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Author (up) A. M. Here; B. C. Lopez; Debora Gil; J. J. Camarero; Jordi Martinez-Vilalta
Title A new software to analyse wood anatomical features in conifer species Type Conference Article
Year 2013 Publication International Symposium on Wood Structure in Plant Biology and Ecology Abbreviated Journal
Volume Issue Pages
Keywords
Abstract International Symposium on Wood Structure in Plant Biology and Ecology
Address Naples; Italy; March 2013
Corporate Author Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN Medium
Area Expedition Conference WSE
Notes IAM Approved no
Call Number Admin @ si @ HLG2013 Serial 2303
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Author (up) Albert Andaluz; Francesc Carreras; Cristina Santa Marta;Debora Gil
Title Myocardial torsion estimation with Tagged-MRI in the OsiriX platform Type Conference Article
Year 2012 Publication ISBI Workshop on Open Source Medical Image Analysis software Abbreviated Journal
Volume Issue Pages
Keywords
Abstract Myocardial torsion (MT) plays a crucial role in the assessment of the functionality of the
left ventricle. For this purpose, the IAM group at the CVC has developed the Harmonic Phase Flow (HPF) plugin for the Osirix DICOM platform . We have validated its funcionalty on sequences acquired using different protocols and including healthy and pathological cases. Results show similar torsion trends for SPAMM acquisitions, with pathological cases introducing expected deviations from the ground truth. Finally, we provide the plugin free of charge at http://iam.cvc.uab.es
Address Barcelona, Spain
Corporate Author Thesis
Publisher IEEE Place of Publication Editor Wiro Niessen (Erasmus MC) and Marc Modat (UCL)
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN Medium
Area Expedition Conference ISBI
Notes IAM Approved no
Call Number IAM @ iam @ ACS2012 Serial 1900
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Author (up) Albert Andaluz; Francesc Carreras; Debora Gil; Jaume Garcia
Title Una aplicació amigable pel càlcul de indicadors clínics del ventricle esquerre Type Miscellaneous
Year 2010 Publication Forum Biocat 2010 Abbreviated Journal
Volume Issue Pages
Keywords
Abstract
Address Lonja de Mar,Barcelona (Spain)
Corporate Author CVC Thesis
Publisher Biocat Place of Publication Barcelona Editor
Language Catalan Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN Medium
Area Expedition Conference
Notes IAM Approved no
Call Number IAM @ iam @ ACG2010 Serial 1483
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Author (up) Alberto Hidalgo; Ferran Poveda; Enric Marti;Debora Gil;Albert Andaluz; Francesc Carreras; Manuel Ballester
Title Evidence of continuous helical structure of the cardiac ventricular anatomy assessed by diffusion tensor imaging magnetic resonance multiresolution tractography Type Journal Article
Year 2012 Publication European Radiology Abbreviated Journal ECR
Volume 3 Issue 1 Pages 361-362
Keywords
Abstract Deep understanding of myocardial structure linking morphology and func- tion of the heart would unravel crucial knowledge for medical and surgical clinical procedures and studies. Diffusion tensor MRI provides a discrete measurement of the 3D arrangement of myocardial fibres by the observation of local anisotropic
diffusion of water molecules in biological tissues. In this work, we present a multi- scale visualisation technique based on DT-MRI streamlining capable of uncovering additional properties of the architectural organisation of the heart. Methods and Materials: We selected the John Hopkins University (JHU) Canine Heart Dataset, where the long axis cardiac plane is aligned with the scanner’s Z- axis. Their equipment included a 4-element passed array coil emitting a 1.5 T. For DTI acquisition, a 3D-FSE sequence is apply. We used 200 seeds for full-scale tractography, while we applied a MIP mapping technique for simplified tractographic reconstruction. In this case, we reduced each DTI 3D volume dimensions by order- two magnitude before streamlining.
Our simplified tractographic reconstruction method keeps the main geometric features of fibres, allowing for an easier identification of their global morphological disposition, including the ventricular basal ring. Moreover, we noticed a clearly visible helical disposition of the myocardial fibres, in line with the helical myocardial band ventricular structure described by Torrent-Guasp. Finally, our simplified visualisation with single tracts identifies the main segments of the helical ventricular architecture.
DT-MRI makes possible the identification of a continuous helical architecture of the myocardial fibres, which validates Torrent-Guasp’s helical myocardial band ventricular anatomical model.
