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Author Marta Ligero; Alonso Garcia Ruiz; Cristina Viaplana; Guillermo Villacampa; Maria V Raciti; Jaid Landa; Ignacio Matos; Juan Martin Liberal; Maria Ochoa de Olza; Cinta Hierro; Joaquin Mateo; Macarena Gonzalez; Rafael Morales Barrera; Cristina Suarez; Jordi Rodon; Elena Elez; Irene Braña; Eva Muñoz-Couselo; Ana Oaknin; Roberta Fasani; Paolo Nuciforo; Debora Gil; Carlota Rubio Perez; Joan Seoane; Enriqueta Felip; Manuel Escobar; Josep Tabernero; Joan Carles; Rodrigo Dienstmann; Elena Garralda; Raquel Perez Lopez edit  url
doi  openurl
  Title A CT-based radiomics signature is associated with response to immune checkpoint inhibitors in advanced solid tumors Type Journal Article
  Year 2021 Publication Radiology Abbreviated Journal  
  Volume 299 Issue 1 Pages 109-119  
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  Abstract Background Reliable predictive imaging markers of response to immune checkpoint inhibitors are needed. Purpose To develop and validate a pretreatment CT-based radiomics signature to predict response to immune checkpoint inhibitors in advanced solid tumors. Materials and Methods In this retrospective study, a radiomics signature was developed in patients with advanced solid tumors (including breast, cervix, gastrointestinal) treated with anti-programmed cell death-1 or programmed cell death ligand-1 monotherapy from August 2012 to May 2018 (cohort 1). This was tested in patients with bladder and lung cancer (cohorts 2 and 3). Radiomics variables were extracted from all metastases delineated at pretreatment CT and selected by using an elastic-net model. A regression model combined radiomics and clinical variables with response as the end point. Biologic validation of the radiomics score with RNA profiling of cytotoxic cells (cohort 4) was assessed with Mann-Whitney analysis. Results The radiomics signature was developed in 85 patients (cohort 1: mean age, 58 years ± 13 [standard deviation]; 43 men) and tested on 46 patients (cohort 2: mean age, 70 years ± 12; 37 men) and 47 patients (cohort 3: mean age, 64 years ± 11; 40 men). Biologic validation was performed in a further cohort of 20 patients (cohort 4: mean age, 60 years ± 13; 14 men). The radiomics signature was associated with clinical response to immune checkpoint inhibitors (area under the curve [AUC], 0.70; 95% CI: 0.64, 0.77; P < .001). In cohorts 2 and 3, the AUC was 0.67 (95% CI: 0.58, 0.76) and 0.67 (95% CI: 0.56, 0.77; P < .001), respectively. A radiomics-clinical signature (including baseline albumin level and lymphocyte count) improved on radiomics-only performance (AUC, 0.74 [95% CI: 0.63, 0.84; P < .001]; Akaike information criterion, 107.00 and 109.90, respectively). Conclusion A pretreatment CT-based radiomics signature is associated with response to immune checkpoint inhibitors, likely reflecting the tumor immunophenotype. © RSNA, 2021 Online supplemental material is available for this article. See also the editorial by Summers in this issue.  
