Journal Article
  Year 2014 Publication Journal of Eye Movement Research Abbreviated Journal (up) JEMR  
  Volume 7 Issue 3 Pages 1-10  
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  Abstract We analyze the feasibility of a cheap eye-tracker where the hardware consists of a single webcam and a Raspberry Pi device. Our aim is to discover the limits of such a system and to see whether it provides an acceptable performance. We base our work on the open source Opengazer (Zielinski, 2013) and we propose several improvements to create a robust, real-time system which can work on a computer with 30Hz sampling rate. After assessing the accuracy of our eye-tracker in elaborated experiments involving 12 subjects under 4 different system setups, we install it on a Raspberry Pi to create a portable stand-alone eye-tracker which achieves 1.42° horizontal accuracy with 3Hz refresh rate for a building cost of 70 Euros.  
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  Notes ;SIAI Approved no  
  Call Number Admin @ si @ FVS2014 Serial 2435  
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Author David Vazquez; Jorge Bernal; F. Javier Sanchez; Gloria Fernandez Esparrach; Antonio Lopez; Adriana Romero; Michal Drozdzal; Aaron Courville edit   pdf
url  openurl
  Title A Benchmark for Endoluminal Scene Segmentation of Colonoscopy Images Type Journal Article
  Year 2017 Publication Journal of Healthcare Engineering Abbreviated Journal (up) JHCE  
  Volume Issue Pages 2040-2295  
  Keywords Colonoscopy images; Deep Learning; Semantic Segmentation  
  Abstract Colorectal cancer (CRC) is the third cause of cancer death world-wide. Currently, the standard approach to reduce CRC-related mortality is to perform regular screening in search for polyps and colonoscopy is the screening tool of choice. The main limitations of this screening procedure are polyp miss- rate and inability to perform visual assessment of polyp malignancy. These drawbacks can be reduced by designing Decision Support Systems (DSS) aim- ing to help clinicians in the different stages of the procedure by providing endoluminal scene segmentation. Thus, in this paper, we introduce an extended benchmark of colonoscopy image segmentation, with the hope of establishing a new strong benchmark for colonoscopy image analysis research. The proposed dataset consists of 4 relevant classes to inspect the endolumninal scene, tar- geting different clinical needs. Together with the dataset and taking advantage of advances in semantic segmentation literature, we provide new baselines by training standard fully convolutional networks (FCN). We perform a compar- ative study to show that FCN significantly outperform, without any further post-processing, prior results in endoluminal scene segmentation, especially with respect to polyp segmentation and localization.  
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  Notes ADAS; MV; 600.075; 600.085; 600.076; 601.281; 600.118 Approved no  
  Call Number VBS2017b Serial 2940  
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Author Arnau Ramisa; Alex Goldhoorn; David Aldavert; Ricardo Toledo; Ramon Lopez de Mantaras edit  doi
openurl 
  Title Combining Invariant Features and the ALV Homing Method for Autonomous Robot Navigation Based on Panoramas Type Journal Article
  Year 2011 Publication Journal of Intelligent and Robotic Systems Abbreviated Journal (up) JIRC  
  Volume 64 Issue 3-4 Pages 625-649  
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  Abstract Biologically inspired homing methods, such as the Average Landmark Vector, are an interesting solution for local navigation due to its simplicity. However, usually they require a modification of the environment by placing artificial landmarks in order to work reliably. In this paper we combine the Average Landmark Vector with invariant feature points automatically detected in panoramic images to overcome this limitation. The proposed approach has been evaluated first in simulation and, as promising results are found, also in two data sets of panoramas from real world environments.  
  Address  
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  Publisher Springer Netherlands Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 0921-0296 ISBN Medium  
  Area Expedition Conference  
  Notes RV;ADAS Approved no  
  Call Number Admin @ si @ RGA2011 Serial 1728  
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Author Arnau Ramisa; David Aldavert; Shrihari Vasudevan; Ricardo Toledo; Ramon Lopez de Mantaras edit  doi
openurl 
  Title Evaluation of Three Vision Based Object Perception Methods for a Mobile Robot Type Journal Article
  Year 2012 Publication Journal of Intelligent and Robotic Systems Abbreviated Journal (up) JIRC  
  Volume 68 Issue 2 Pages 185-208  
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  Abstract This paper addresses visual object perception applied to mobile robotics. Being able to perceive household objects in unstructured environments is a key capability in order to make robots suitable to perform complex tasks in home environments. However, finding a solution for this task is daunting: it requires the ability to handle the variability in image formation in a moving camera with tight time constraints. The paper brings to attention some of the issues with applying three state of the art object recognition and detection methods in a mobile robotics scenario, and proposes methods to deal with windowing/segmentation. Thus, this work aims at evaluating the state-of-the-art in object perception in an attempt to develop a lightweight solution for mobile robotics use/research in typical indoor settings.  
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  Publisher Springer Netherlands Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 0921-0296 ISBN Medium  
  Area Expedition Conference  
  Notes ADAS Approved no  
  Call Number Admin @ si @ RAV2012 Serial 2150  
