|
|
Alberto Hidalgo, Ferran Poveda, Enric Marti, Debora Gil, Albert Andaluz, Francesc Carreras, et al. (2012). Evidence of continuous helical structure of the cardiac ventricular anatomy assessed by diffusion tensor imaging magnetic resonance multiresolution tractography. ECR - European Radiology, 3(1), 361–362.
Abstract: Deep understanding of myocardial structure linking morphology and func- tion of the heart would unravel crucial knowledge for medical and surgical clinical procedures and studies. Diffusion tensor MRI provides a discrete measurement of the 3D arrangement of myocardial fibres by the observation of local anisotropic
diffusion of water molecules in biological tissues. In this work, we present a multi- scale visualisation technique based on DT-MRI streamlining capable of uncovering additional properties of the architectural organisation of the heart. Methods and Materials: We selected the John Hopkins University (JHU) Canine Heart Dataset, where the long axis cardiac plane is aligned with the scanner’s Z- axis. Their equipment included a 4-element passed array coil emitting a 1.5 T. For DTI acquisition, a 3D-FSE sequence is apply. We used 200 seeds for full-scale tractography, while we applied a MIP mapping technique for simplified tractographic reconstruction. In this case, we reduced each DTI 3D volume dimensions by order- two magnitude before streamlining.
Our simplified tractographic reconstruction method keeps the main geometric features of fibres, allowing for an easier identification of their global morphological disposition, including the ventricular basal ring. Moreover, we noticed a clearly visible helical disposition of the myocardial fibres, in line with the helical myocardial band ventricular structure described by Torrent-Guasp. Finally, our simplified visualisation with single tracts identifies the main segments of the helical ventricular architecture.
DT-MRI makes possible the identification of a continuous helical architecture of the myocardial fibres, which validates Torrent-Guasp’s helical myocardial band ventricular anatomical model.
|
|
|
|
Enric Marti, Jaume Rocarias, & Ricardo Toledo. (2008). Caronte: gestión flexible de grupos de alumnos en asignaturas de universidad y actividades sobre estos grupos. Barcelona.
|
|
|
|
Fernando Vilariño, & Petia Radeva. (2002). Patch-Optimized Discriminant Active Contours for Medical Image Segmentation. In Iberoamerican Conference on Artificial Intelligence. Springer Verlag.
|
|
|
|
David Roche, Debora Gil, & Jesus Giraldo. (2012). Assessing agonist efficacy in an uncertain Em world. In A. Christopoulus and M. Bouvier (Ed.), 40th Keystone Symposia on mollecular and celular biology (79). Keystone Symposia.
Abstract: The operational model of agonism has been widely used for the analysis of agonist action since its formulation in 1983. The model includes the Em parameter, which is defined as the maximum response of the system. The methods for Em estimation provide Em values not significantly higher than the maximum responses achieved by full agonists. However, it has been found that that some classes of compounds as, for instance, superagonists and positive allosteric modulators can increase the full agonist maximum response, implying upper limits for Em and thereby posing doubts on the validity of Em estimates. Because of the correlation between Em and operational efficacy, τ, wrong Em estimates will yield wrong τ estimates.
In this presentation, the operational model of agonism and various methods for the simulation of allosteric modulation will be analyzed. Alternatives for curve fitting will be presented and discussed.
|
|
|
|
Javier Vazquez, J. Kevin O'Regan, Maria Vanrell, & Graham D. Finlayson. (2012). A new spectrally sharpened basis to predict colour naming, unique hues, and hue cancellation. VSS - Journal of Vision, 12(6 (7)), 1–14.
Abstract: When light is reflected off a surface, there is a linear relation between the three human photoreceptor responses to the incoming light and the three photoreceptor responses to the reflected light. Different colored surfaces have different linear relations. Recently, Philipona and O'Regan (2006) showed that when this relation is singular in a mathematical sense, then the surface is perceived as having a highly nameable color. Furthermore, white light reflected by that surface is perceived as corresponding precisely to one of the four psychophysically measured unique hues. However, Philipona and O'Regan's approach seems unrelated to classical psychophysical models of color constancy. In this paper we make this link. We begin by transforming cone sensors to spectrally sharpened counterparts. In sharp color space, illumination change can be modeled by simple von Kries type scalings of response values within each of the spectrally sharpened response channels. In this space, Philipona and O'Regan's linear relation is captured by a simple Land-type color designator defined by dividing reflected light by incident light. This link between Philipona and O'Regan's theory and Land's notion of color designator gives the model biological plausibility. We then show that Philipona and O'Regan's singular surfaces are surfaces which are very close to activating only one or only two of such newly defined spectrally sharpened sensors, instead of the usual three. Closeness to zero is quantified in a new simplified measure of singularity which is also shown to relate to the chromaticness of colors. As in Philipona and O'Regan's original work, our new theory accounts for a large variety of psychophysical color data.
|
|
|
|
Jordi Roca, A.Owen, G.Jordan, Y.Ling, C. Alejandro Parraga, & A.Hurlbert. (2011). Inter-individual Variations in Color Naming and the Structure of 3D Color Space. In Journal of Vision (Vol. 12, 166).