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  Notes IAM; 600.145 Approved no  
  Call Number Admin @ si @ LGV2021 Serial 3593  
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Author D. Seron; F. Moreso; C. Gratin; Jordi Vitria; E. Condom edit  url
openurl 
  Title Automated classification of renal interstitium and tubules by local texture analysis and a neural network Type Journal Article
  Year 1996 Publication Analytical and Quantitative Cytology and Histology Abbreviated Journal  
  Volume 18 Issue 5 Pages 410-9, PMID: 8908314  
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  Notes OR;MV Approved no  
  Call Number BCNPCL @ bcnpcl @ SMG1996 Serial 76  
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Author Carlos Martin Isla; Victor M Campello; Cristian Izquierdo; Kaisar Kushibar; Carla Sendra Balcells; Polyxeni Gkontra; Alireza Sojoudi; Mitchell J Fulton; Tewodros Weldebirhan Arega; Kumaradevan Punithakumar; Lei Li; Xiaowu Sun; Yasmina Al Khalil; Di Liu; Sana Jabbar; Sandro Queiros; Francesco Galati; Moona Mazher; Zheyao Gao; Marcel Beetz; Lennart Tautz; Christoforos Galazis; Marta Varela; Markus Hullebrand; Vicente Grau; Xiahai Zhuang; Domenec Puig; Maria A Zuluaga; Hassan Mohy Ud Din; Dimitris Metaxas; Marcel Breeuwer; Rob J van der Geest; Michelle Noga; Stephanie Bricq; Mark E Rentschler; Andrea Guala; Steffen E Petersen; Sergio Escalera; Jose F Rodriguez Palomares; Karim Lekadir edit  url
doi  openurl
  Title Deep Learning Segmentation of the Right Ventricle in Cardiac MRI: The M&ms Challenge Type Journal Article
  Year 2023 Publication IEEE Journal of Biomedical and Health Informatics Abbreviated Journal JBHI  
  Volume 27 Issue 7 Pages 3302-3313  
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  Abstract In recent years, several deep learning models have been proposed to accurately quantify and diagnose cardiac pathologies. These automated tools heavily rely on the accurate segmentation of cardiac structures in MRI images. However, segmentation of the right ventricle is challenging due to its highly complex shape and ill-defined borders. Hence, there is a need for new methods to handle such structure's geometrical and textural complexities, notably in the presence of pathologies such as Dilated Right Ventricle, Tricuspid Regurgitation, Arrhythmogenesis, Tetralogy of Fallot, and Inter-atrial Communication. The last MICCAI challenge on right ventricle segmentation was held in 2012 and included only 48 cases from a single clinical center. As part of the 12th Workshop on Statistical Atlases and Computational Models of the Heart (STACOM 2021), the M&Ms-2 challenge was organized to promote the interest of the research community around right ventricle segmentation in multi-disease, multi-view, and multi-center cardiac MRI. Three hundred sixty CMR cases, including short-axis and long-axis 4-chamber views, were collected from three Spanish hospitals using nine different scanners from three different vendors, and included a diverse set of right and left ventricle pathologies. The solutions provided by the participants show that nnU-Net achieved the best results overall. However, multi-view approaches were able to capture additional information, highlighting the need to integrate multiple cardiac diseases, views, scanners, and acquisition protocols to produce reliable automatic cardiac segmentation algorithms.  
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  Call Number Admin @ si @ MCI2023 Serial 3880  
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Author Giuseppe Pezzano; Oliver Diaz; Vicent Ribas Ripoll; Petia Radeva edit  url
doi  openurl
  Title CoLe-CNN+: Context learning – Convolutional neural network for COVID-19-Ground-Glass-Opacities detection and segmentation Type Journal Article
  Year 2021 Publication Computers in Biology and Medicine Abbreviated Journal CBM  
  Volume 136 Issue Pages 104689  
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  Abstract The most common tool for population-wide COVID-19 identification is the Reverse Transcription-Polymerase Chain Reaction test that detects the presence of the virus in the throat (or sputum) in swab samples. This test has a sensitivity between 59% and 71%. However, this test does not provide precise information regarding the extension of the pulmonary infection. Moreover, it has been proven that through the reading of a computed tomography (CT) scan, a clinician can provide a more complete perspective of the severity of the disease. Therefore, we propose a comprehensive system for fully-automated COVID-19 detection and lesion segmentation from CT scans, powered by deep learning strategies to support decision-making process for the diagnosis of COVID-19.  
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  Notes MILAB; no menciona Approved no  
  Call Number Admin @ si @ PDR2021 Serial 3635  
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Author Diana Ramirez Cifuentes; Ana Freire; Ricardo Baeza Yates; Nadia Sanz Lamora; Aida Alvarez; Alexandre Gonzalez; Meritxell Lozano; Roger Llobet; Diego Velazquez; Josep M. Gonfaus; Jordi Gonzalez edit  url
doi  openurl
  Title Characterization of Anorexia Nervosa on Social Media: Textual, Visual, Relational, Behavioral, and Demographical Analysis Type Journal Article
  Year 2021 Publication Journal of Medical Internet Research Abbreviated Journal JMIR  
  Volume 23 Issue 7 Pages e25925  
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  Abstract Background: Eating disorders are psychological conditions characterized by unhealthy eating habits. Anorexia nervosa (AN) is defined as the belief of being overweight despite being dangerously underweight. The psychological signs involve emotional and behavioral issues. There is evidence that signs and symptoms can manifest on social media, wherein both harmful and beneficial content is shared daily.  