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Author Daniela Rato; Miguel Oliveira; Vitor Santos; Manuel Gomes; Angel Sappa edit  doi
openurl 
  Title A sensor-to-pattern calibration framework for multi-modal industrial collaborative cells Type Journal Article
  Year 2022 Publication Journal of Manufacturing Systems Abbreviated Journal (up) JMANUFSYST  
  Volume 64 Issue Pages 497-507  
  Keywords Calibration; Collaborative cell; Multi-modal; Multi-sensor  
  Abstract Collaborative robotic industrial cells are workspaces where robots collaborate with human operators. In this context, safety is paramount, and for that a complete perception of the space where the collaborative robot is inserted is necessary. To ensure this, collaborative cells are equipped with a large set of sensors of multiple modalities, covering the entire work volume. However, the fusion of information from all these sensors requires an accurate extrinsic calibration. The calibration of such complex systems is challenging, due to the number of sensors and modalities, and also due to the small overlapping fields of view between the sensors, which are positioned to capture different viewpoints of the cell. This paper proposes a sensor to pattern methodology that can calibrate a complex system such as a collaborative cell in a single optimization procedure. Our methodology can tackle RGB and Depth cameras, as well as LiDARs. Results show that our methodology is able to accurately calibrate a collaborative cell containing three RGB cameras, a depth camera and three 3D LiDARs.  
  Address  
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  Publisher Science Direct Place of Publication Editor  
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  Notes MSIAU; MACO Approved no  
  Call Number Admin @ si @ ROS2022 Serial 3750  
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Author Frederic Sampedro; Sergio Escalera; Anna Domenech; Ignasi Carrio edit  doi
openurl 
  Title Automatic Tumor Volume Segmentation in Whole-Body PET/CT Scans: A Supervised Learning Approach Source Type Journal Article
  Year 2015 Publication Journal of Medical Imaging and Health Informatics Abbreviated Journal (up) JMIHI  
  Volume 5 Issue 2 Pages 192-201  
  Keywords CONTEXTUAL CLASSIFICATION; PET/CT; SUPERVISED LEARNING; TUMOR SEGMENTATION; WHOLE BODY  
  Abstract Whole-body 3D PET/CT tumoral volume segmentation provides relevant diagnostic and prognostic information in clinical oncology and nuclear medicine. Carrying out this procedure manually by a medical expert is time consuming and suffers from inter- and intra-observer variabilities. In this paper, a completely automatic approach to this task is presented. First, the problem is stated and described both in clinical and technological terms. Then, a novel supervised learning segmentation framework is introduced. The segmentation by learning approach is defined within a Cascade of Adaboost classifiers and a 3D contextual proposal of Multiscale Stacked Sequential Learning. Segmentation accuracy results on 200 Breast Cancer whole body PET/CT volumes show mean 49% sensitivity, 99.993% specificity and 39% Jaccard overlap Index, which represent good performance results both at the clinical and technological level.  
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  Notes HuPBA;MILAB Approved no  
  Call Number Admin @ si @ SED2015 Serial 2584  
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Author Frederic Sampedro; Anna Domenech; Sergio Escalera edit  url
doi  openurl
  Title Static and dynamic computational cancer spread quantification in whole body FDG-PET/CT scans Type Journal Article
  Year 2014 Publication Journal of Medical Imaging and Health Informatics Abbreviated Journal (up) JMIHI  
  Volume 4 Issue 6 Pages 825-831  
  Keywords CANCER SPREAD; COMPUTER AIDED DIAGNOSIS; MEDICAL IMAGING; TUMOR QUANTIFICATION  
  Abstract In this work we address the computational cancer spread quantification scenario in whole body FDG-PET/CT scans. At the static level, this setting can be modeled as a clustering problem on the set of 3D connected components of the whole body PET tumoral segmentation mask carried out by nuclear medicine physicians. At the dynamic level, and ad-hoc algorithm is proposed in order to quantify the cancer spread time evolution which, when combined with other existing indicators, gives rise to the metabolic tumor volume-aggressiveness-spread time evolution chart, a novel tool that we claim that would prove useful in nuclear medicine and oncological clinical or research scenarios. Good performance results of the proposed methodologies both at the clinical and technological level are shown using a dataset of 48 segmented whole body FDG-PET/CT scans.  
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  Notes HuPBA;MILAB Approved no  
  Call Number Admin @ si @ SDE2014b Serial 2548  
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Author Diana Ramirez Cifuentes; Ana Freire; Ricardo Baeza Yates; Joaquim Punti Vidal; Pilar Medina Bravo; Diego Velazquez; Josep M. Gonfaus; Jordi Gonzalez edit  url
doi  openurl
  Title Detection of Suicidal Ideation on Social Media: Multimodal, Relational, and Behavioral Analysis Type Journal Article
  Year 2020 Publication Journal of Medical Internet Research Abbreviated Journal (up) JMIR  
  Volume 22 Issue 7 Pages e17758  
  Keywords  
  Abstract Background:
Suicide risk assessment usually involves an interaction between doctors and patients. However, a significant number of people with mental disorders receive no treatment for their condition due to the limited access to mental health care facilities; the reduced availability of clinicians; the lack of awareness; and stigma, neglect, and discrimination surrounding mental disorders. In contrast, internet access and social media usage have increased significantly, providing experts and patients with a means of communication that may contribute to the development of methods to detect mental health issues among social media users.

