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Author Marc Bolaños; Alvaro Peris; Francisco Casacuberta; Petia Radeva
Title VIBIKNet: Visual Bidirectional Kernelized Network for Visual Question Answering Type Conference Article
Year 2017 Publication 8th Iberian Conference on Pattern Recognition and Image Analysis Abbreviated Journal
Volume Issue Pages
Keywords Visual Qestion Aswering; Convolutional Neural Networks; Long short-term memory networks
Abstract In this paper, we address the problem of visual question answering by proposing a novel model, called VIBIKNet. Our model is based on integrating Kernelized Convolutional Neural Networks and Long-Short Term Memory units to generate an answer given a question about an image. We prove that VIBIKNet is an optimal trade-off between accuracy and computational load, in terms of memory and time consumption. We validate our method on the VQA challenge dataset and compare it to the top performing methods in order to illustrate its performance and speed.
Address Faro; Portugal; June 2017
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Area Expedition Conference IbPRIA
Notes MILAB; no proj Approved no
Call Number Admin @ si @ BPC2017 Serial 2939
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Author David Vazquez; Jorge Bernal; F. Javier Sanchez; Gloria Fernandez Esparrach; Antonio Lopez; Adriana Romero; Michal Drozdzal; Aaron Courville
Title A Benchmark for Endoluminal Scene Segmentation of Colonoscopy Images Type Journal Article
Year 2017 Publication Journal of Healthcare Engineering Abbreviated Journal JHCE
Volume Issue Pages 2040-2295
Keywords Colonoscopy images; Deep Learning; Semantic Segmentation
Abstract Colorectal cancer (CRC) is the third cause of cancer death world-wide. Currently, the standard approach to reduce CRC-related mortality is to perform regular screening in search for polyps and colonoscopy is the screening tool of choice. The main limitations of this screening procedure are polyp miss- rate and inability to perform visual assessment of polyp malignancy. These drawbacks can be reduced by designing Decision Support Systems (DSS) aim- ing to help clinicians in the different stages of the procedure by providing endoluminal scene segmentation. Thus, in this paper, we introduce an extended benchmark of colonoscopy image segmentation, with the hope of establishing a new strong benchmark for colonoscopy image analysis research. The proposed dataset consists of 4 relevant classes to inspect the endolumninal scene, tar- geting different clinical needs. Together with the dataset and taking advantage of advances in semantic segmentation literature, we provide new baselines by training standard fully convolutional networks (FCN). We perform a compar- ative study to show that FCN significantly outperform, without any further post-processing, prior results in endoluminal scene segmentation, especially with respect to polyp segmentation and localization.
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Notes ADAS; MV; 600.075; 600.085; 600.076; 601.281; 600.118 Approved no
Call Number VBS2017b Serial 2940
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Author Carles Sanchez; Debora Gil; T. Gache; N. Koufos; Marta Diez-Ferrer; Antoni Rosell
Title SENSA: a System for Endoscopic Stenosis Assessment Type Conference Article
Year 2016 Publication 28th Conference of the international Society for Medical Innovation and Technology Abbreviated Journal
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Keywords
Abstract Documenting the severity of a static or dynamic Central Airway Obstruction (CAO) is crucial to establish proper diagnosis and treatment, predict possible treatment effects and better follow-up the patients. The subjective visual evaluation of a stenosis during video-bronchoscopy still remains the most common way to assess a CAO in spite of a consensus among experts for a need to standardize all calculations [1].
The Computer Vision Center in cooperation with the «Hospital de Bellvitge», has developed a System for Endoscopic Stenosis Assessment (SENSA), which computes CAO directly by analyzing standard bronchoscopic data without the need of using other imaging tecnologies.
Address Rotterdam; The Netherlands; October 2016
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Area Expedition Conference SMIT
Notes IAM; Approved no
Call Number Admin @ si @ SGG2016 Serial 2942
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Author Carles Sanchez; Antonio Esteban Lansaque; Agnes Borras; Marta Diez-Ferrer; Antoni Rosell; Debora Gil
Title Towards a Videobronchoscopy Localization System from Airway Centre Tracking Type Conference Article
Year 2017 Publication 12th International Conference on Computer Vision Theory and Applications Abbreviated Journal
Volume Issue Pages 352-359
Keywords Video-bronchoscopy; Lung cancer diagnosis; Airway lumen detection; Region tracking; Guided bronchoscopy navigation
Abstract Bronchoscopists use fluoroscopy to guide flexible bronchoscopy to the lesion to be biopsied without any kind of incision. Being fluoroscopy an imaging technique based on X-rays, the risk of developmental problems and cancer is increased in those subjects exposed to its application, so minimizing radiation is crucial. Alternative guiding systems such as electromagnetic navigation require specific equipment, increase the cost of the clinical procedure and still require fluoroscopy. In this paper we propose an image based guiding system based on the extraction of airway centres from intra-operative videos. Such anatomical landmarks are matched to the airway centreline extracted from a pre-planned CT to indicate the best path to the nodule. We present a
feasibility study of our navigation system using simulated bronchoscopic videos and a multi-expert validation of landmarks extraction in 3 intra-operative ultrathin explorations.
