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| Author |
Guillermo Torres; Debora Gil; Antoni Rosell; S. Mena; Carles Sanchez |
| Title |
Virtual Radiomics Biopsy for the Histological Diagnosis of Pulmonary Nodules – Intermediate Results of the RadioLung Project |
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Journal Article |
| Year |
2023 |
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International Journal of Computer Assisted Radiology and Surgery |
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IJCARS |
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IAM |
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no |
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Admin @ si @ TGM2023 |
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3830 |
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Qingshan Chen; Zhenzhen Quan; Yifan Hu; Yujun Li; Zhi Liu; Mikhail Mozerov |
| Title |
MSIF: multi-spectrum image fusion method for cross-modality person re-identification |
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Journal Article |
| Year |
2023 |
Publication |
International Journal of Machine Learning and Cybernetics |
Abbreviated Journal |
IJMLC |
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Sketch-RGB cross-modality person re-identification (ReID) is a challenging task that aims to match a sketch portrait drawn by a professional artist with a full-body photo taken by surveillance equipment to deal with situations where the monitoring equipment is damaged at the accident scene. However, sketch portraits only provide highly abstract frontal body contour information and lack other important features such as color, pose, behavior, etc. The difference in saliency between the two modalities brings new challenges to cross-modality person ReID. To overcome this problem, this paper proposes a novel dual-stream model for cross-modality person ReID, which is able to mine modality-invariant features to reduce the discrepancy between sketch and camera images end-to-end. More specifically, we propose a multi-spectrum image fusion (MSIF) method, which aims to exploit the image appearance changes brought by multiple spectrums and guide the network to mine modality-invariant commonalities during training. It only processes the spectrum of the input images without adding additional calculations and model complexity, which can be easily integrated into other models. Moreover, we introduce a joint structure via a generalized mean pooling (GMP) layer and a self-attention (SA) mechanism to balance background and texture information and obtain the regional features with a large amount of information in the image. To further shrink the intra-class distance, a weighted regularized triplet (WRT) loss is developed without introducing additional hyperparameters. The model was first evaluated on the PKU Sketch ReID dataset, and extensive experimental results show that the Rank-1/mAP accuracy of our method is 87.00%/91.12%, reaching the current state-of-the-art performance. To further validate the effectiveness of our approach in handling cross-modality person ReID, we conducted experiments on two commonly used IR-RGB datasets (SYSU-MM01 and RegDB). The obtained results show that our method achieves competitive performance. These results confirm the ability of our method to effectively process images from different modalities. |
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LAMP |
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Admin @ si @ CQH2023 |
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3885 |
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Carlos Martin-Isla; Victor M Campello; Cristian Izquierdo; Kaisar Kushibar; Carla Sendra Balcells; Polyxeni Gkontra; Alireza Sojoudi; Mitchell J Fulton; Tewodros Weldebirhan Arega; Kumaradevan Punithakumar; Lei Li; Xiaowu Sun; Yasmina Al Khalil; Di Liu; Sana Jabbar; Sandro Queiros; Francesco Galati; Moona Mazher; Zheyao Gao; Marcel Beetz; Lennart Tautz; Christoforos Galazis; Marta Varela; Markus Hullebrand; Vicente Grau; Xiahai Zhuang; Domenec Puig; Maria A Zuluaga; Hassan Mohy Ud Din; Dimitris Metaxas; Marcel Breeuwer; Rob J van der Geest; Michelle Noga; Stephanie Bricq; Mark E Rentschler; Andrea Guala; Steffen E Petersen; Sergio Escalera; Jose F Rodriguez Palomares; Karim Lekadir |
| Title |
Deep Learning Segmentation of the Right Ventricle in Cardiac MRI: The M&ms Challenge |
Type |
Journal Article |
| Year |
2023 |
Publication |
IEEE Journal of Biomedical and Health Informatics |
Abbreviated Journal |
JBHI |
| Volume |
27 |
Issue |
7 |
Pages |
3302-3313 |
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In recent years, several deep learning models have been proposed to accurately quantify and diagnose cardiac pathologies. These automated tools heavily rely on the accurate segmentation of cardiac structures in MRI images. However, segmentation of the right ventricle is challenging due to its highly complex shape and ill-defined borders. Hence, there is a need for new methods to handle such structure's geometrical and textural complexities, notably in the presence of pathologies such as Dilated Right Ventricle, Tricuspid Regurgitation, Arrhythmogenesis, Tetralogy of Fallot, and Inter-atrial Communication. The last MICCAI challenge on right ventricle segmentation was held in 2012 and included only 48 cases from a single clinical center. As part of the 12th Workshop on Statistical Atlases and Computational Models of the Heart (STACOM 2021), the M&Ms-2 challenge was organized to promote the interest of the research community around right ventricle segmentation in multi-disease, multi-view, and multi-center cardiac MRI. Three hundred sixty CMR cases, including short-axis and long-axis 4-chamber views, were collected from three Spanish hospitals using nine different scanners from three different vendors, and included a diverse set of right and left ventricle pathologies. The solutions provided by the participants show that nnU-Net achieved the best results overall. However, multi-view approaches were able to capture additional information, highlighting the need to integrate multiple cardiac diseases, views, scanners, and acquisition protocols to produce reliable automatic cardiac segmentation algorithms. |
