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Francesc Tous, Agnes Borras, Robert Benavente, Ramon Baldrich, Maria Vanrell, & Josep Llados. (2002). "Textual Descriptors for browsing people by visual appearence. " In 5è. Congrés Català d’Intel·ligència Artificial CCIA.
Abstract: This paper presents a first approach to build colour and structural descriptors for information retrieval on a people database. Queries are formulated in terms of their appearance that allows to seek people wearing specific clothes of a given colour name or texture. Descriptors are automatically computed by following three essential steps. A colour naming labelling from pixel properties. A region seg- mentation step based on colour properties of pixels combined with edge information. And a high level step that models the region arrangements in order to build clothes structure. Results are tested on large set of images from real scenes taken at the entrance desk of a building.
Keywords: Image retrieval, textual descriptors, colour naming, colour normalization, graph matching.
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Agnes Borras. (2002)." High-Level Clothes Description Based on Colour-Texture Features." .
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Agnes Borras, Francesc Tous, Josep Llados, & Maria Vanrell. (2003). "High-Level Clothes Description Based on Colour-Texture and Structural Features " In 1rst. Iberian Conference on Pattern Recognition and Image Analysis IbPRIA 2003.
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Agnes Borras. (2009). "Contributions to the Content-Based Image Retrieval Using Pictorial Queries " (Josep Llados, Ed.). Ph.D. thesis, Ediciones Graficas Rey, Bellaterra.
Abstract: The broad access to digital cameras, personal computers and Internet, has lead to the generation of large volumes of data in digital form. If we want an effective usage of this huge amount of data, we need automatic tools to allow the retrieval of relevant information. Image data is a particular type of information that requires specific techniques of description and indexing. The computer vision field that studies these kind of techniques is called Content-Based Image Retrieval (CBIR). Instead of using text-based descriptions, a system of CBIR deals on properties that are inherent in the images themselves. Hence, the feature-based description provides a universal via of image expression in contrast with the more than 6000 languages spoken in the world.
Nowadays, the CBIR is a dynamic focus of research that has derived in important applications for many professional groups. The potential fields of application can be such diverse as: the medical domain, the crime prevention, the protection of the intel- lectual property, the journalism, the graphic design, the web search, the preservation of cultural heritage, etc.
The definition on the role of the user is a key point in the development of a CBIR application. The user is in charge to formulate the queries from which the images are retrieved. We have centered our attention on the image retrieval techniques that use queries based on pictorial information. We have identified a taxonomy composed by four main query paradigms: query-by-selection, query-by-iconic-composition, query- by-sketch and query-by-paint. Each one of these paradigms allows a different degree of user expressivity. From a simple image selection, to a complete painting of the query, the user takes control of the input in the CBIR system.
Along the chapters of this thesis we have analyzed the influence that each query paradigm imposes in the internal operations of a CBIR system. Moreover, we have proposed a set of contributions that we have exemplified in the context of a final application.
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Debora Gil, Agnes Borras, Manuel Ballester, Francesc Carreras, Ruth Aris, Manuel Vazquez, et al. (2011). "MIOCARDIA: Integrating cardiac function and muscular architecture for a better diagnosis " In Association for Computing Machinery (Ed.), 14th International Symposium on Applied Sciences in Biomedical and Communication Technologies. Barcelona, Spain.
Abstract: Deep understanding of myocardial structure of the heart would unravel crucial knowledge for clinical and medical procedures. The MIOCARDIA project is a multidisciplinary project in cooperation with l'Hospital de la Santa Creu i de Sant Pau, Clinica la Creu Blanca and Barcelona Supercomputing Center. The ultimate goal of this project is defining a computational model of the myocardium. The model takes into account the deep interrelation between the anatomy and the mechanics of the heart. The paper explains the workflow of the MIOCARDIA project. It also introduces a multiresolution reconstruction technique based on DT-MRI streamlining for simplified global myocardial model generation. Our reconstructions can restore the most complex myocardial structures and provides evidences of a global helical organization.
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Antonio Esteban Lansaque, Carles Sanchez, Agnes Borras, Marta Diez-Ferrer, Antoni Rosell, & Debora Gil. (2016). "Stable Airway Center Tracking for Bronchoscopic Navigation " In 28th Conference of the international Society for Medical Innovation and Technology.
