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Jean-Pascal Jacob; Mariella Dimiccoli; Lionel Moisan |
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Title |
Active skeleton for bacteria modeling |
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2016 |
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Computer Methods in Biomechanics and Biomedical Engineering: Imaging and Visualization |
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CMBBE |
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5 |
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4 |
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274-286 |
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Bacteria modelling; medial axis; active contours; active skeleton; shape contraints |
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The investigation of spatio-temporal dynamics of bacterial cells and their molecular components requires automated image analysis tools to track cell shape properties and molecular component locations inside the cells. In the study of bacteria aging, the molecular components of interest are protein aggregates accumulated near bacteria boundaries. This particular location makes very ambiguous the correspondence between aggregates and cells, since computing accurately bacteria boundaries in phase-contrast time-lapse imaging is a challenging task. This paper proposes an active skeleton formulation for bacteria modeling which provides several advantages: an easy computation of shape properties (perimeter, length, thickness, orientation), an improved boundary accuracy in noisy images, and a natural bacteria-centered coordinate system that permits the intrinsic location of molecular components inside the cell. Starting from an initial skeleton estimate, the medial axis of the bacterium is obtained by minimizing an energy function which incorporates bacteria shape constraints. Experimental results on biological images and comparative evaluation of the performances validate the proposed approach for modeling cigar-shaped bacteria like Escherichia coli. The Image-J plugin of the proposed method can be found online at this http URL |
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MILAB |
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no |
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Admin @ si @ JDM2016 |
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2711 |
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Author |
Marc Bolaños; Mariella Dimiccoli; Petia Radeva |
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Title |
Towards Storytelling from Visual Lifelogging: An Overview |
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Journal Article |
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2017 |
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IEEE Transactions on Human-Machine Systems |
Abbreviated Journal |
THMS |
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47 |
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1 |
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77 - 90 |
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Visual lifelogging consists of acquiring images that capture the daily experiences of the user by wearing a camera over a long period of time. The pictures taken offer considerable potential for knowledge mining concerning how people live their lives, hence, they open up new opportunities for many potential applications in fields including healthcare, security, leisure and
the quantified self. However, automatically building a story from a huge collection of unstructured egocentric data presents major challenges. This paper provides a thorough review of advances made so far in egocentric data analysis, and in view of the current state of the art, indicates new lines of research to move us towards storytelling from visual lifelogging. |
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MILAB; 601.235 |
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Admin @ si @ BDR2017 |
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2712 |
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Mariella Dimiccoli; Marc Bolaños; Estefania Talavera; Maedeh Aghaei; Stavri G. Nikolov; Petia Radeva |
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Title |
SR-Clustering: Semantic Regularized Clustering for Egocentric Photo Streams Segmentation |
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Journal Article |
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2017 |
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Computer Vision and Image Understanding |
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CVIU |
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155 |
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55-69 |
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While wearable cameras are becoming increasingly popular, locating relevant information in large unstructured collections of egocentric images is still a tedious and time consuming processes. This paper addresses the problem of organizing egocentric photo streams acquired by a wearable camera into semantically meaningful segments. First, contextual and semantic information is extracted for each image by employing a Convolutional Neural Networks approach. Later, by integrating language processing, a vocabulary of concepts is defined in a semantic space. Finally, by exploiting the temporal coherence in photo streams, images which share contextual and semantic attributes are grouped together. The resulting temporal segmentation is particularly suited for further analysis, ranging from activity and event recognition to semantic indexing and summarization. Experiments over egocentric sets of nearly 17,000 images, show that the proposed approach outperforms state-of-the-art methods. |
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MILAB; 601.235 |
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Admin @ si @ DBT2017 |
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2714 |
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Author |
Ciprian Corneanu; Marc Oliu; Jeffrey F. Cohn; Sergio Escalera |
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Title |
Survey on RGB, 3D, Thermal, and Multimodal Approaches for Facial Expression Recognition: History |
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Year |
2016 |
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IEEE Transactions on Pattern Analysis and Machine Intelligence |
Abbreviated Journal |
TPAMI |
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28 |
Issue |
8 |
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1548-1568 |
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Keywords |
Facial expression; affect; emotion recognition; RGB; 3D; thermal; multimodal |
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Facial expressions are an important way through which humans interact socially. Building a system capable of automatically recognizing facial expressions from images and video has been an intense field of study in recent years. Interpreting such expressions remains challenging and much research is needed about the way they relate to human affect. This paper presents a general overview of automatic RGB, 3D, thermal and multimodal facial expression analysis. We define a new taxonomy for the field, encompassing all steps from face detection to facial expression recognition, and describe and classify the state of the art methods accordingly. We also present the important datasets and the bench-marking of most influential methods. We conclude with a general discussion about trends, important questions and future lines of research. |
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HuPBA;MILAB; |
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no |
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Call Number |
Admin @ si @ COC2016 |
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2718 |
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Author |
Mariella Dimiccoli; Jean-Pascal Jacob; Lionel Moisan |
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Title |
Particle detection and tracking in fluorescence time-lapse imaging: a contrario approach |
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Journal Article |
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Year |
2016 |
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Journal of Machine Vision and Applications |
Abbreviated Journal |
MVAP |
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27 |
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511-527 |
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Keywords |
particle detection; particle tracking; a-contrario approach; time-lapse fluorescence imaging |
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In this work, we propose a probabilistic approach for the detection and the
tracking of particles on biological images. In presence of very noised and poor
quality data, particles and trajectories can be characterized by an a-contrario
model, that estimates the probability of observing the structures of interest
in random data. This approach, first introduced in the modeling of human visual
perception and then successfully applied in many image processing tasks, leads
to algorithms that do not require a previous learning stage, nor a tedious
parameter tuning and are very robust to noise. Comparative evaluations against
a well established baseline show that the proposed approach outperforms the
state of the art. |
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MILAB; |
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Admin @ si @ DJM2016 |
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2735 |
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