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| Author | Victor M. Campello; Polyxeni Gkontra; Cristian Izquierdo; Carlos Martin-Isla; Alireza Sojoudi; Peter M. Full; Klaus Maier-Hein; Yao Zhang; Zhiqiang He; Jun Ma; Mario Parreno; Alberto Albiol; Fanwei Kong; Shawn C. Shadden; Jorge Corral Acero; Vaanathi Sundaresan; Mina Saber; Mustafa Elattar; Hongwei Li; Bjoern Menze; Firas Khader; Christoph Haarburger; Cian M. Scannell; Mitko Veta; Adam Carscadden; Kumaradevan Punithakumar; Xiao Liu; Sotirios A. Tsaftaris; Xiaoqiong Huang; Xin Yang; Lei Li; Xiahai Zhuang; David Vilades; Martin L. Descalzo; Andrea Guala; Lucia La Mura; Matthias G. Friedrich; Ria Garg; Julie Lebel; Filipe Henriques; Mahir Karakas; Ersin Cavus; Steffen E. Petersen; Sergio Escalera; Santiago Segui; Jose F. Rodriguez Palomares; Karim Lekadir | ||||
| Title | Multi-Centre, Multi-Vendor and Multi-Disease Cardiac Segmentation: The M&Ms Challenge | Type | Journal Article | ||
| Year | 2021 | Publication | IEEE Transactions on Medical Imaging | Abbreviated Journal | TMI |
Volume  |
40 | Issue | 12 | Pages | 3543-3554 |
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| Abstract | The emergence of deep learning has considerably advanced the state-of-the-art in cardiac magnetic resonance (CMR) segmentation. Many techniques have been proposed over the last few years, bringing the accuracy of automated segmentation close to human performance. However, these models have been all too often trained and validated using cardiac imaging samples from single clinical centres or homogeneous imaging protocols. This has prevented the development and validation of models that are generalizable across different clinical centres, imaging conditions or scanner vendors. To promote further research and scientific benchmarking in the field of generalizable deep learning for cardiac segmentation, this paper presents the results of the Multi-Centre, Multi-Vendor and Multi-Disease Cardiac Segmentation (M&Ms) Challenge, which was recently organized as part of the MICCAI 2020 Conference. A total of 14 teams submitted different solutions to the problem, combining various baseline models, data augmentation strategies, and domain adaptation techniques. The obtained results indicate the importance of intensity-driven data augmentation, as well as the need for further research to improve generalizability towards unseen scanner vendors or new imaging protocols. Furthermore, we present a new resource of 375 heterogeneous CMR datasets acquired by using four different scanner vendors in six hospitals and three different countries (Spain, Canada and Germany), which we provide as open-access for the community to enable future research in the field. | ||||
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| Notes | HUPBA; no proj | Approved | no | ||
| Call Number | Admin @ si @ CGI2021 | Serial | 3653 | ||
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| Author | Jorge Bernal; Nima Tajkbaksh; F. Javier Sanchez; Bogdan J. Matuszewski; Hao Chen; Lequan Yu; Quentin Angermann; Olivier Romain; Bjorn Rustad; Ilangko Balasingham; Konstantin Pogorelov; Sungbin Choi; Quentin Debard; Lena Maier Hein; Stefanie Speidel; Danail Stoyanov; Patrick Brandao; Henry Cordova; Cristina Sanchez Montes; Suryakanth R. Gurudu; Gloria Fernandez Esparrach; Xavier Dray; Jianming Liang; Aymeric Histace | ||||
| Title | Comparative Validation of Polyp Detection Methods in Video Colonoscopy: Results from the MICCAI 2015 Endoscopic Vision Challenge | Type | Journal Article | ||
| Year | 2017 | Publication | IEEE Transactions on Medical Imaging | Abbreviated Journal | TMI |
| Volume |
36 | Issue | 6 | Pages | 1231 - 1249 |
| Keywords | Endoscopic vision; Polyp Detection; Handcrafted features; Machine Learning; Validation Framework | ||||
| Abstract | Colonoscopy is the gold standard for colon cancer screening though still some polyps are missed, thus preventing early disease detection and treatment. Several computational systems have been proposed to assist polyp detection during colonoscopy but so far without consistent evaluation. The lack
of publicly available annotated databases has made it difficult to compare methods and to assess if they achieve performance levels acceptable for clinical use. The Automatic Polyp Detection subchallenge, conducted as part of the Endoscopic Vision Challenge (http://endovis.grand-challenge.org) at the international conference on Medical Image Computing and Computer Assisted Intervention (MICCAI) in 2015, was an effort to address this need. In this paper, we report the results of this comparative evaluation of polyp detection methods, as well as describe additional experiments to further explore differences between methods. We define performance metrics and provide evaluation databases that allow comparison of multiple methodologies. Results show that convolutional neural networks (CNNs) are the state of the art. Nevertheless it is also demonstrated that combining different methodologies can lead to an improved overall performance. |
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| Notes | MV; 600.096; 600.075 | Approved | no | ||
| Call Number | Admin @ si @ BTS2017 | Serial | 2949 | ||
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| Author | Fernando Vilariño; Panagiota Spyridonos; Fosca De Iorio; Jordi Vitria; Fernando Azpiroz; Petia Radeva | ||||
