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Victor M. Campello; Carlos Martin-Isla; Cristian Izquierdo; Andrea Guala; Jose F. Rodriguez Palomares; David Vilades; Martin L. Descalzo; Mahir Karakas; Ersin Cavus; Zahra Zahra Raisi-Estabragh; Steffen E. Petersen; Sergio Escalera; Santiago Segui; Karim Lekadir |
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Title |
Minimising multi-centre radiomics variability through image normalisation: a pilot study |
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Journal Article |
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Year |
2022 |
Publication |
Scientific Reports |
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ScR |
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12 |
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1 |
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12532 |
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Abstract |
Radiomics is an emerging technique for the quantification of imaging data that has recently shown great promise for deeper phenotyping of cardiovascular disease. Thus far, the technique has been mostly applied in single-centre studies. However, one of the main difficulties in multi-centre imaging studies is the inherent variability of image characteristics due to centre differences. In this paper, a comprehensive analysis of radiomics variability under several image- and feature-based normalisation techniques was conducted using a multi-centre cardiovascular magnetic resonance dataset. 218 subjects divided into healthy (n = 112) and hypertrophic cardiomyopathy (n = 106, HCM) groups from five different centres were considered. First and second order texture radiomic features were extracted from three regions of interest, namely the left and right ventricular cavities and the left ventricular myocardium. Two methods were used to assess features’ variability. First, feature distributions were compared across centres to obtain a distribution similarity index. Second, two classification tasks were proposed to assess: (1) the amount of centre-related information encoded in normalised features (centre identification) and (2) the generalisation ability for a classification model when trained on these features (healthy versus HCM classification). The results showed that the feature-based harmonisation technique ComBat is able to remove the variability introduced by centre information from radiomic features, at the expense of slightly degrading classification performance. Piecewise linear histogram matching normalisation gave features with greater generalisation ability for classification ( balanced accuracy in between 0.78 ± 0.08 and 0.79 ± 0.09). Models trained with features from images without normalisation showed the worst performance overall ( balanced accuracy in between 0.45 ± 0.28 and 0.60 ± 0.22). In conclusion, centre-related information removal did not imply good generalisation ability for classification. |
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2022/07/22 |
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Springer Nature |
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HuPBA;MILAB |
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no |
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Admin @ si @ CMI2022 |
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3749 |
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Author |
Joakim Bruslund Haurum; Meysam Madadi; Sergio Escalera; Thomas B. Moeslund |
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Title |
Multi-scale hybrid vision transformer and Sinkhorn tokenizer for sewer defect classification |
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Journal Article |
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Year |
2022 |
Publication |
Automation in Construction |
Abbreviated Journal |
AC |
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144 |
Issue |
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Pages |
104614 |
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Keywords |
Sewer Defect Classification; Vision Transformers; Sinkhorn-Knopp; Convolutional Neural Networks; Closed-Circuit Television; Sewer Inspection |
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Abstract |
A crucial part of image classification consists of capturing non-local spatial semantics of image content. This paper describes the multi-scale hybrid vision transformer (MSHViT), an extension of the classical convolutional neural network (CNN) backbone, for multi-label sewer defect classification. To better model spatial semantics in the images, features are aggregated at different scales non-locally through the use of a lightweight vision transformer, and a smaller set of tokens was produced through a novel Sinkhorn clustering-based tokenizer using distinct cluster centers. The proposed MSHViT and Sinkhorn tokenizer were evaluated on the Sewer-ML multi-label sewer defect classification dataset, showing consistent performance improvements of up to 2.53 percentage points. |
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Dec 2022 |
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HuPBA;MILAB |
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Admin @ si @ BME2022c |
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3780 |
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Author |
Reza Azad; Maryam Asadi-Aghbolaghi; Shohreh Kasaei; Sergio Escalera |
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Title |
Dynamic 3D Hand Gesture Recognition by Learning Weighted Depth Motion Maps |
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Journal Article |
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Year |
2019 |
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IEEE Transactions on Circuits and Systems for Video Technology |
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TCSVT |
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29 |
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6 |
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1729-1740 |
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Hand gesture recognition; Multilevel temporal sampling; Weighted depth motion map; Spatio-temporal description; VLAD encoding |
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Hand gesture recognition from sequences of depth maps is a challenging computer vision task because of the low inter-class and high intra-class variability, different execution rates of each gesture, and the high articulated nature of human hand. In this paper, a multilevel temporal sampling (MTS) method is first proposed that is based on the motion energy of key-frames of depth sequences. As a result, long, middle, and short sequences are generated that contain the relevant gesture information. The MTS results in increasing the intra-class similarity while raising the inter-class dissimilarities. The weighted depth motion map (WDMM) is then proposed to extract the spatio-temporal information from generated summarized sequences by an accumulated weighted absolute difference of consecutive frames. The histogram of gradient (HOG) and local binary pattern (LBP) are exploited to extract features from WDMM. The obtained results define the current state-of-the-art on three public benchmark datasets of: MSR Gesture 3D, SKIG, and MSR Action 3D, for 3D hand gesture recognition. We also achieve competitive results on NTU action dataset. |
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June 2019, |
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HUPBA; no proj;MILAB |
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no |
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Admin @ si @ AAK2018 |
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3213 |
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Author |
Zhen Xu; Sergio Escalera; Adrien Pavao; Magali Richard; Wei-Wei Tu; Quanming Yao; Huan Zhao; Isabelle Guyon |
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Title |
Codabench: Flexible, easy-to-use, and reproducible meta-benchmark platform |
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Journal Article |
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Year |
2022 |
Publication |
Patterns |
Abbreviated Journal |
PATTERNS |
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Volume |
3 |
Issue |
7 |
Pages |
100543 |
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Keywords |
Machine learning; data science; benchmark platform; reproducibility; competitions |
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Obtaining a standardized benchmark of computational methods is a major issue in data-science communities. Dedicated frameworks enabling fair benchmarking in a unified environment are yet to be developed. Here, we introduce Codabench, a meta-benchmark platform that is open sourced and community driven for benchmarking algorithms or software agents versus datasets or tasks. A public instance of Codabench is open to everyone free of charge and allows benchmark organizers to fairly compare submissions under the same setting (software, hardware, data, algorithms), with custom protocols and data formats. Codabench has unique features facilitating easy organization of flexible and reproducible benchmarks, such as the possibility of reusing templates of benchmarks and supplying compute resources on demand. Codabench has been used internally and externally on various applications, receiving more than 130 users and 2,500 submissions. As illustrative use cases, we introduce four diverse benchmarks covering graph machine learning, cancer heterogeneity, clinical diagnosis, and reinforcement learning. |
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June 24, 2022 |
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Science Direct |
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HuPBA;MILAB |
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Admin @ si @ XEP2022 |
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3764 |
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Author |
M. Gomez; J. Mauri; E. Fernandez-Nofrerias; Oriol Rodriguez-Leor; Carme Julia; Oriol Pujol; Petia Radeva |
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Title |
Diferenciacion de las estructuras del vaso coronario mediante el procesamiento de imagenes y el analisis de las diferentes texturas a partir de la ecografia intracoronaria |
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2002 |
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XXXVIII Congreso Nacional de la Sociedad Española de Cardiologia |
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Madrid |
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MILAB;HuPBA |
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BCNPCL @ bcnpcl @ GMF2002f |
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433 |
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