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  Notes ISE Approved no  
  Call Number Admin @ si @ RFB2021 Serial 3665  
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Author O.F.Ahmad; Y.Mori; M.Misawa; S.Kudo; J.T.Anderson; Jorge Bernal edit  url
doi  openurl
  Title Establishing key research questions for the implementation of artificial intelligence in colonoscopy: a modified Delphi method Type Journal Article
  Year 2021 Publication Endoscopy Abbreviated Journal END  
  Volume 53 Issue 9 Pages 893-901  
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  Abstract BACKGROUND : Artificial intelligence (AI) research in colonoscopy is progressing rapidly but widespread clinical implementation is not yet a reality. We aimed to identify the top implementation research priorities. METHODS : An established modified Delphi approach for research priority setting was used. Fifteen international experts, including endoscopists and translational computer scientists/engineers, from nine countries participated in an online survey over 9 months. Questions related to AI implementation in colonoscopy were generated as a long-list in the first round, and then scored in two subsequent rounds to identify the top 10 research questions. RESULTS : The top 10 ranked questions were categorized into five themes. Theme 1: clinical trial design/end points (4 questions), related to optimum trial designs for polyp detection and characterization, determining the optimal end points for evaluation of AI, and demonstrating impact on interval cancer rates. Theme 2: technological developments (3 questions), including improving detection of more challenging and advanced lesions, reduction of false-positive rates, and minimizing latency. Theme 3: clinical adoption/integration (1 question), concerning the effective combination of detection and characterization into one workflow. Theme 4: data access/annotation (1 question), concerning more efficient or automated data annotation methods to reduce the burden on human experts. Theme 5: regulatory approval (1 question), related to making regulatory approval processes more efficient. CONCLUSIONS : This is the first reported international research priority setting exercise for AI in colonoscopy. The study findings should be used as a framework to guide future research with key stakeholders to accelerate the clinical implementation of AI in endoscopy.  
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  Notes ISE Approved no  
  Call Number Admin @ si @ AMM2021 Serial 3670  
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Author Shiqi Yang; Yaxing Wang; Joost Van de Weijer; Luis Herranz; Shangling Jui edit   pdf
url  openurl
  Title Exploiting the Intrinsic Neighborhood Structure for Source-free Domain Adaptation Type Conference Article
  Year 2021 Publication Thirty-fifth Conference on Neural Information Processing Systems (NeurIPS 2021) Abbreviated Journal  
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  Abstract Domain adaptation (DA) aims to alleviate the domain shift between source domain and target domain. Most DA methods require access to the source data, but often that is not possible (e.g. due to data privacy or intellectual property). In this paper, we address the challenging source-free domain adaptation (SFDA) problem, where the source pretrained model is adapted to the target domain in the absence of source data. Our method is based on the observation that target data, which might no longer align with the source domain classifier, still forms clear clusters. We capture this intrinsic structure by defining local affinity of the target data, and encourage label consistency among data with high local affinity. We observe that higher affinity should be assigned to reciprocal neighbors, and propose a self regularization loss to decrease the negative impact of noisy neighbors. Furthermore, to aggregate information with more context, we consider expanded neighborhoods with small affinity values. In the experimental results we verify that the inherent structure of the target features is an important source of information for domain adaptation. We demonstrate that this local structure can be efficiently captured by considering the local neighbors, the reciprocal neighbors, and the expanded neighborhood. Finally, we achieve state-of-the-art performance on several 2D image and 3D point cloud recognition datasets. Code is available in https://github.com/Albert0147/SFDA_neighbors.  