Abstract: Bronchoscopists use X‐ray fluoroscopy to guide bronchoscopes to the lesion to be biopsied without any kind of incisions. Reducing exposure to X‐ray is important for both patients and doctors but alternatives like electromagnetic navigation require specific equipment and increase the cost of the clinical procedure. We propose a guiding system based on the extraction of airway centers from intra‐operative videos. Such anatomical landmarks could be
matched to the airway centerline extracted from a pre‐planned CT to indicate the best path to the lesion. We present an extraction of lumen centers
from intra‐operative videos based on tracking of maximal stable regions of energy maps.
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Antonio Esteban Lansaque, Carles Sanchez, Agnes Borras, Marta Diez-Ferrer, Antoni Rosell, & Debora Gil. (2016). "Stable Anatomical Structure Tracking for video-bronchoscopy Navigation " In 19th International Conference on Medical Image Computing and Computer Assisted Intervention Workshops.
Abstract: Bronchoscopy allows to examine the patient airways for detection of lesions and sampling of tissues without surgery. A main drawback in lung cancer diagnosis is the diculty to check whether the exploration is following the correct path to the nodule that has to be biopsied. The most extended guidance uses uoroscopy which implies repeated radiation of clinical sta and patients. Alternatives such as virtual bronchoscopy or electromagnetic navigation are very expensive and not completely robust to blood, mocus or deformations as to be extensively used. We propose a method that extracts and tracks stable lumen regions at di erent levels of the bronchial tree. The tracked regions are stored in a tree that encodes the anatomical structure of the scene which can be useful to retrieve the path to the lesion that the clinician should follow to do the biopsy. We present a multi-expert validation of our anatomical landmark extraction in 3 intra-operative ultrathin explorations.
Keywords: Lung cancer diagnosis; video-bronchoscopy; airway lumen detection; region tracking
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Marta Diez-Ferrer, Debora Gil, Elena Carreño, Susana Padrones, Samantha Aso, Vanesa Vicens, et al. (2017). "Positive Airway Pressure-Enhanced CT to Improve Virtual Bronchoscopic Navigation " . European Respiratory Journal, .
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Esmitt Ramirez, Carles Sanchez, Agnes Borras, Marta Diez-Ferrer, Antoni Rosell, & Debora Gil. (2018). "Image-Based Bronchial Anatomy Codification for Biopsy Guiding in Video Bronchoscopy " In OR 2.0 Context-Aware Operating Theaters, Computer Assisted Robotic Endoscopy, Clinical Image-Based Procedures, and Skin Image Analysis (Vol. 11041).
Abstract: Bronchoscopy examinations allow biopsy of pulmonary nodules with minimum risk for the patient. Even for experienced bronchoscopists, it is difficult to guide the bronchoscope to most distal lesions and obtain an accurate diagnosis. This paper presents an image-based codification of the bronchial anatomy for bronchoscopy biopsy guiding. The 3D anatomy of each patient is codified as a binary tree with nodes representing bronchial levels and edges labeled using their position on images projecting the 3D anatomy from a set of branching points. The paths from the root to leaves provide a codification of navigation routes with spatially consistent labels according to the anatomy observes in video bronchoscopy explorations. We evaluate our labeling approach as a guiding system in terms of the number of bronchial levels correctly codified, also in the number of labels-based instructions correctly supplied, using generalized mixed models and computer-generated data. Results obtained for three independent observers prove the consistency and reproducibility of our guiding system. We trust that our codification based on viewer’s projection might be used as a foundation for the navigation process in Virtual Bronchoscopy systems.
Keywords: Biopsy guiding; Bronchoscopy; Lung biopsy; Intervention guiding; Airway codification
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Debora Gil, Antonio Esteban Lansaque, Agnes Borras, & Carles Sanchez. (2019). "Enhancing virtual bronchoscopy with intra-operative data using a multi-objective GAN " . International Journal of Computer Assisted Radiology and Surgery, 7(1).
Abstract: This manuscript has been withdrawn by bioRxiv due to upload of an incorrect version of the manuscript by the authors. Therefore, this manuscript should not be cited as reference for this project.
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