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HUPBA |
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no |
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Admin @ si @ MCI2023 |
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3880 |
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Adrien Pavao; Isabelle Guyon; Anne-Catherine Letournel; Dinh-Tuan Tran; Xavier Baro; Hugo Jair Escalante; Sergio Escalera; Tyler Thomas; Zhen Xu |
| Title |
CodaLab Competitions: An Open Source Platform to Organize Scientific Challenges |
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Journal Article |
| Year |
2023 |
Publication |
Journal of Machine Learning Research |
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JMLR |
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CodaLab Competitions is an open source web platform designed to help data scientists and research teams to crowd-source the resolution of machine learning problems through the organization of competitions, also called challenges or contests. CodaLab Competitions provides useful features such as multiple phases, results and code submissions, multi-score leaderboards, and jobs running
inside Docker containers. The platform is very flexible and can handle large scale experiments, by allowing organizers to upload large datasets and provide their own CPU or GPU compute workers. |
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HUPBA |
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no |
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Admin @ si @ PGL2023 |
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3973 |
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Mohamed Ali Souibgui; Asma Bensalah; Jialuo Chen; Alicia Fornes; Michelle Waldispühl |
| Title |
A User Perspective on HTR methods for the Automatic Transcription of Rare Scripts: The Case of Codex Runicus Just Accepted |
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Journal Article |
| Year |
2023 |
Publication |
ACM Journal on Computing and Cultural Heritage |
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JOCCH |
| Volume |
15 |
Issue |
4 |
Pages |
1-18 |
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Recent breakthroughs in Artificial Intelligence, Deep Learning and Document Image Analysis and Recognition have significantly eased the creation of digital libraries and the transcription of historical documents. However, for documents in rare scripts with few labelled training data available, current Handwritten Text Recognition (HTR) systems are too constraint. Moreover, research on HTR often focuses on technical aspects only, and rarely puts emphasis on implementing software tools for scholars in Humanities. In this article, we describe, compare and analyse different transcription methods for rare scripts. We evaluate their performance in a real use case of a medieval manuscript written in the runic script (Codex Runicus) and discuss advantages and disadvantages of each method from the user perspective. From this exhaustive analysis and comparison with a fully manual transcription, we raise conclusions and provide recommendations to scholars interested in using automatic transcription tools. |
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ACM |
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DAG; 600.121; 600.162; 602.230; 600.140 |
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no |
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Admin @ si @ SBC2023 |
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3732 |
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Jaykishan Patel; Alban Flachot; Javier Vazquez; David H. Brainard; Thomas S. A. Wallis; Marcus A. Brubaker; Richard F. Murray |
| Title |
A deep convolutional neural network trained to infer surface reflectance is deceived by mid-level lightness illusions |
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Journal Article |
| Year |
2023 |
Publication |
Journal of Vision |
Abbreviated Journal |
JV |
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23 |
Issue |
9 |
Pages |
4817-4817 |