| Title | Intestinal Motility Assessment With Video Capsule Endoscopy: Automatic Annotation of Phasic Intestinal Contractions | Type | Journal Article | ||
| Year | 2010 | Publication | IEEE Transactions on Medical Imaging | Abbreviated Journal | TMI |
| Volume |
29 | Issue | 2 | Pages | 246-259 |
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| Abstract | Intestinal motility assessment with video capsule endoscopy arises as a novel and challenging clinical fieldwork. This technique is based on the analysis of the patterns of intestinal contractions shown in a video provided by an ingestible capsule with a wireless micro-camera. The manual labeling of all the motility events requires large amount of time for offline screening in search of findings with low prevalence, which turns this procedure currently unpractical. In this paper, we propose a machine learning system to automatically detect the phasic intestinal contractions in video capsule endoscopy, driving a useful but not feasible clinical routine into a feasible clinical procedure. Our proposal is based on a sequential design which involves the analysis of textural, color, and blob features together with SVM classifiers. Our approach tackles the reduction of the imbalance rate of data and allows the inclusion of domain knowledge as new stages in the cascade. We present a detailed analysis, both in a quantitative and a qualitative way, by providing several measures of performance and the assessment study of interobserver variability. Our system performs at 70% of sensitivity for individual detection, whilst obtaining equivalent patterns to those of the experts for density of contractions. | ||||
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| Corporate Author | IEEE | Thesis | |||
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| ISSN | 0278-0062 | ISBN | Medium | ||
| Area | 800 | Expedition | Conference | ||
| Notes | MILAB;MV;OR;SIAI | Approved | no | ||
| Call Number | BCNPCL @ bcnpcl @ VSD2010; IAM @ iam @ VSI2010 | Serial | 1281 | ||
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| Author | Jaume Garcia; Debora Gil; Luis Badiella; Aura Hernandez-Sabate; Francesc Carreras; Sandra Pujades; Enric Marti | ||||
| Title | A Normalized Framework for the Design of Feature Spaces Assessing the Left Ventricular Function | Type | Journal Article | ||
| Year | 2010 | Publication | IEEE Transactions on Medical Imaging | Abbreviated Journal | TMI |
| Volume |
29 | Issue | 3 | Pages | 733-745 |
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| Abstract | A through description of the left ventricle functionality requires combining complementary regional scores. A main limitation is the lack of multiparametric normality models oriented to the assessment of regional wall motion abnormalities (RWMA). This paper covers two main topics involved in RWMA assessment. We propose a general framework allowing the fusion and comparison across subjects of different regional scores. Our framework is used to explore which combination of regional scores (including 2-D motion and strains) is better suited for RWMA detection. Our statistical analysis indicates that for a proper (within interobserver variability) identification of RWMA, models should consider motion and extreme strains. | ||||
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| ISSN | 0278-0062 | ISBN | Medium | ||
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| Notes | IAM | Approved | no | ||
| Call Number | IAM @ iam @ GGH2010b | Serial | 1507 | ||
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| Author | Aura Hernandez-Sabate; Debora Gil;Eduard Fernandez-Nofrerias;Petia Radeva; Enric Marti | ||||
| Title | Approaching Artery Rigid Dynamics in IVUS | Type | Journal Article | ||
| Year | 2009 | Publication | IEEE Transactions on Medical Imaging | Abbreviated Journal | TMI |
| Volume |
28 | Issue | 11 | Pages | 1670-1680 |
| Keywords | Fourier analysis; intravascular ultrasound (IVUS) dynamics; longitudinal motion; quality measures; tissue deformation. | ||||
| Abstract | Tissue biomechanical properties (like strain and stress) are playing an increasing role in diagnosis and long-term treatment of intravascular coronary diseases. Their assessment strongly relies on estimation of vessel wall deformation. Since intravascular ultrasound (IVUS) sequences allow visualizing vessel morphology and reflect its dynamics, this technique represents a useful tool for evaluation of tissue mechanical properties. Image misalignment introduced by vessel-catheter motion is a major artifact for a proper tracking of tissue deformation. In this work, we focus on compensating and assessing IVUS rigid in-plane motion due to heart beating. Motion parameters are computed by considering both the vessel geometry and its appearance in the image. Continuum mechanics laws serve to introduce a novel score measuring motion reduction in in vivo sequences. Synthetic experiments validate the proposed score as measure of motion parameters accuracy; whereas results in in vivo pullbacks show the reliability of the presented methodologies in clinical cases. | ||||
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| ISSN | 0278-0062 | ISBN | Medium | ||