Abstract: 36.307
Many everyday behavioural uses of color vision depend on color naming ability, which is neither measured nor predicted by most standardized tests of color vision, for either normal or anomalous color vision. Here we demonstrate a new method to quantify color naming ability by deriving a compact computational description of individual 3D color spaces. Methods: Individual observers underwent standardized color vision diagnostic tests (including anomaloscope testing) and a series of custom-made color naming tasks using 500 distinct color samples, either CRT stimuli (“light”-based) or Munsell chips (“surface”-based), with both forced- and free-choice color naming paradigms. For each subject, we defined his/her color solid as the set of 3D convex hulls computed for each basic color category from the relevant collection of categorised points in perceptually uniform CIELAB space. From the parameters of the convex hulls, we derived several indices to characterise the 3D structure of the color solid and its inter-individual variations. Using a reference group of 25 normal trichromats (NT), we defined the degree of normality for the shape, location and overlap of each color region, and the extent of “light”-“surface” agreement. Results: Certain features of color perception emerge from analysis of the average NT color solid, e.g.: (1) the white category is slightly shifted towards blue; and (2) the variability in category border location across NT subjects is asymmetric across color space, with least variability in the blue/green region. Comparisons between individual and average NT indices reveal specific naming “deficits”, e.g.: (1) Category volumes for white, green, brown and grey are expanded for anomalous trichromats and dichromats; and (2) the focal structure of color space is disrupted more in protanopia than other forms of anomalous color vision. The indices both capture the structure of subjective color spaces and allow us to quantify inter-individual differences in color naming ability.
|
|
|
|
C. Alejandro Parraga, Jordi Roca, & Maria Vanrell. (2011). Do Basic Colors Influence Chromatic Adaptation? VSS - Journal of Vision, 11(11), 85.
Abstract: Color constancy (the ability to perceive colors relatively stable under different illuminants) is the result of several mechanisms spread across different neural levels and responding to several visual scene cues. It is usually measured by estimating the perceived color of a grey patch under an illuminant change. In this work, we hypothesize whether chromatic adaptation (without a reference white or grey) could be driven by certain colors, specifically those corresponding to the universal color terms proposed by Berlin and Kay (1969). To this end we have developed a new psychophysical paradigm in which subjects adjust the color of a test patch (in CIELab space) to match their memory of the best example of a given color chosen from the universal terms list (grey, red, green, blue, yellow, purple, pink, orange and brown). The test patch is embedded inside a Mondrian image and presented on a calibrated CRT screen inside a dark cabin. All subjects were trained to “recall” their most exemplary colors reliably from memory and asked to always produce the same basic colors when required under several adaptation conditions. These include achromatic and colored Mondrian backgrounds, under a simulated D65 illuminant and several colored illuminants. A set of basic colors were measured for each subject under neutral conditions (achromatic background and D65 illuminant) and used as “reference” for the rest of the experiment. The colors adjusted by the subjects in each adaptation condition were compared to the reference colors under the corresponding illuminant and a “constancy index” was obtained for each of them. Our results show that for some colors the constancy index was better than for grey. The set of best adapted colors in each condition were common to a majority of subjects and were dependent on the chromaticity of the illuminant and the chromatic background considered.
|
|
|
|
Xavier Otazu, C. Alejandro Parraga, & Maria Vanrell. (2010). Towards a unified chromatic inducction model. VSS - Journal of Vision, 10(12:5), 1–24.
Abstract: In a previous work (X. Otazu, M. Vanrell, & C. A. Párraga, 2008b), we showed how several brightness induction effects can be predicted using a simple multiresolution wavelet model (BIWaM). Here we present a new model for chromatic induction processes (termed Chromatic Induction Wavelet Model or CIWaM), which is also implemented on a multiresolution framework and based on similar assumptions related to the spatial frequency and the contrast surround energy of the stimulus. The CIWaM can be interpreted as a very simple extension of the BIWaM to the chromatic channels, which in our case are defined in the MacLeod-Boynton (lsY) color space. This new model allows us to unify both chromatic assimilation and chromatic contrast effects in a single mathematical formulation. The predictions of the CIWaM were tested by means of several color and brightness induction experiments, which showed an acceptable agreement between model predictions and psychophysical data.
Keywords: Visual system; Color induction; Wavelet transform
|
|
|
|
Onur Ferhat, Fernando Vilariño, & F. Javier Sanchez. (2014). A cheap portable eye-tracker solution for common setups. JEMR - Journal of Eye Movement Research, 7(3), 1–10.