  Address Online; December 7-10, 2021  
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  Area Expedition Conference NIPS  
  Notes LAMP; 600.147; 600.141 Approved no  
  Call Number Admin @ si @ Serial 3691  
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Author Dustin Carrion Ojeda; Hong Chen; Adrian El Baz; Sergio Escalera; Chaoyu Guan; Isabelle Guyon; Ihsan Ullah; Xin Wang; Wenwu Zhu edit   pdf
url  openurl
  Title NeurIPS’22 Cross-Domain MetaDL competition: Design and baseline results Type Conference Article
  Year 2022 Publication Understanding Social Behavior in Dyadic and Small Group Interactions Abbreviated Journal  
  Volume 191 Issue Pages 24-37  
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  Abstract We present the design and baseline results for a new challenge in the ChaLearn meta-learning series, accepted at NeurIPS'22, focusing on “cross-domain” meta-learning. Meta-learning aims to leverage experience gained from previous tasks to solve new tasks efficiently (i.e., with better performance, little training data, and/or modest computational resources). While previous challenges in the series focused on within-domain few-shot learning problems, with the aim of learning efficiently N-way k-shot tasks (i.e., N class classification problems with k training examples), this competition challenges the participants to solve “any-way” and “any-shot” problems drawn from various domains (healthcare, ecology, biology, manufacturing, and others), chosen for their humanitarian and societal impact. To that end, we created Meta-Album, a meta-dataset of 40 image classification datasets from 10 domains, from which we carve out tasks with any number of “ways” (within the range 2-20) and any number of “shots” (within the range 1-20). The competition is with code submission, fully blind-tested on the CodaLab challenge platform. The code of the winners will be open-sourced, enabling the deployment of automated machine learning solutions for few-shot image classification across several domains.  
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  Notes HUPBA; no menciona Approved no  
  Call Number Admin @ si @ CCB2022 Serial 3802  
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Author Adam Fodor; Rachid R. Saboundji; Julio C. S. Jacques Junior; Sergio Escalera; David Gallardo Pujol; Andras Lorincz edit  url
openurl 
  Title Multimodal Sentiment and Personality Perception Under Speech: A Comparison of Transformer-based Architectures Type Conference Article
  Year 2022 Publication Understanding Social Behavior in Dyadic and Small Group Interactions Abbreviated Journal  
  Volume 173 Issue Pages 218-241  
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  Abstract Human-machine, human-robot interaction, and collaboration appear in diverse fields, from homecare to Cyber-Physical Systems. Technological development is fast, whereas real-time methods for social communication analysis that can measure small changes in sentiment and personality states, including visual, acoustic and language modalities are lagging, particularly when the goal is to build robust, appearance invariant, and fair methods. We study and compare methods capable of fusing modalities while satisfying real-time and invariant appearance conditions. We compare state-of-the-art transformer architectures in sentiment estimation and introduce them in the much less explored field of personality perception. We show that the architectures perform differently on automatic sentiment and personality perception, suggesting that each task may be better captured/modeled by a particular method. Our work calls attention to the attractive properties of the linear versions of the transformer architectures. In particular, we show that the best results are achieved by fusing the different architectures{’} preprocessing methods. However, they pose extreme conditions in computation power and energy consumption for real-time computations for quadratic transformers due to their memory requirements. In turn, linear transformers pave the way for quantifying small changes in sentiment estimation and personality perception for real-time social communications for machines and robots.  
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  Notes HuPBA; no menciona Approved no  
  Call Number Admin @ si @ FSJ2022 Serial 3769  
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Author German Barquero; Johnny Nuñez; Sergio Escalera; Zhen Xu; Wei-Wei Tu; Isabelle Guyon edit  url
openurl 
  Title Didn’t see that coming: a survey on non-verbal social human behavior forecasting Type Conference Article
  Year 2022 Publication Understanding Social Behavior in Dyadic and Small Group Interactions Abbreviated Journal  
  Volume 173 Issue Pages 139-178  
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  Abstract Non-verbal social human behavior forecasting has increasingly attracted the interest of the research community in recent years. Its direct applications to human-robot interaction and socially-aware human motion generation make it a very attractive field. In this survey, we define the behavior forecasting problem for multiple interactive agents in a generic way that aims at unifying the fields of social signals prediction and human motion forecasting, traditionally separated. We hold that both problem formulations refer to the same conceptual problem, and identify many shared fundamental challenges: future stochasticity, context awareness, history exploitation, etc. We also propose a taxonomy that comprises
methods published in the last 5 years in a very informative way and describes the current main concerns of the community with regard to this problem. In order to promote further research on this field, we also provide a summarized and friendly overview of audiovisual datasets featuring non-acted social interactions. Finally, we describe the most common metrics used in this task and their particular issues.