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| Notes | IAM; MILAB | Approved | no | ||
| Call Number | IAM @ iam @ HGF2009 | Serial | 1545 | ||
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| Author | Debora Gil; Oriol Rodriguez-Leor; Petia Radeva; J. Mauri | ||||
| Title | Myocardial Perfusion Characterization From Contrast Angiography Spectral Distribution | Type | Journal Article | ||
| Year | 2008 | Publication | IEEE Transactions on Medical Imaging | Abbreviated Journal | |
| Volume |
27 | Issue | 5 | Pages | 641-649 |
| Keywords | Contrast angiography; myocardial perfusion; spectral analysis. | ||||
| Abstract | Despite recovering a normal coronary flow after acute myocardial infarction, percutaneous coronary intervention does not guarantee a proper perfusion (irrigation) of the infarcted area. This damage in microcirculation integrity may detrimentally affect the patient survival. Visual assessment of the myocardium opacification in contrast angiography serves to define a subjective score of the microcirculation integrity myocardial blush analysis (MBA). Although MBA correlates with patient prognosis its visual assessment is a very difficult task that requires of a highly expertise training in order to achieve a good intraobserver and interobserver agreement. In this paper, we provide objective descriptors of the myocardium staining pattern by analyzing the spectrum of the image local statistics. The descriptors proposed discriminate among the different phenomena observed in the angiographic sequence and allow defining an objective score of the myocardial perfusion. | ||||
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| Notes | IAM;MILAB | Approved | no | ||
| Call Number | IAM @ iam @ GRR2008 | Serial | 1541 | ||
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| Author | Debora Gil; Aura Hernandez-Sabate; Oriol Rodriguez; J. Mauri; Petia Radeva | ||||
| Title | Statistical Strategy for Anisotropic Adventitia Modelling in IVUS | Type | Journal Article | ||
| Year | 2006 | Publication | IEEE Transactions on Medical Imaging | Abbreviated Journal | |
| Volume |
25 | Issue | 6 | Pages | 768-778 |
| Keywords | Corners; T-junctions; Wavelets | ||||
| Abstract | Vessel plaque assessment by analysis of intravascular ultrasound sequences is a useful tool for cardiac disease diagnosis and intervention. Manual detection of luminal (inner) and mediaadventitia (external) vessel borders is the main activity of physicians in the process of lumen narrowing (plaque) quantification. Difficult definition of vessel border descriptors, as well as, shades, artifacts, and blurred signal response due to ultrasound physical properties trouble automated adventitia segmentation. In order to efficiently approach such a complex problem, we propose blending advanced anisotropic filtering operators and statistical classification techniques into a vessel border modelling strategy. Our systematic statistical analysis shows that the reported adventitia detection achieves an accuracy in the range of interobserver variability regardless of plaque nature, vessel geometry, and incomplete vessel borders. Index Terms–-Anisotropic processing, intravascular ultrasound (IVUS), vessel border segmentation, vessel structure classification. | ||||
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| Notes | IAM;MILAB | Approved | no | ||
| Call Number | IAM @ iam @ GHR2006 | Serial | 1525 | ||
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| Author | Amir A.Amini; Yasheng Chen; Mohamed Elayyadi; Petia Radeva | ||||
| Title | Tag Surface Reconstruction and Tracking of Myocardial Beads from SPAMM-MRI with Parametric B-Spline Surfaces | Type | Journal | ||
| Year | 2001 | Publication | IEEE Transactions on Medical Imaging | Abbreviated Journal | TMI |
| Volume |
20 | Issue | 2 | Pages | 94–103 |
| Keywords | B-spline surfaces, cardiac motion, myocardial beads, myocardial infarction, tagged MRI. | ||||
| Abstract | Magnetic resonance imaging (MRI) is unique in its ability to noninvasively and selectively alter tissue magnetization, and create tag planes intersecting image slices. The resulting grid of signal voids allows for tracking deformations of tissues in otherwise homogeneous-signal myocardial regions. In this paper, we propose a specific spatial modulation of magnetization (SPAMM) imaging protocol together with efficient techniques for measurement of three-dimensional (3-D) motion of material points of the human heart (referred to as myocardial beads) from images collected with the SPAMM method. The techniques make use of tagged images in orthogonal views by explicitly reconstructing 3-D B-spline surface representation of tag planes (tag planes in two orthogonal orientations intersecting the short-axis (SA) image slices and tag planes in an orientation orthogonal to the short-axis tag planes intersecting long-axis (LA) image slices). The developed methods allow for viewing deformations of 3-D tag surfaces, spatial correspondence of long-axis and short-axis image slice and tag positions, as well as nonrigid movement of myocardial beads as a function of time. | ||||
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| Notes | MILAB | Approved | no | ||
| Call Number | BCNPCL @ bcnpcl @ ACE2001; IAM @ iam @ ACE2001 | Serial | 180 | ||
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