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Author Victor M. Campello; Carlos Martin-Isla; Cristian Izquierdo; Andrea Guala; Jose F. Rodriguez Palomares; David Vilades; Martin L. Descalzo; Mahir Karakas; Ersin Cavus; Zahra Zahra Raisi-Estabragh; Steffen E. Petersen; Sergio Escalera; Santiago Segui; Karim Lekadir edit  doi
openurl 
  Title Minimising multi-centre radiomics variability through image normalisation: a pilot study Type Journal Article
  Year 2022 Publication Scientific Reports Abbreviated Journal ScR  
  Volume 12 Issue 1 Pages 12532  
  Keywords  
  Abstract Radiomics is an emerging technique for the quantification of imaging data that has recently shown great promise for deeper phenotyping of cardiovascular disease. Thus far, the technique has been mostly applied in single-centre studies. However, one of the main difficulties in multi-centre imaging studies is the inherent variability of image characteristics due to centre differences. In this paper, a comprehensive analysis of radiomics variability under several image- and feature-based normalisation techniques was conducted using a multi-centre cardiovascular magnetic resonance dataset. 218 subjects divided into healthy (n = 112) and hypertrophic cardiomyopathy (n = 106, HCM) groups from five different centres were considered. First and second order texture radiomic features were extracted from three regions of interest, namely the left and right ventricular cavities and the left ventricular myocardium. Two methods were used to assess features’ variability. First, feature distributions were compared across centres to obtain a distribution similarity index. Second, two classification tasks were proposed to assess: (1) the amount of centre-related information encoded in normalised features (centre identification) and (2) the generalisation ability for a classification model when trained on these features (healthy versus HCM classification). The results showed that the feature-based harmonisation technique ComBat is able to remove the variability introduced by centre information from radiomic features, at the expense of slightly degrading classification performance. Piecewise linear histogram matching normalisation gave features with greater generalisation ability for classification ( balanced accuracy in between 0.78 ± 0.08 and 0.79 ± 0.09). Models trained with features from images without normalisation showed the worst performance overall ( balanced accuracy in between 0.45 ± 0.28 and 0.60 ± 0.22). In conclusion, centre-related information removal did not imply good generalisation ability for classification.  
  Address 2022/07/22  
  Corporate Author Thesis  
  Publisher (down) Springer Nature Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN ISBN Medium  
  Area Expedition Conference  
  Notes HuPBA Approved no  
  Call Number Admin @ si @ CMI2022 Serial 3749  
Permanent link to this record
 
 
Author Mohammad ali Bagheri; Qigang Gao; Sergio Escalera edit  doi
openurl 
  Title Combining Local and Global Learners in the Pairwise Multiclass Classification Type Journal Article
  Year 2015 Publication Pattern Analysis and Applications Abbreviated Journal PAA  
  Volume 18 Issue 4 Pages 845-860  
  Keywords Multiclass classification; Pairwise approach; One-versus-one  
  Abstract Pairwise classification is a well-known class binarization technique that converts a multiclass problem into a number of two-class problems, one problem for each pair of classes. However, in the pairwise technique, nuisance votes of many irrelevant classifiers may result in a wrong class prediction. To overcome this problem, a simple, but efficient method is proposed and evaluated in this paper. The proposed method is based on excluding some classes and focusing on the most probable classes in the neighborhood space, named Local Crossing Off (LCO). This procedure is performed by employing a modified version of standard K-nearest neighbor and large margin nearest neighbor algorithms. The LCO method takes advantage of nearest neighbor classification algorithm because of its local learning behavior as well as the global behavior of powerful binary classifiers to discriminate between two classes. Combining these two properties in the proposed LCO technique will avoid the weaknesses of each method and will increase the efficiency of the whole classification system. On several benchmark datasets of varying size and difficulty, we found that the LCO approach leads to significant improvements using different base learners. The experimental results show that the proposed technique not only achieves better classification accuracy in comparison to other standard approaches, but also is computationally more efficient for tackling classification problems which have a relatively large number of target classes.  
  Address  
  Corporate Author Thesis  
  Publisher (down) Springer London Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 1433-7541 ISBN Medium  
  Area Expedition Conference  
  Notes HuPBA;MILAB Approved no  
  Call Number Admin @ si @ BGE2014 Serial 2441  
Permanent link to this record
 