 
  Address Virtual; June 2022  
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  Notes HuPBA; no proj Approved no  
  Call Number Admin @ si @ BNE2022 Serial 3766  
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Author Meysam Madadi; Hugo Bertiche; Wafa Bouzouita; Isabelle Guyon; Sergio Escalera edit   pdf
url  openurl
  Title Learning Cloth Dynamics: 3D+Texture Garment Reconstruction Benchmark Type Conference Article
  Year 2021 Publication Proceedings of Machine Learning Research Abbreviated Journal  
  Volume 133 Issue Pages 57-76  
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  Abstract Human avatars are important targets in many computer applications. Accurately tracking, capturing, reconstructing and animating the human body, face and garments in 3D are critical for human-computer interaction, gaming, special effects and virtual reality. In the past, this has required extensive manual animation. Regardless of the advances in human body and face reconstruction, still modeling, learning and analyzing human dynamics need further attention. In this paper we plan to push the research in this direction, e.g. understanding human dynamics in 2D and 3D, with special attention to garments. We provide a large-scale dataset (more than 2M frames) of animated garments with variable topology and type, calledCLOTH3D++. The dataset contains RGBA video sequences paired with its corresponding 3D data. We pay special care to garment dynamics and realistic rendering of RGB data, including lighting, fabric type and texture. With this dataset, we hold a competition at NeurIPS2020. We design three tracks so participants can compete to develop the best method to perform 3D garment reconstruction in a sequence from (1) 3D-to-3D garments, (2) RGB-to-3D garments, and (3) RGB-to-3D garments plus texture. We also provide a baseline method, based on graph convolutional networks, for each track. Baseline results show that there is a lot of room for improvements. However, due to the challenging nature of the problem, no participant could outperform the baselines.  
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  Notes HUPBA; no proj Approved no  
  Call Number Admin @ si @ MBB2021 Serial 3655  
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Author Domicele Jonauskaite; Lucia Camenzind; C. Alejandro Parraga; Cecile N Diouf; Mathieu Mercapide Ducommun; Lauriane Müller; Melanie Norberg; Christine Mohr edit  url
doi  openurl
  Title Colour-emotion associations in individuals with red-green colour blindness Type Journal Article
  Year 2021 Publication PeerJ Abbreviated Journal  
  Volume 9 Issue Pages e11180  
  Keywords Affect; Chromotherapy; Colour cognition; Colour vision deficiency; Cross-modal correspondences; Daltonism; Deuteranopia; Dichromatic; Emotion; Protanopia.  
  Abstract Colours and emotions are associated in languages and traditions. Some of us may convey sadness by saying feeling blue or by wearing black clothes at funerals. The first example is a conceptual experience of colour and the second example is an immediate perceptual experience of colour. To investigate whether one or the other type of experience more strongly drives colour-emotion associations, we tested 64 congenitally red-green colour-blind men and 66 non-colour-blind men. All participants associated 12 colours, presented as terms or patches, with 20 emotion concepts, and rated intensities of the associated emotions. We found that colour-blind and non-colour-blind men associated similar emotions with colours, irrespective of whether colours were conveyed via terms (r = .82) or patches (r = .80). The colour-emotion associations and the emotion intensities were not modulated by participants' severity of colour blindness. Hinting at some additional, although minor, role of actual colour perception, the consistencies in associations for colour terms and patches were higher in non-colour-blind than colour-blind men. Together, these results suggest that colour-emotion associations in adults do not require immediate perceptual colour experiences, as conceptual experiences are sufficient.  
