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Reuben Dorent; Aaron Kujawa; Marina Ivory; Spyridon Bakas; Nikola Rieke; Samuel Joutard; Ben Glocker; Jorge Cardoso; Marc Modat; Kayhan Batmanghelich; Arseniy Belkov; Maria Baldeon Calisto; Jae Won Choi; Benoit M. Dawant; Hexin Dong; Sergio Escalera; Yubo Fan; Lasse Hansen; Mattias P. Heinrich; Smriti Joshi; Victoriya Kashtanova; Hyeon Gyu Kim; Satoshi Kondo; Christian N. Kruse; Susana K. Lai-Yuen; Hao Li; Han Liu; Buntheng Ly; Ipek Oguz; Hyungseob Shin; Boris Shirokikh; Zixian Su; Guotai Wang; Jianghao Wu; Yanwu Xu; Kai Yao; Li Zhang; Sebastien Ourselin, |
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Title |
CrossMoDA 2021 challenge: Benchmark of Cross-Modality Domain Adaptation techniques for Vestibular Schwannoma and Cochlea Segmentation |
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Year |
2023 |
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Medical Image Analysis |
Abbreviated Journal |
MIA |
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83 |
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102628 |
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Domain Adaptation; Segmen tation; Vestibular Schwnannoma |
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Domain Adaptation (DA) has recently raised strong interests in the medical imaging community. While a large variety of DA techniques has been proposed for image segmentation, most of these techniques have been validated either on private datasets or on small publicly available datasets. Moreover, these datasets mostly addressed single-class problems. To tackle these limitations, the Cross-Modality Domain Adaptation (crossMoDA) challenge was organised in conjunction with the 24th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2021). CrossMoDA is the first large and multi-class benchmark for unsupervised cross-modality DA. The challenge's goal is to segment two key brain structures involved in the follow-up and treatment planning of vestibular schwannoma (VS): the VS and the cochleas. Currently, the diagnosis and surveillance in patients with VS are performed using contrast-enhanced T1 (ceT1) MRI. However, there is growing interest in using non-contrast sequences such as high-resolution T2 (hrT2) MRI. Therefore, we created an unsupervised cross-modality segmentation benchmark. The training set provides annotated ceT1 (N=105) and unpaired non-annotated hrT2 (N=105). The aim was to automatically perform unilateral VS and bilateral cochlea segmentation on hrT2 as provided in the testing set (N=137). A total of 16 teams submitted their algorithm for the evaluation phase. The level of performance reached by the top-performing teams is strikingly high (best median Dice – VS:88.4%; Cochleas:85.7%) and close to full supervision (median Dice – VS:92.5%; Cochleas:87.7%). All top-performing methods made use of an image-to-image translation approach to transform the source-domain images into pseudo-target-domain images. A segmentation network was then trained using these generated images and the manual annotations provided for the source image. |
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HUPBA |
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Admin @ si @ DKI2023 |
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3706 |
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Author |
Francesco Ciompi; Oriol Pujol; Petia Radeva |
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ECOC-DRF: Discriminative random fields based on error correcting output codes |
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Journal Article |
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Year |
2014 |
Publication |
Pattern Recognition |
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PR |
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47 |
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6 |
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2193-2204 |
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Discriminative random fields; Error-correcting output codes; Multi-class classification; Graphical models |
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We present ECOC-DRF, a framework where potential functions for Discriminative Random Fields are formulated as an ensemble of classifiers. We introduce the label trick, a technique to express transitions in the pairwise potential as meta-classes. This allows to independently learn any possible transition between labels without assuming any pre-defined model. The Error Correcting Output Codes matrix is used as ensemble framework for the combination of margin classifiers. We apply ECOC-DRF to a large set of classification problems, covering synthetic, natural and medical images for binary and multi-class cases, outperforming state-of-the art in almost all the experiments. |
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LAMP; HuPBA; MILAB; 605.203; 600.046; 601.043; 600.079 |
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Admin @ si @ CPR2014b |
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2470 |
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Oriol Pujol; Debora Gil; Petia Radeva |
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Fundamentals of Stop and Go active models |
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2005 |
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Image and Vision Computing |
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23 |
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8 |
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681-691 |
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Deformable models; Geodesic snakes; Region-based segmentation |