Address Viena, Austria
Corporate Author Thesis
Publisher Springer Link Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 1869-4101 ISBN Medium
Area Expedition Conference
Notes IAM Approved no
Call Number IAM @ iam @ HPM2012 Serial 1858
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Author (up) Antoni Gurgui; Debora Gil; Enric Marti
Title Laplacian Unitary Domain for Texture Morphing Type Conference Article
Year 2015 Publication Proceedings of the 10th International Conference on Computer Vision Theory and Applications VISIGRAPP2015 Abbreviated Journal
Volume 1 Issue Pages 693-699
Keywords Facial; metamorphosis;LaplacianMorphing
Abstract Deformation of expressive textures is the gateway to realistic computer synthesis of expressions. By their good mathematical properties and flexible formulation on irregular meshes, most texture mappings rely on solutions to the Laplacian in the cartesian space. In the context of facial expression morphing, this approximation can be seen from the opposite point of view by neglecting the metric. In this paper, we use the properties of the Laplacian in manifolds to present a novel approach to warping expressive facial images in order to generate a morphing between them.
Address Munich; Germany; February 2015
Corporate Author Thesis
Publisher SciTePress Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN 978-989-758-089-5 Medium
Area Expedition Conference VISAPP
Notes IAM; 600.075 Approved no
Call Number Admin @ si @ GGM2015 Serial 2614
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Author (up) Antoni Gurgui; Debora Gil; Enric Marti; Vicente Grau
Title Left-Ventricle Basal Region Constrained Parametric Mapping to Unitary Domain Type Conference Article
Year 2016 Publication 7th International Workshop on Statistical Atlases & Computational Modelling of the Heart Abbreviated Journal
Volume 10124 Issue Pages 163-171
Keywords Laplacian; Constrained maps; Parameterization; Basal ring
Abstract Due to its complex geometry, the basal ring is often omitted when putting different heart geometries into correspondence. In this paper, we present the first results on a new mapping of the left ventricle basal rings onto a normalized coordinate system using a fold-over free approach to the solution to the Laplacian. To guarantee correspondences between different basal rings, we imposed some internal constrained positions at anatomical landmarks in the normalized coordinate system. To prevent internal fold-overs, constraints are handled by cutting the volume into regions defined by anatomical features and mapping each piece of the volume separately. Initial results presented in this paper indicate that our method is able to handle internal constrains without introducing fold-overs and thus guarantees one-to-one mappings between different basal ring geometries.
Address Athens; October 2016
Corporate Author Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title LNCS
Series Volume Series Issue Edition
ISSN ISBN Medium
Area Expedition Conference STACOM
Notes IAM; Approved no
Call Number Admin @ si @ GGM2016 Serial 2884
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Author (up) Antoni Rosell; Sonia Baeza; S. Garcia-Reina; JL. Mate; Ignasi Guasch; I. Nogueira; I. Garcia-Olive; Guillermo Torres; Carles Sanchez; Debora Gil
Title Radiomics to increase the effectiveness of lung cancer screening programs. Radiolung preliminary results. Type Journal Article
Year 2022 Publication European Respiratory Journal Abbreviated Journal ERJ
Volume 60 Issue 66 Pages
Keywords
Abstract
Address
Corporate Author Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN Medium
Area Expedition Conference
Notes IAM Approved no
Call Number Admin @ si @ RBG2022c Serial 3835
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Author (up) Antoni Rosell; Sonia Baeza; S. Garcia-Reina; JL. Mate; Ignasi Guasch; I. Nogueira; I. Garcia-Olive; Guillermo Torres; Carles Sanchez; Debora Gil
Title EP01.05-001 Radiomics to Increase the Effectiveness of Lung Cancer Screening Programs. Radiolung Preliminary Results Type Journal Article
Year 2022 Publication Journal of Thoracic Oncology Abbreviated Journal JTO
Volume 17 Issue 9 Pages S182
Keywords
Abstract
Address
Corporate Author Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN Medium
Area Expedition Conference
Notes IAM Approved no
Call Number Admin @ si @ RBG2022b Serial 3834
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Author (up) Antonio Esteban Lansaque; Carles Sanchez; Agnes Borras; Marta Diez-Ferrer; Antoni Rosell; Debora Gil
Title Stable Anatomical Structure Tracking for video-bronchoscopy Navigation Type Conference Article
Year 2016 Publication 19th International Conference on Medical Image Computing and Computer Assisted Intervention Workshops Abbreviated Journal
Volume Issue Pages
Keywords Lung cancer diagnosis; video-bronchoscopy; airway lumen detection; region tracking
Abstract Bronchoscopy allows to examine the patient airways for detection of lesions and sampling of tissues without surgery. A main drawback in lung cancer diagnosis is the diculty to check whether the exploration is following the correct path to the nodule that has to be biopsied. The most extended guidance uses uoroscopy which implies repeated radiation of clinical sta and patients. Alternatives such as virtual bronchoscopy or electromagnetic navigation are very expensive and not completely robust to blood, mocus or deformations as to be extensively used. We propose a method that extracts and tracks stable lumen regions at di erent levels of the bronchial tree. The tracked regions are stored in a tree that encodes the anatomical structure of the scene which can be useful to retrieve the path to the lesion that the clinician should follow to do the biopsy. We present a multi-expert validation of our anatomical landmark extraction in 3 intra-operative ultrathin explorations.