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A long-standing view is that lightness illusions are by-products of strategies employed by the visual system to stabilize its perceptual representation of surface reflectance against changes in illumination. Computationally, one such strategy is to infer reflectance from the retinal image, and to base the lightness percept on this inference. CNNs trained to infer reflectance from images have proven successful at solving this problem under limited conditions. To evaluate whether these CNNs provide suitable starting points for computational models of human lightness perception, we tested a state-of-the-art CNN on several lightness illusions, and compared its behaviour to prior measurements of human performance. We trained a CNN (Yu & Smith, 2019) to infer reflectance from luminance images. The network had a 30-layer hourglass architecture with skip connections. We trained the network via supervised learning on 100K images, rendered in Blender, each showing randomly placed geometric objects (surfaces, cubes, tori, etc.), with random Lambertian reflectance patterns (solid, Voronoi, or low-pass noise), under randomized point+ambient lighting. The renderer also provided the ground-truth reflectance images required for training. After training, we applied the network to several visual illusions. These included the argyle, Koffka-Adelson, snake, White’s, checkerboard assimilation, and simultaneous contrast illusions, along with their controls where appropriate. The CNN correctly predicted larger illusions in the argyle, Koffka-Adelson, and snake images than in their controls. It also correctly predicted an assimilation effect in White's illusion. It did not, however, account for the checkerboard assimilation or simultaneous contrast effects. These results are consistent with the view that at least some lightness phenomena are by-products of a rational approach to inferring stable representations of physical properties from intrinsically ambiguous retinal images. Furthermore, they suggest that CNN models may be a promising starting point for new models of human lightness perception. |
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MACO; CIC |
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Admin @ si @ PFV2023 |
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3890 |
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Bhalaji Nagarajan; Marc Bolaños; Eduardo Aguilar; Petia Radeva |
| Title |
Deep ensemble-based hard sample mining for food recognition |
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Journal Article |
| Year |
2023 |
Publication |
Journal of Visual Communication and Image Representation |
Abbreviated Journal |
JVCIR |
| Volume |
95 |
Issue |
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103905 |
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Deep neural networks represent a compelling technique to tackle complex real-world problems, but are over-parameterized and often suffer from over- or under-confident estimates. Deep ensembles have shown better parameter estimations and often provide reliable uncertainty estimates that contribute to the robustness of the results. In this work, we propose a new metric to identify samples that are hard to classify. Our metric is defined as coincidence score for deep ensembles which measures the agreement of its individual models. The main hypothesis we rely on is that deep learning algorithms learn the low-loss samples better compared to large-loss samples. In order to compensate for this, we use controlled over-sampling on the identified ”hard” samples using proper data augmentation schemes to enable the models to learn those samples better. We validate the proposed metric using two public food datasets on different backbone architectures and show the improvements compared to the conventional deep neural network training using different performance metrics. |
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MILAB |
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no |
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Admin @ si @ NBA2023 |
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3844 |
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Reuben Dorent; Aaron Kujawa; Marina Ivory; Spyridon Bakas; Nikola Rieke; Samuel Joutard; Ben Glocker; Jorge Cardoso; Marc Modat; Kayhan Batmanghelich; Arseniy Belkov; Maria Baldeon Calisto; Jae Won Choi; Benoit M. Dawant; Hexin Dong; Sergio Escalera; Yubo Fan; Lasse Hansen; Mattias P. Heinrich; Smriti Joshi; Victoriya Kashtanova; Hyeon Gyu Kim; Satoshi Kondo; Christian N. Kruse; Susana K. Lai-Yuen; Hao Li; Han Liu; Buntheng Ly; Ipek Oguz; Hyungseob Shin; Boris Shirokikh; Zixian Su; Guotai Wang; Jianghao Wu; Yanwu Xu; Kai Yao; Li Zhang; Sebastien Ourselin, |
| Title |
CrossMoDA 2021 challenge: Benchmark of Cross-Modality Domain Adaptation techniques for Vestibular Schwannoma and Cochlea Segmentation |
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Journal Article |
| Year |
2023 |
Publication |
Medical Image Analysis |
Abbreviated Journal |
MIA |
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83 |
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102628 |
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Domain Adaptation; Segmen tation; Vestibular Schwnannoma |
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Domain Adaptation (DA) has recently raised strong interests in the medical imaging community. While a large variety of DA techniques has been proposed for image segmentation, most of these techniques have been validated either on private datasets or on small publicly available datasets. Moreover, these datasets mostly addressed single-class problems. To tackle these limitations, the Cross-Modality Domain Adaptation (crossMoDA) challenge was organised in conjunction with the 24th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2021). CrossMoDA is the first large and multi-class benchmark for unsupervised cross-modality DA. The challenge's goal is to segment two key brain structures involved in the follow-up and treatment planning of vestibular schwannoma (VS): the VS and the cochleas. Currently, the diagnosis and surveillance in patients with VS are performed using