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An efficient snake formulation should conform to the idea of picking the smoothest curve among all the shapes approximating an object of interest. In current geodesic snakes, the regularizing curvature also affects the convergence stage, hindering the latter at concave regions. In the present work, we make use of characteristic functions to define a novel geodesic formulation that decouples regularity and convergence. This term decoupling endows the snake with higher adaptability to non-convex shapes. Convergence is ensured by splitting the definition of the external force into an attractive vector field and a repulsive one. In our paper, we propose to use likelihood maps as approximation of characteristic functions of object appearance. The better efficiency and accuracy of our decoupled scheme are illustrated in the particular case of feature space-based segmentation. |
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Butterworth-Heinemann |
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Newton, MA, USA |
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0262-8856 |
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IAM;MILAB;HuPBA |
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IAM @ iam @ PGR2005 |
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1629 |
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Author |
Meysam Madadi; Hugo Bertiche; Sergio Escalera |
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SMPLR: Deep learning based SMPL reverse for 3D human pose and shape recovery |
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2020 |
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Pattern Recognition |
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PR |
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106 |
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107472 |
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Deep learning; 3D Human pose; Body shape; SMPL; Denoising autoencoder; Volumetric stack hourglass |
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In this paper we propose to embed SMPL within a deep-based model to accurately estimate 3D pose and shape from a still RGB image. We use CNN-based 3D joint predictions as an intermediate representation to regress SMPL pose and shape parameters. Later, 3D joints are reconstructed again in the SMPL output. This module can be seen as an autoencoder where the encoder is a deep neural network and the decoder is SMPL model. We refer to this as SMPL reverse (SMPLR). By implementing SMPLR as an encoder-decoder we avoid the need of complex constraints on pose and shape. Furthermore, given that in-the-wild datasets usually lack accurate 3D annotations, it is desirable to lift 2D joints to 3D without pairing 3D annotations with RGB images. Therefore, we also propose a denoising autoencoder (DAE) module between CNN and SMPLR, able to lift 2D joints to 3D and partially recover from structured error. We evaluate our method on SURREAL and Human3.6M datasets, showing improvement over SMPL-based state-of-the-art alternatives by about 4 and 12 mm, respectively. |
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HuPBA; no proj |
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Admin @ si @ MBE2020 |
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3439 |
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Author |
Antonio Hernandez; Sergio Escalera; Stan Sclaroff |
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Title |
Poselet-basedContextual Rescoring for Human Pose Estimation via Pictorial Structures |
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Journal Article |
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2016 |
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International Journal of Computer Vision |
Abbreviated Journal |
IJCV |
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118 |
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1 |
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49–64 |
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Contextual rescoring; Poselets; Human pose estimation |
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In this paper we propose a contextual rescoring method for predicting the position of body parts in a human pose estimation framework. A set of poselets is incorporated in the model, and their detections are used to extract spatial and score-related features relative to other body part hypotheses. A method is proposed for the automatic discovery of a compact subset of poselets that covers the different poses in a set of validation images while maximizing precision. A rescoring mechanism is defined as a set-based boosting classifier that computes a new score for each body joint detection, given its relationship to detections of other body joints and mid-level parts in the image. This new score is incorporated in the pictorial structure model as an additional unary potential, following the recent work of Pishchulin et al. Experiments on two benchmarks show comparable results to Pishchulin et al. while reducing the size of the mid-level representation by an order of magnitude, reducing the execution time by 68 % accordingly. |
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Springer US |
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0920-5691 |
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HuPBA;MILAB; |
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Admin @ si @ HES2016 |
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2719 |
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