Address Athens; Greece; October 2016
Corporate Author Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN Medium
Area Expedition Conference MICCAIW
Notes IAM; 600.075 Approved no
Call Number Admin @ si @ LSB2016b Serial 2857
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Author (up) Antonio Esteban Lansaque; Carles Sanchez; Agnes Borras; Marta Diez-Ferrer; Antoni Rosell; Debora Gil
Title Stable Airway Center Tracking for Bronchoscopic Navigation Type Conference Article
Year 2016 Publication 28th Conference of the international Society for Medical Innovation and Technology Abbreviated Journal
Volume Issue Pages
Keywords
Abstract Bronchoscopists use X‐ray fluoroscopy to guide bronchoscopes to the lesion to be biopsied without any kind of incisions. Reducing exposure to X‐ray is important for both patients and doctors but alternatives like electromagnetic navigation require specific equipment and increase the cost of the clinical procedure. We propose a guiding system based on the extraction of airway centers from intra‐operative videos. Such anatomical landmarks could be
matched to the airway centerline extracted from a pre‐planned CT to indicate the best path to the lesion. We present an extraction of lumen centers
from intra‐operative videos based on tracking of maximal stable regions of energy maps.
Address Delft; Rotterdam; Leiden; The Netherlands; October 2016
Corporate Author Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN Medium
Area Expedition Conference SMIT
Notes IAM; Approved no
Call Number Admin @ si @ LSB2016a Serial 2856
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Author (up) Aura Hernandez-Sabate; David Rotger; Debora Gil
Title Image-based ECG sampling of IVUS sequences Type Conference Article
Year 2008 Publication Proc. IEEE Ultrasonics Symp. IUS 2008 Abbreviated Journal
Volume Issue Pages 1330-1333
Keywords Longitudinal Motion; Image-based ECG-gating; Fourier analysis
Abstract Longitudinal motion artifacts in IntraVascular UltraSound (IVUS) sequences hinders a properly 3D reconstruction and vessel measurements. Most of current techniques base on the ECG signal to obtain a gated pullback without the longitudinal artifact by using a specific hardware or the ECG signal itself. The potential of IVUS images processing for phase retrieval still remains little explored. In this paper, we present a fast forward image-based algorithm to approach ECG sampling. Inspired on the fact that maximum and minimum lumen areas are related to end-systole and end-diastole, our cardiac phase retrieval is based on the analysis of tissue density of mass along the sequence. The comparison between automatic and manual phase retrieval (0.07 ± 0.07 mm. of error) encourages a deep validation contrasting with ECG signals.
Address Beijing (China)
Corporate Author Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN Medium
Area Expedition Conference
Notes IAM;MILAB Approved no
Call Number IAM @ iam @ HRG2008 Serial 1553
Permanent link to this record
 
 
Author (up) Aura Hernandez-Sabate; Debora Gil
Title The Benefits of IVUS Dynamics for Retrieving Stable Models of Arteries Type Book Chapter
Year 2012 Publication Intravascular Ultrasound Abbreviated Journal
Volume Issue Pages 185-206
Keywords
Abstract
Address
Corporate Author Thesis
Publisher Intech Place of Publication Editor Yasuhiro Honda
Language English Summary Language english Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN 978-953-307-900-4 Medium
Area Expedition Conference
Notes IAM; ADAS Approved no
Call Number IAM @ iam @ HeG2012 Serial 1684
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Author (up) Aura Hernandez-Sabate; Debora Gil; Albert Teis
Title How Do Conservation Laws Define a Motion Suppression Score in In-Vivo Ivus Sequences? Type Conference Article
Year 2007 Publication Proc. IEEE Ultrasonics Symp Abbreviated Journal
Volume Issue Pages 2231-2234
Keywords validation standards; IVUS motion compensation; conservation laws.