contrast-enhanced T1 (ceT1) MRI. However, there is growing interest in using non-contrast sequences such as high-resolution T2 (hrT2) MRI. Therefore, we created an unsupervised cross-modality segmentation benchmark. The training set provides annotated ceT1 (N=105) and unpaired non-annotated hrT2 (N=105). The aim was to automatically perform unilateral VS and bilateral cochlea segmentation on hrT2 as provided in the testing set (N=137). A total of 16 teams submitted their algorithm for the evaluation phase. The level of performance reached by the top-performing teams is strikingly high (best median Dice – VS:88.4%; Cochleas:85.7%) and close to full supervision (median Dice – VS:92.5%; Cochleas:87.7%). All top-performing methods made use of an image-to-image translation approach to transform the source-domain images into pseudo-target-domain images. A segmentation network was then trained using these generated images and the manual annotations provided for the source image. |
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HUPBA |
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Admin @ si @ DKI2023 |
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3706 |
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Lei Li; Fuping Wu; Sihan Wang; Xinzhe Luo; Carlos Martin-Isla; Shuwei Zhai; Jianpeng Zhang; Yanfei Liu; Zhen Zhang; Markus J. Ankenbrand; Haochuan Jiang; Xiaoran Zhang; Linhong Wang; Tewodros Weldebirhan Arega; Elif Altunok; Zhou Zhao; Feiyan Li; Jun Ma; Xiaoping Yang; Elodie Puybareau; Ilkay Oksuz; Stephanie Bricq; Weisheng Li;Kumaradevan Punithakumar; Sotirios A. Tsaftaris; Laura M. Schreiber; Mingjing Yang; Guocai Liu; Yong Xia; Guotai Wang; Sergio Escalera; Xiahai Zhuag |
| Title |
MyoPS: A benchmark of myocardial pathology segmentation combining three-sequence cardiac magnetic resonance images |
Type |
Journal Article |
| Year |
2023 |
Publication |
Medical Image Analysis |
Abbreviated Journal |
MIA |
| Volume |
87 |
Issue |
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Pages |
102808 |
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| Abstract |
Assessment of myocardial viability is essential in diagnosis and treatment management of patients suffering from myocardial infarction, and classification of pathology on the myocardium is the key to this assessment. This work defines a new task of medical image analysis, i.e., to perform myocardial pathology segmentation (MyoPS) combining three-sequence cardiac magnetic resonance (CMR) images, which was first proposed in the MyoPS challenge, in conjunction with MICCAI 2020. Note that MyoPS refers to both myocardial pathology segmentation and the challenge in this paper. The challenge provided 45 paired and pre-aligned CMR images, allowing algorithms to combine the complementary information from the three CMR sequences for pathology segmentation. In this article, we provide details of the challenge, survey the works from fifteen participants and interpret their methods according to five aspects, i.e., preprocessing, data augmentation, learning strategy, model architecture and post-processing. In addition, we analyze the results with respect to different factors, in order to examine the key obstacles and explore the potential of solutions, as well as to provide a benchmark for future research. The average Dice scores of submitted algorithms were and for myocardial scars and edema, respectively. We conclude that while promising results have been reported, the research is still in the early stage, and more in-depth exploration is needed before a successful application to the clinics. MyoPS data and evaluation tool continue to be publicly available upon registration via its homepage (www.sdspeople.fudan.edu.cn/zhuangxiahai/0/myops20/). |
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HUPBA |
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Admin @ si @ LWW2023a |
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3878 |
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Kunal Biswas; Palaiahnakote Shivakumara; Umapada Pal; Tong Lu; Michel Blumenstein; Josep Llados |
| Title |
Classification of aesthetic natural scene images using statistical and semantic features |
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Journal Article |
| Year |
2023 |
Publication |
Multimedia Tools and Applications |
Abbreviated Journal |
MTAP |
| Volume |
82 |
Issue |
9 |
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13507-13532 |
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Aesthetic image analysis is essential for improving the performance of multimedia image retrieval systems, especially from a repository of social media and multimedia content stored on mobile devices. This paper presents a novel method for classifying aesthetic natural scene images by studying the naturalness of image content using statistical features, and reading text in the images using semantic features. Unlike existing methods that focus only on image quality with human information, the proposed approach focuses on image features as well as text-based semantic features without human intervention to reduce the gap between subjectivity and objectivity in the classification. The aesthetic classes considered in this work are (i) Very Pleasant, (ii) Pleasant, (iii) Normal and (iv) Unpleasant. The naturalness is represented by features of focus, defocus, perceived brightness, perceived contrast, blurriness and noisiness, while semantics are represented by text recognition, description of the images and labels of images, profile pictures, and banner images. Furthermore, a deep learning model is proposed in a novel way to fuse statistical and semantic features for the classification of aesthetic natural scene images. Experiments on our own dataset and the standard datasets demonstrate that the proposed approach achieves 92.74%, 88.67% and 83.22% average classification rates on our own dataset, AVA dataset and CUHKPQ dataset, respectively. Furthermore, a comparative study of the proposed model with the existing methods shows that the proposed method is effective for the classification of aesthetic social media images. |