Objective:
This paper aimed to describe an approach for the suicide risk assessment of Spanish-speaking users on social media. We aimed to explore behavioral, relational, and multimodal data extracted from multiple social platforms and develop machine learning models to detect users at risk.

Methods:
We characterized users based on their writings, posting patterns, relations with other users, and images posted. We also evaluated statistical and deep learning approaches to handle multimodal data for the detection of users with signs of suicidal ideation (suicidal ideation risk group). Our methods were evaluated over a dataset of 252 users annotated by clinicians. To evaluate the performance of our models, we distinguished 2 control groups: users who make use of suicide-related vocabulary (focused control group) and generic random users (generic control group).

Results:
We identified significant statistical differences between the textual and behavioral attributes of each of the control groups compared with the suicidal ideation risk group. At a 95% CI, when comparing the suicidal ideation risk group and the focused control group, the number of friends (P=.04) and median tweet length (P=.04) were significantly different. The median number of friends for a focused control user (median 578.5) was higher than that for a user at risk (median 372.0). Similarly, the median tweet length was higher for focused control users, with 16 words against 13 words of suicidal ideation risk users. Our findings also show that the combination of textual, visual, relational, and behavioral data outperforms the accuracy of using each modality separately. We defined text-based baseline models based on bag of words and word embeddings, which were outperformed by our models, obtaining an increase in accuracy of up to 8% when distinguishing users at risk from both types of control users.

Conclusions:
The types of attributes analyzed are significant for detecting users at risk, and their combination outperforms the results provided by generic, exclusively text-based baseline models. After evaluating the contribution of image-based predictive models, we believe that our results can be improved by enhancing the models based on textual and relational features. These methods can be extended and applied to different use cases related to other mental disorders.
 
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  Notes ISE; 600.098; 600.119 Approved no  
  Call Number Admin @ si @ RFB2020 Serial 3552  
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Author Diana Ramirez Cifuentes; Ana Freire; Ricardo Baeza Yates; Nadia Sanz Lamora; Aida Alvarez; Alexandre Gonzalez; Meritxell Lozano; Roger Llobet; Diego Velazquez; Josep M. Gonfaus; Jordi Gonzalez edit  url
doi  openurl
  Title Characterization of Anorexia Nervosa on Social Media: Textual, Visual, Relational, Behavioral, and Demographical Analysis Type Journal Article
  Year 2021 Publication Journal of Medical Internet Research Abbreviated Journal (up) JMIR  
  Volume 23 Issue 7 Pages e25925  
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  Abstract Background: Eating disorders are psychological conditions characterized by unhealthy eating habits. Anorexia nervosa (AN) is defined as the belief of being overweight despite being dangerously underweight. The psychological signs involve emotional and behavioral issues. There is evidence that signs and symptoms can manifest on social media, wherein both harmful and beneficial content is shared daily.  
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  Area Expedition Conference  
  Notes ISE Approved no  
  Call Number Admin @ si @ RFB2021 Serial 3665  
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