Abstract Evaluation of arterial tissue biomechanics for diagnosis and treatment of cardiovascular diseases is an active research field in the biomedical imaging processing area. IntraVascular UltraSound (IVUS) is a unique tool for such assessment since it reflects tissue morphology and deformation. A proper quantification and visualization of both properties is hindered by vessel structures misalignments introduced by cardiac dynamics. This has encouraged development of IVUS motion compensation techniques. However, there is a lack of an objective evaluation of motion reduction ensuring a reliable clinical application This work reports a novel score, the Conservation of Density Rate (CDR), for validation of motion compensation in in-vivo pullbacks. Synthetic experiments validate the proposed score as measure of motion parameters accuracy; while results in in vivo pullbacks show its reliability in clinical cases.
Address
Corporate Author Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN Medium
Area Expedition Conference
Notes IAM Approved no
Call Number IAM @ iam @ HTG2007 Serial 1550
Permanent link to this record
 
 
Author (up) Aura Hernandez-Sabate; Debora Gil; David Roche; Monica M. S. Matsumoto; Sergio S. Furuie
Title Inferring the Performance of Medical Imaging Algorithms Type Conference Article
Year 2011 Publication 14th International Conference on Computer Analysis of Images and Patterns Abbreviated Journal
Volume 6854 Issue Pages 520-528
Keywords Validation, Statistical Inference, Medical Imaging Algorithms.
Abstract Evaluation of the performance and limitations of medical imaging algorithms is essential to estimate their impact in social, economic or clinical aspects. However, validation of medical imaging techniques is a challenging task due to the variety of imaging and clinical problems involved, as well as, the difficulties for systematically extracting a reliable solely ground truth. Although specific validation protocols are reported in any medical imaging paper, there are still two major concerns: definition of standardized methodologies transversal to all problems and generalization of conclusions to the whole clinical data set.
We claim that both issues would be fully solved if we had a statistical model relating ground truth and the output of computational imaging techniques. Such a statistical model could conclude to what extent the algorithm behaves like the ground truth from the analysis of a sampling of the validation data set. We present a statistical inference framework reporting the agreement and describing the relationship of two quantities. We show its transversality by applying it to validation of two different tasks: contour segmentation and landmark correspondence.
Address Sevilla
Corporate Author Thesis
Publisher Springer-Verlag Berlin Heidelberg Place of Publication Berlin Editor Pedro Real; Daniel Diaz-Pernil; Helena Molina-Abril; Ainhoa Berciano; Walter Kropatsch
Language Summary Language Original Title
Series Editor Series Title L Abbreviated Series Title LNCS
Series Volume Series Issue Edition
ISSN ISBN Medium
Area Expedition Conference CAIP
Notes IAM; ADAS Approved no
Call Number IAM @ iam @ HGR2011 Serial 1676
Permanent link to this record
 
 
Author (up) Aura Hernandez-Sabate; Debora Gil; Jaume Garcia; Enric Marti
Title Image-based Cardiac Phase Retrieval in Intravascular Ultrasound Sequences Type Journal Article
Year 2011 Publication IEEE Transactions on Ultrasonics, Ferroelectrics and Frequency Control Abbreviated Journal T-UFFC
Volume 58 Issue 1 Pages 60-72
Keywords 3-D exploring; ECG; band-pass filter; cardiac motion; cardiac phase retrieval; coronary arteries; electrocardiogram signal; image intensity local mean evolution; image-based cardiac phase retrieval; in vivo pullbacks acquisition; intravascular ultrasound sequences; longitudinal motion; signal extrema; time 36 ms; band-pass filters; biomedical ultrasonics; cardiovascular system; electrocardiography; image motion analysis; image retrieval; image sequences; medical image processing; ultrasonic imaging
Abstract Longitudinal motion during in vivo pullbacks acquisition of intravascular ultrasound (IVUS) sequences is a major artifact for 3-D exploring of coronary arteries. Most current techniques are based on the electrocardiogram (ECG) signal to obtain a gated pullback without longitudinal motion by using specific hardware or the ECG signal itself. We present an image-based approach for cardiac phase retrieval from coronary IVUS sequences without an ECG signal. A signal reflecting cardiac motion is computed by exploring the image intensity local mean evolution. The signal is filtered by a band-pass filter centered at the main cardiac frequency. Phase is retrieved by computing signal extrema. The average frame processing time using our setup is 36 ms. Comparison to manually sampled sequences encourages a deeper study comparing them to ECG signals.
Address
Corporate Author Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 0885-3010 ISBN Medium
Area Expedition Conference
Notes IAM;ADAS Approved no
Call Number IAM @ iam @ HGG2011 Serial 1546
Permanent link to this record