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  Notes CIC; LAMP; 600.120; 600.128 Approved no  
  Call Number Admin @ si @ JCP2021 Serial 3564  
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Author Bojana Gajic; Eduard Vazquez; Ramon Baldrich edit  url
openurl 
  Title Evaluation of Deep Image Descriptors for Texture Retrieval Type Conference Article
  Year 2017 Publication Proceedings of the 12th International Joint Conference on Computer Vision, Imaging and Computer Graphics Theory and Applications (VISIGRAPP 2017) Abbreviated Journal  
  Volume Issue Pages 251-257  
  Keywords Texture Representation; Texture Retrieval; Convolutional Neural Networks; Psychophysical Evaluation  
  Abstract The increasing complexity learnt in the layers of a Convolutional Neural Network has proven to be of great help for the task of classification. The topic has received great attention in recently published literature.
Nonetheless, just a handful of works study low-level representations, commonly associated with lower layers. In this paper, we explore recent findings which conclude, counterintuitively, the last layer of the VGG convolutional network is the best to describe a low-level property such as texture. To shed some light on this issue, we are proposing a psychophysical experiment to evaluate the adequacy of different layers of the VGG network for texture retrieval. Results obtained suggest that, whereas the last convolutional layer is a good choice for a specific task of classification, it might not be the best choice as a texture descriptor, showing a very poor performance on texture retrieval. Intermediate layers show the best performance, showing a good combination of basic filters, as in the primary visual cortex, and also a degree of higher level information to describe more complex textures.
 
  Address Porto, Portugal; 27 February – 1 March 2017  
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  Area Expedition Conference VISIGRAPP  
  Notes CIC; 600.087 Approved no  
  Call Number Admin @ si @ Serial 3710  
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Author Diego Velazquez; Pau Rodriguez; Alexandre Lacoste; Issam H. Laradji; Xavier Roca; Jordi Gonzalez edit  url
openurl 
  Title Evaluating Counterfactual Explainers Type Journal
  Year 2023 Publication Transactions on Machine Learning Research Abbreviated Journal TMLR  
  Volume Issue Pages  
  Keywords Explainability; Counterfactuals; XAI  
  Abstract Explainability methods have been widely used to provide insight into the decisions made by statistical models, thus facilitating their adoption in various domains within the industry. Counterfactual explanation methods aim to improve our understanding of a model by perturbing samples in a way that would alter its response in an unexpected manner. This information is helpful for users and for machine learning practitioners to understand and improve their models. Given the value provided by counterfactual explanations, there is a growing interest in the research community to investigate and propose new methods. However, we identify two issues that could hinder the progress in this field. (1) Existing metrics do not accurately reflect the value of an explainability method for the users. (2) Comparisons between methods are usually performed with datasets like CelebA, where images are annotated with attributes that do not fully describe them and with subjective attributes such as ``Attractive''. In this work, we address these problems by proposing an evaluation method with a principled metric to evaluate and compare different counterfactual explanation methods. The evaluation method is based on a synthetic dataset where images are fully described by their annotated attributes. As a result, we are able to perform a fair comparison of multiple explainability methods in the recent literature, obtaining insights about their performance. We make the code public for the benefit of the research community.  
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  Call Number Admin @ si @ VRL2023 Serial 3891  
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Author Hunor Laczko; Meysam Madadi; Sergio Escalera; Jordi Gonzalez edit   pdf
url  openurl
  Title A Generative Multi-Resolution Pyramid and Normal-Conditioning 3D Cloth Draping Type Conference Article
  Year 2024 Publication Winter Conference on Applications of Computer Vision Abbreviated Journal  
  Volume Issue Pages 8709-8718  
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  Abstract RGB cloth generation has been deeply studied in the related literature, however, 3D garment generation remains an open problem. In this paper, we build a conditional variational autoencoder for 3D garment generation and draping. We propose a pyramid network to add garment details progressively in a canonical space, i.e. unposing and unshaping the garments w.r.t. the body. We study conditioning the network on surface normal UV maps, as an intermediate representation, which is an easier problem to optimize than 3D coordinates. Our results on two public datasets, CLOTH3D and CAPE, show that our model is robust, controllable in terms of detail generation by the use of multi-resolution pyramids, and achieves state-of-the-art results that can highly generalize to unseen garments, poses, and shapes even when training with small amounts of data.  
  Address Waikoloa; Hawai; USA; January 2024  
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  Area Expedition Conference WACV  
  Notes ISE; HUPBA Approved no  
  Call Number Admin @ si @ LME2024 Serial 3996  
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