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Fernando Vilariño; Panagiota Spyridonos; Fosca De Iorio; Jordi Vitria; Fernando Azpiroz; Petia Radeva |
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Title |
Intestinal Motility Assessment With Video Capsule Endoscopy: Automatic Annotation of Phasic Intestinal Contractions |
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2010 |
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IEEE Transactions on Medical Imaging |
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TMI |
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29 |
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2 |
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246-259 |
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Abstract  |
Intestinal motility assessment with video capsule endoscopy arises as a novel and challenging clinical fieldwork. This technique is based on the analysis of the patterns of intestinal contractions shown in a video provided by an ingestible capsule with a wireless micro-camera. The manual labeling of all the motility events requires large amount of time for offline screening in search of findings with low prevalence, which turns this procedure currently unpractical. In this paper, we propose a machine learning system to automatically detect the phasic intestinal contractions in video capsule endoscopy, driving a useful but not feasible clinical routine into a feasible clinical procedure. Our proposal is based on a sequential design which involves the analysis of textural, color, and blob features together with SVM classifiers. Our approach tackles the reduction of the imbalance rate of data and allows the inclusion of domain knowledge as new stages in the cascade. We present a detailed analysis, both in a quantitative and a qualitative way, by providing several measures of performance and the assessment study of interobserver variability. Our system performs at 70% of sensitivity for individual detection, whilst obtaining equivalent patterns to those of the experts for density of contractions. |
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0278-0062 |
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800 |
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MILAB;MV;OR;SIAI |
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BCNPCL @ bcnpcl @ VSD2010; IAM @ iam @ VSI2010 |
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1281 |
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Santiago Segui; Michal Drozdzal; Ekaterina Zaytseva; Fernando Azpiroz; Petia Radeva; Jordi Vitria |
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Title |
Detection of wrinkle frames in endoluminal videos using betweenness centrality measures for images |
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2014 |
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IEEE Transactions on Information Technology in Biomedicine |
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TITB |
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18 |
Issue |
6 |
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1831-1838 |
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Keywords |
Wireless Capsule Endoscopy; Small Bowel Motility Dysfunction; Contraction Detection; Structured Prediction; Betweenness Centrality |
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Abstract |
Intestinal contractions are one of the most important events to diagnose motility pathologies of the small intestine. When visualized by wireless capsule endoscopy (WCE), the sequence of frames that represents a contraction is characterized by a clear wrinkle structure in the central frames that corresponds to the folding of the intestinal wall. In this paper we present a new method to robustly detect wrinkle frames in full WCE videos by using a new mid-level image descriptor that is based on a centrality measure proposed for graphs. We present an extended validation, carried out in a very large database, that shows that the proposed method achieves state of the art performance for this task. |
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OR; MILAB; 600.046;MV |
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Admin @ si @ SDZ2014 |
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2385 |
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Mariella Dimiccoli; Jean-Pascal Jacob; Lionel Moisan |
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Title |
Particle detection and tracking in fluorescence time-lapse imaging: a contrario approach |
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2016 |
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Journal of Machine Vision and Applications |
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MVAP |
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27 |
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511-527 |
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particle detection; particle tracking; a-contrario approach; time-lapse fluorescence imaging |
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In this work, we propose a probabilistic approach for the detection and the
tracking of particles on biological images. In presence of very noised and poor
quality data, particles and trajectories can be characterized by an a-contrario
model, that estimates the probability of observing the structures of interest
in random data. This approach, first introduced in the modeling of human visual
perception and then successfully applied in many image processing tasks, leads
to algorithms that do not require a previous learning stage, nor a tedious
parameter tuning and are very robust to noise. Comparative evaluations against
a well established baseline show that the proposed approach outperforms the
state of the art. |
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MILAB; |
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Admin @ si @ DJM2016 |
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2735 |
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Author |
Pierluigi Casale; Oriol Pujol; Petia Radeva |
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Title |
Approximate polytope ensemble for one-class classification |
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Year |
2014 |
Publication |
Pattern Recognition |
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PR |
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47 |
Issue |
2 |
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854-864 |
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One-class classification; Convex hull; High-dimensionality; Random projections; Ensemble learning |
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In this work, a new one-class classification ensemble strategy called approximate polytope ensemble is presented. The main contribution of the paper is threefold. First, the geometrical concept of convex hull is used to define the boundary of the target class defining the problem. Expansions and contractions of this geometrical structure are introduced in order to avoid over-fitting. Second, the decision whether a point belongs to the convex hull model in high dimensional spaces is approximated by means of random projections and an ensemble decision process. Finally, a tiling strategy is proposed in order to model non-convex structures. Experimental results show that the proposed strategy is significantly better than state of the art one-class classification methods on over 200 datasets. |
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MILAB; 605.203 |
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Admin @ si @ CPR2014a |
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2469 |
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Frederic Sampedro; Sergio Escalera; Anna Puig |
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Title |
Iterative Multiclass Multiscale Stacked Sequential Learning: definition and application to medical volume segmentation |
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Year |
2014 |
Publication |
Pattern Recognition Letters |
Abbreviated Journal |
PRL |
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46 |
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1-10 |
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Keywords |
Machine learning; Sequential learning; Multi-class problems; Contextual learning; Medical volume segmentation |
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In this work we present the iterative multi-class multi-scale stacked sequential learning framework (IMMSSL), a novel learning scheme that is particularly suited for medical volume segmentation applications. This model exploits the inherent voxel contextual information of the structures of interest in order to improve its segmentation performance results. Without any feature set or learning algorithm prior assumption, the proposed scheme directly seeks to learn the contextual properties of a region from the predicted classifications of previous classifiers within an iterative scheme. Performance results regarding segmentation accuracy in three two-class and multi-class medical volume datasets show a significant improvement with respect to state of the art alternatives. Due to its easiness of implementation and its independence of feature space and learning algorithm, the presented machine learning framework could be taken into consideration as a first choice in complex volume segmentation scenarios. |
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HuPBA;MILAB |
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Admin @ si @ SEP2014 |
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2550 |
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