 
Author Zhen Xu; Sergio Escalera; Adrien Pavao; Magali Richard; Wei-Wei Tu; Quanming Yao; Huan Zhao; Isabelle Guyon edit  doi
openurl 
  Title Codabench: Flexible, easy-to-use, and reproducible meta-benchmark platform Type Journal Article
  Year 2022 Publication Patterns Abbreviated Journal PATTERNS  
  Volume 3 Issue 7 Pages 100543  
  Keywords Machine learning; data science; benchmark platform; reproducibility; competitions  
  Abstract Obtaining a standardized benchmark of computational methods is a major issue in data-science communities. Dedicated frameworks enabling fair benchmarking in a unified environment are yet to be developed. Here, we introduce Codabench, a meta-benchmark platform that is open sourced and community driven for benchmarking algorithms or software agents versus datasets or tasks. A public instance of Codabench is open to everyone free of charge and allows benchmark organizers to fairly compare submissions under the same setting (software, hardware, data, algorithms), with custom protocols and data formats. Codabench has unique features facilitating easy organization of flexible and reproducible benchmarks, such as the possibility of reusing templates of benchmarks and supplying compute resources on demand. Codabench has been used internally and externally on various applications, receiving more than 130 users and 2,500 submissions. As illustrative use cases, we introduce four diverse benchmarks covering graph machine learning, cancer heterogeneity, clinical diagnosis, and reinforcement learning.  
  Address June 24, 2022  
  Corporate Author Thesis  
  Publisher (down) Science Direct Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN ISBN Medium  
  Area Expedition Conference  
  Notes HuPBA Approved no  
  Call Number Admin @ si @ XEP2022 Serial 3764  
Permanent link to this record
 
 
Author Penny Tarling; Mauricio Cantor; Albert Clapes; Sergio Escalera edit  doi
openurl 
  Title Deep learning with self-supervision and uncertainty regularization to count fish in underwater images Type Journal Article
  Year 2022 Publication PloS One Abbreviated Journal Plos  
  Volume 17 Issue 5 Pages e0267759  
  Keywords  
  Abstract Effective conservation actions require effective population monitoring. However, accurately counting animals in the wild to inform conservation decision-making is difficult. Monitoring populations through image sampling has made data collection cheaper, wide-reaching and less intrusive but created a need to process and analyse this data efficiently. Counting animals from such data is challenging, particularly when densely packed in noisy images. Attempting this manually is slow and expensive, while traditional computer vision methods are limited in their generalisability. Deep learning is the state-of-the-art method for many computer vision tasks, but it has yet to be properly explored to count animals. To this end, we employ deep learning, with a density-based regression approach, to count fish in low-resolution sonar images. We introduce a large dataset of sonar videos, deployed to record wild Lebranche mullet schools (Mugil liza), with a subset of 500 labelled images. We utilise abundant unlabelled data in a self-supervised task to improve the supervised counting task. For the first time in this context, by introducing uncertainty quantification, we improve model training and provide an accompanying measure of prediction uncertainty for more informed biological decision-making. Finally, we demonstrate the generalisability of our proposed counting framework through testing it on a recent benchmark dataset of high-resolution annotated underwater images from varying habitats (DeepFish). From experiments on both contrasting datasets, we demonstrate our network outperforms the few other deep learning models implemented for solving this task. By providing an open-source framework along with training data, our study puts forth an efficient deep learning template for crowd counting aquatic animals thereby contributing effective methods to assess natural populations from the ever-increasing visual data.  
  Address  
  Corporate Author Thesis  
  Publisher (down) Public Library of Science Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN ISBN Medium  
  Area Expedition Conference  
  Notes HuPBA Approved no  
  Call Number Admin @ si @ TCC2022 Serial 3743  
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Author Sergio Escalera; Xavier Baro; Jordi Vitria; Petia Radeva; Bogdan Raducanu edit   pdf
doi  openurl
  Title Social Network Extraction and Analysis Based on Multimodal Dyadic Interaction Type Journal Article
  Year 2012 Publication Sensors Abbreviated Journal SENS  
  Volume 12 Issue 2 Pages 1702-1719  
  Keywords  
  Abstract IF=1.77 (2010)
Social interactions are a very important component in peopleís lives. Social network analysis has become a common technique used to model and quantify the properties of social interactions. In this paper, we propose an integrated framework to explore the characteristics of a social network extracted from multimodal dyadic interactions. For our study, we used a set of videos belonging to New York Timesí Blogging Heads opinion blog.
The Social Network is represented as an oriented graph, whose directed links are determined by the Influence Model. The linksí weights are a measure of the ìinfluenceî a person has over the other. The states of the Influence Model encode automatically extracted audio/visual features from our videos using state-of-the art algorithms. Our results are reported in terms of accuracy of audio/visual data fusion for speaker segmentation and centrality measures used to characterize the extracted social network.		  
  Address  
  Corporate Author Thesis  
  Publisher (down) Molecular Diversity Preservation International Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN ISBN Medium  
  Area Expedition Conference  
  Notes MILAB; OR;HuPBA;MV Approved no  
  Call Number Admin @ si @ EBV2012 Serial 1885  
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