Abstract: We analyze the feasibility of a cheap eye-tracker where the hardware consists of a single webcam and a Raspberry Pi device. Our aim is to discover the limits of such a system and to see whether it provides an acceptable performance. We base our work on the open source Opengazer (Zielinski, 2013) and we propose several improvements to create a robust, real-time system which can work on a computer with 30Hz sampling rate. After assessing the accuracy of our eye-tracker in elaborated experiments involving 12 subjects under 4 different system setups, we install it on a Raspberry Pi to create a portable stand-alone eye-tracker which achieves 1.42° horizontal accuracy with 3Hz refresh rate for a building cost of 70 Euros.
|
|
|
|
Alicia Fornes, & Josep Llados. (2010). A Symbol-dependent Writer Identifcation Approach in Old Handwritten Music Scores. In 12th International Conference on Frontiers in Handwriting Recognition (pp. 634–639).
Abstract: Writer identification consists in determining the writer of a piece of handwriting from a set of writers. In this paper we introduce a symbol-dependent approach for identifying the writer of old music scores, which is based on two symbol recognition methods. The main idea is to use the Blurred Shape Model descriptor and a DTW-based method for detecting, recognizing and describing the music clefs and notes. The proposed approach has been evaluated in a database of old music scores, achieving very high writer identification rates.
|
|
|
|
Debora Gil, Agnes Borras, Manuel Ballester, Francesc Carreras, Ruth Aris, Manuel Vazquez, et al. (2011). MIOCARDIA: Integrating cardiac function and muscular architecture for a better diagnosis. In Association for Computing Machinery (Ed.), 14th International Symposium on Applied Sciences in Biomedical and Communication Technologies. Barcelona, Spain.
Abstract: Deep understanding of myocardial structure of the heart would unravel crucial knowledge for clinical and medical procedures. The MIOCARDIA project is a multidisciplinary project in cooperation with l'Hospital de la Santa Creu i de Sant Pau, Clinica la Creu Blanca and Barcelona Supercomputing Center. The ultimate goal of this project is defining a computational model of the myocardium. The model takes into account the deep interrelation between the anatomy and the mechanics of the heart. The paper explains the workflow of the MIOCARDIA project. It also introduces a multiresolution reconstruction technique based on DT-MRI streamlining for simplified global myocardial model generation. Our reconstructions can restore the most complex myocardial structures and provides evidences of a global helical organization.
|
|
|
|
Fernando Vilariño, Debora Gil, & Petia Radeva. (2004). A Novel FLDA Formulation for Numerical Stability Analysis. In P. R. and I. A. J. Vitrià (Ed.), Recent Advances in Artificial Intelligence Research and Development (Vol. 113, pp. 77–84). IOS Press.
Abstract: Fisher Linear Discriminant Analysis (FLDA) is one of the most popular techniques used in classification applying dimensional reduction. The numerical scheme involves the inversion of the within-class scatter matrix, which makes FLDA potentially ill-conditioned when it becomes singular. In this paper we present a novel explicit formulation of FLDA in terms of the eccentricity ratio and eigenvector orientations of the within-class scatter matrix. An analysis of this function will characterize those situations where FLDA response is not reliable because of numerical instability. This can solve common situations of poor classification performance in computer vision.
Keywords: Supervised Learning; Linear Discriminant Analysis; Numerical Stability; Computer Vision
|
|
|
|
J.Kuhn, A.Nussbaumer, J.Pirker, Dimosthenis Karatzas, A. Pagani, O.Conlan, et al. (2015). Advancing Physics Learning Through Traversing a Multi-Modal Experimentation Space. In Workshop Proceedings on the 11th International Conference on Intelligent Environments (Vol. 19, pp. 373–380).
Abstract: Translating conceptual knowledge into real world experiences presents a significant educational challenge. This position paper presents an approach that supports learners in moving seamlessly between conceptual learning and their application in the real world by bringing physical and virtual experiments into everyday settings. Learners are empowered in conducting these situated experiments in a variety of physical settings by leveraging state of the art mobile, augmented reality, and virtual reality technology. A blend of mobile-based multi-sensory physical experiments, augmented reality and enabling virtual environments can allow learners to bridge their conceptual learning with tangible experiences in a completely novel manner. This approach focuses on the learner by applying self-regulated personalised learning techniques, underpinned by innovative pedagogical approaches and adaptation techniques, to ensure that the needs and preferences of each learner are catered for individually.
|
|
|
|
F.X. Perez, F. Javier Sanchez, Xavier Binefa, Xavier Roca, Jordi Vitria, & Juan J. Villanueva. (1993). A mathematical morphology-based system for IC´s inspection and analysis. In Institute of Physics Conferences Series (Vol. 135, 381–384). Institute of Physics.
|
|
|
|
Thierry Brouard, A. Delaplace, Muhammad Muzzamil Luqman, H. Cardot, & Jean-Yves Ramel. (2010). Design of Evolutionary Methods Applied to the Learning of Bayesian Nerwork Structures. In Ahmed Rebai (Ed.), Bayesian Network (pp. 13–37). Sciyo.
|
|