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DAG |
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Admin @ si @ BSP2023 |
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3873 |
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Razieh Rastgoo; Kourosh Kiani; Sergio Escalera |
| Title |
ZS-GR: zero-shot gesture recognition from RGB-D videos |
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Journal Article |
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2023 |
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Multimedia Tools and Applications |
Abbreviated Journal |
MTAP |
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82 |
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43781-43796 |
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Gesture Recognition (GR) is a challenging research area in computer vision. To tackle the annotation bottleneck in GR, we formulate the problem of Zero-Shot Gesture Recognition (ZS-GR) and propose a two-stream model from two input modalities: RGB and Depth videos. To benefit from the vision Transformer capabilities, we use two vision Transformer models, for human detection and visual features representation. We configure a transformer encoder-decoder architecture, as a fast and accurate human detection model, to overcome the challenges of the current human detection models. Considering the human keypoints, the detected human body is segmented into nine parts. A spatio-temporal representation from human body is obtained using a vision Transformer and a LSTM network. A semantic space maps the visual features to the lingual embedding of the class labels via a Bidirectional Encoder Representations from Transformers (BERT) model. We evaluated the proposed model on five datasets, Montalbano II, MSR Daily Activity 3D, CAD-60, NTU-60, and isoGD obtaining state-of-the-art results compared to state-of-the-art ZS-GR models as well as the Zero-Shot Action Recognition (ZS-AR). |
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HUPBA |
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Admin @ si @ RKE2023a |
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3879 |
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Razieh Rastgoo; Kourosh Kiani; Sergio Escalera |
| Title |
A deep co-attentive hand-based video question answering framework using multi-view skeleton |
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Journal Article |
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2023 |
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Multimedia Tools and Applications |
Abbreviated Journal |
MTAP |
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82 |
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1401–1429 |
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In this paper, we present a novel hand –based Video Question Answering framework, entitled Multi-View Video Question Answering (MV-VQA), employing the Single Shot Detector (SSD), Convolutional Neural Network (CNN), Long Short-Term Memory (LSTM), Bidirectional Encoder Representations from Transformers (BERT), and Co-Attention mechanism with RGB videos as the inputs. Our model includes three main blocks: vision, language, and attention. In the vision block, we employ a novel representation to obtain some efficient multiview features from the hand object using the combination of five 3DCNNs and one LSTM network. To obtain the question embedding, we use the BERT model in language block. Finally, we employ a co-attention mechanism on vision and language features to recognize the final answer. For the first time, we propose such a hand-based Video-QA framework including the multi-view hand skeleton features combined with the question embedding and co-attention mechanism. Our framework is capable of processing the arbitrary numbers of questions in the dataset annotations. There are different application domains for this framework. Here, as an application domain, we applied our framework to dynamic hand gesture recognition for the first time. Since the main object in dynamic hand gesture recognition is the human hand, we performed a step-by-step analysis of the hand detection and multi-view hand skeleton impact on the model performance. Evaluation results on five datasets, including two datasets in VideoQA, two datasets in dynamic hand gesture, and one dataset in hand action recognition show that MV-VQA outperforms state-of-the-art alternatives. |
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HUPBA |
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no |
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Admin @ si @ RKE2023b |
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3881 |
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| Author |
Ruben Tito; Dimosthenis Karatzas; Ernest Valveny |
| Title |
Hierarchical multimodal transformers for Multi-Page DocVQA |
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2023 |
