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J.P. Jacob; Mariella Dimiccoli; L. Moisan |
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Active skeleton for bacteria modelling |
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Journal Article |
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2017 |
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Computer Methods in Biomechanics and Biomedical Engineering: Imaging and Visualization |
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CMBBE |
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5 |
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4 |
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274-286 |
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The investigation of spatio-temporal dynamics of bacterial cells and their molecular components requires automated image analysis tools to track cell shape properties and molecular component locations inside the cells. In the study of bacteria aging, the molecular components of interest are protein aggregates accumulated near bacteria boundaries. This particular location makes very ambiguous the correspondence between aggregates and cells, since computing accurately bacteria boundaries in phase-contrast time-lapse imaging is a challenging task. This paper proposes an active skeleton formulation for bacteria modelling which provides several advantages: an easy computation of shape properties (perimeter, length, thickness and orientation), an improved boundary accuracy in noisy images and a natural bacteria-centred coordinate system that permits the intrinsic location of molecular components inside the cell. Starting from an initial skeleton estimate, the medial axis of the bacterium is obtained by minimising an energy function which incorporates bacteria shape constraints. Experimental results on biological images and comparative evaluation of the performances validate the proposed approach for modelling cigar-shaped bacteria like Escherichia coli. The Image-J plugin of the proposed method can be found online at http://fluobactracker.inrialpes.fr. |
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Taylor & Francis Group |
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MILAB; |
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Admin @ si @JDM2017 |
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2784 |
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Author |
Jose Garcia-Rodriguez; Isabelle Guyon; Sergio Escalera; Alexandra Psarrou; Andrew Lewis; Miguel Cazorla |
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Editorial: Special Issue on Computational Intelligence for Vision and Robotics |
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Journal Article |
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2017 |
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Neural Computing and Applications |
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Neural Computing and Applications |
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28 |
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5 |
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853–854 |
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HuPBA;MILAB; no menciona |
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no |
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Admin @ si @ GGE2017 |
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2845 |
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Karim Lekadir; Alfiia Galimzianova; Angels Betriu; Maria del Mar Vila; Laura Igual; Daniel L. Rubin; Elvira Fernandez-Giraldez; Petia Radeva; Sandy Napel |
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Title |
A Convolutional Neural Network for Automatic Characterization of Plaque Composition in Carotid Ultrasound |
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Journal Article |
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Year |
2017 |
Publication |
IEEE Journal Biomedical and Health Informatics |
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J-BHI |
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21 |
Issue |
1 |
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48-55 |
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Characterization of carotid plaque composition, more specifically the amount of lipid core, fibrous tissue, and calcified tissue, is an important task for the identification of plaques that are prone to rupture, and thus for early risk estimation of cardiovascular and cerebrovascular events. Due to its low costs and wide availability, carotid ultrasound has the potential to become the modality of choice for plaque characterization in clinical practice. However, its significant image noise, coupled with the small size of the plaques and their complex appearance, makes it difficult for automated techniques to discriminate between the different plaque constituents. In this paper, we propose to address this challenging problem by exploiting the unique capabilities of the emerging deep learning framework. More specifically, and unlike existing works which require a priori definition of specific imaging features or thresholding values, we propose to build a convolutional neural network (CNN) that will automatically extract from the images the information that is optimal for the identification of the different plaque constituents. We used approximately 90 000 patches extracted from a database of images and corresponding expert plaque characterizations to train and to validate the proposed CNN. The results of cross-validation experiments show a correlation of about 0.90 with the clinical assessment for the estimation of lipid core, fibrous cap, and calcified tissue areas, indicating the potential of deep learning for the challenging task of automatic characterization of plaque composition in carotid ultrasound. |
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MILAB; no menciona |
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Admin @ si @ LGB2017 |
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2931 |
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Author |
Marc Bolaños; Mariella Dimiccoli; Petia Radeva |
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Title |
Towards Storytelling from Visual Lifelogging: An Overview |
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Journal Article |
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Year |
2017 |
Publication |
IEEE Transactions on Human-Machine Systems |
Abbreviated Journal |
THMS |
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47 |
Issue |
1 |
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77 - 90 |
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Visual lifelogging consists of acquiring images that capture the daily experiences of the user by wearing a camera over a long period of time. The pictures taken offer considerable potential for knowledge mining concerning how people live their lives, hence, they open up new opportunities for many potential applications in fields including healthcare, security, leisure and
the quantified self. However, automatically building a story from a huge collection of unstructured egocentric data presents major challenges. This paper provides a thorough review of advances made so far in egocentric data analysis, and in view of the current state of the art, indicates new lines of research to move us towards storytelling from visual lifelogging. |
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MILAB; 601.235 |
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Admin @ si @ BDR2017 |
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2712 |
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Mariella Dimiccoli; Marc Bolaños; Estefania Talavera; Maedeh Aghaei; Stavri G. Nikolov; Petia Radeva |
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Title |
SR-Clustering: Semantic Regularized Clustering for Egocentric Photo Streams Segmentation |
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Journal Article |
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Year |
2017 |
Publication |
Computer Vision and Image Understanding |
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CVIU |
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155 |
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55-69 |
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While wearable cameras are becoming increasingly popular, locating relevant information in large unstructured collections of egocentric images is still a tedious and time consuming processes. This paper addresses the problem of organizing egocentric photo streams acquired by a wearable camera into semantically meaningful segments. First, contextual and semantic information is extracted for each image by employing a Convolutional Neural Networks approach. Later, by integrating language processing, a vocabulary of concepts is defined in a semantic space. Finally, by exploiting the temporal coherence in photo streams, images which share contextual and semantic attributes are grouped together. The resulting temporal segmentation is particularly suited for further analysis, ranging from activity and event recognition to semantic indexing and summarization. Experiments over egocentric sets of nearly 17,000 images, show that the proposed approach outperforms state-of-the-art methods. |
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MILAB; 601.235 |
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Admin @ si @ DBT2017 |
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2714 |
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