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Pattern Recognition |
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PR |
| Volume |
144 |
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109834 |
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Document Visual Question Answering (DocVQA) refers to the task of answering questions from document images. Existing work on DocVQA only considers single-page documents. However, in real scenarios documents are mostly composed of multiple pages that should be processed altogether. In this work we extend DocVQA to the multi-page scenario. For that, we first create a new dataset, MP-DocVQA, where questions are posed over multi-page documents instead of single pages. Second, we propose a new hierarchical method, Hi-VT5, based on the T5 architecture, that overcomes the limitations of current methods to process long multi-page documents. The proposed method is based on a hierarchical transformer architecture where the encoder summarizes the most relevant information of every page and then, the decoder takes this summarized information to generate the final answer. Through extensive experimentation, we demonstrate that our method is able, in a single stage, to answer the questions and provide the page that contains the relevant information to find the answer, which can be used as a kind of explainability measure. |
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ISSN 0031-3203 |
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DAG; 600.155; 600.121 |
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Admin @ si @ TKV2023 |
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3825 |
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| Author |
Souhail Bakkali; Zuheng Ming; Mickael Coustaty; Marçal Rusiñol; Oriol Ramos Terrades |
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VLCDoC: Vision-Language Contrastive Pre-Training Model for Cross-Modal Document Classification |
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Journal Article |
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2023 |
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Pattern Recognition |
Abbreviated Journal |
PR |
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139 |
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109419 |
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Multimodal learning from document data has achieved great success lately as it allows to pre-train semantically meaningful features as a prior into a learnable downstream approach. In this paper, we approach the document classification problem by learning cross-modal representations through language and vision cues, considering intra- and inter-modality relationships. Instead of merging features from different modalities into a common representation space, the proposed method exploits high-level interactions and learns relevant semantic information from effective attention flows within and across modalities. The proposed learning objective is devised between intra- and inter-modality alignment tasks, where the similarity distribution per task is computed by contracting positive sample pairs while simultaneously contrasting negative ones in the common feature representation space}. Extensive experiments on public document classification datasets demonstrate the effectiveness and the generalization capacity of our model on both low-scale and large-scale datasets. |
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ISSN 0031-3203 |
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DAG; 600.140; 600.121 |
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Admin @ si @ BMC2023 |
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3826 |
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| Author |
Ruben Tito; Dimosthenis Karatzas; Ernest Valveny |
| Title |
Hierarchical multimodal transformers for Multipage DocVQA |
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Journal Article |
| Year |
2023 |
Publication |
Pattern Recognition |
Abbreviated Journal |
PR |
| Volume |
144 |
Issue |
109834 |
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Existing work on DocVQA only considers single-page documents. However, in real applications documents are mostly composed of multiple pages that should be processed altogether. In this work, we propose a new multimodal hierarchical method Hi-VT5, that overcomes the limitations of current methods to process long multipage documents. In contrast to previous hierarchical methods that focus on different semantic granularity (He et al., 2021) or different subtasks (Zhou et al., 2022) used in image classification. Our method is a hierarchical transformer architecture where the encoder learns to summarize the most relevant information of every page and then, the decoder uses this summarized representation to generate the final answer, following a bottom-up approach. Moreover, due to the lack of multipage DocVQA datasets, we also introduce MP-DocVQA, an extension of SP-DocVQA where questions are posed over multipage documents instead of single pages. Through extensive experimentation, we demonstrate that Hi-VT5 is able, in a single stage, to answer the questions and provide the page that contains the answer, which can be used as a kind of explainability measure. |
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DAG |
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Admin @ si @ TKV2023 |
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3836 |
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