Address Porto; Portugal; February 2017
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Area Expedition Conference VISAPP
Notes IAM; 600.096; 600.075; 600.145 Approved no
Call Number Admin @ si @ SEB2017 Serial 2943
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Author Marta Diez-Ferrer; Debora Gil; Elena Carreño; Susana Padrones; Samantha Aso; Vanesa Vicens; Noelia Cubero de Frutos; Rosa Lopez Lisbona; Carles Sanchez; Agnes Borras; Antoni Rosell
Title Positive Airway Pressure-Enhanced CT to Improve Virtual Bronchoscopic Navigation Type Journal Article
Year 2017 Publication European Respiratory Journal Abbreviated Journal ERJ
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Notes IAM Approved no
Call Number Admin @ si @ DGC2017b Serial 3632
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Author Thanh Ha Do; Salvatore Tabbone; Oriol Ramos Terrades
Title Sparse representation over learned dictionary for symbol recognition Type Journal Article
Year 2016 Publication Signal Processing Abbreviated Journal SP
Volume 125 Issue Pages 36-47
Keywords Symbol Recognition; Sparse Representation; Learned Dictionary; Shape Context; Interest Points
Abstract In this paper we propose an original sparse vector model for symbol retrieval task. More speci cally, we apply the K-SVD algorithm for learning a visual dictionary based on symbol descriptors locally computed around interest points. Results on benchmark datasets show that the obtained sparse representation is competitive related to state-of-the-art methods. Moreover, our sparse representation is invariant to rotation and scale transforms and also robust to degraded images and distorted symbols. Thereby, the learned visual dictionary is able to represent instances of unseen classes of symbols.
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Notes DAG; 600.061; 600.077 Approved no
Call Number Admin @ si @ DTR2016 Serial 2946
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Author Quentin Angermann; Jorge Bernal; Cristina Sanchez Montes; Maroua Hammami; Gloria Fernandez Esparrach; Xavier Dray; Olivier Romain; F. Javier Sanchez; Aymeric Histace
Title Real-Time Polyp Detection in Colonoscopy Videos: A Preliminary Study For Adapting Still Frame-based Methodology To Video Sequences Analysis Type Conference Article
Year 2017 Publication 31st International Congress and Exhibition on Computer Assisted Radiology and Surgery Abbreviated Journal
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Abstract
Address Barcelona; Spain; June 2017
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Area Expedition Conference CARS
Notes MV; no menciona Approved no
Call Number Admin @ si @ ABS2017 Serial 2947
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Author Jorge Bernal; Nima Tajkbaksh; F. Javier Sanchez; Bogdan J. Matuszewski; Hao Chen; Lequan Yu; Quentin Angermann; Olivier Romain; Bjorn Rustad; Ilangko Balasingham; Konstantin Pogorelov; Sungbin Choi; Quentin Debard; Lena Maier Hein; Stefanie Speidel; Danail Stoyanov; Patrick Brandao; Henry Cordova; Cristina Sanchez Montes; Suryakanth R. Gurudu; Gloria Fernandez Esparrach; Xavier Dray; Jianming Liang; Aymeric Histace
Title Comparative Validation of Polyp Detection Methods in Video Colonoscopy: Results from the MICCAI 2015 Endoscopic Vision Challenge Type Journal Article
Year 2017 Publication IEEE Transactions on Medical Imaging Abbreviated Journal TMI
Volume 36 Issue 6 Pages 1231 - 1249
Keywords Endoscopic vision; Polyp Detection; Handcrafted features; Machine Learning; Validation Framework
Abstract Colonoscopy is the gold standard for colon cancer screening though still some polyps are missed, thus preventing early disease detection and treatment. Several computational systems have been proposed to assist polyp detection during colonoscopy but so far without consistent evaluation. The lack
of publicly available annotated databases has made it difficult to compare methods and to assess if they achieve performance levels acceptable for clinical use. The Automatic Polyp Detection subchallenge, conducted as part of the Endoscopic Vision Challenge (http://endovis.grand-challenge.org) at the international conference on Medical Image Computing and Computer Assisted
Intervention (MICCAI) in 2015, was an effort to address this need. In this paper, we report the results of this comparative evaluation of polyp detection methods, as well as describe additional experiments to further explore differences between methods. We define performance metrics and provide evaluation databases that allow comparison of multiple methodologies. Results show that convolutional neural networks (CNNs) are the state of the art. Nevertheless it is also demonstrated that combining different methodologies can lead to an improved overall performance.
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Notes MV; 600.096; 600.075 Approved no
Call Number Admin @ si @ BTS2017 Serial 2949
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Author Hana Jarraya; Oriol Ramos Terrades; Josep Llados
Title Graph Embedding through Probabilistic Graphical Model applied to Symbolic Graphs Type Conference Article
Year 2017 Publication 8th Iberian Conference on Pattern Recognition and Image Analysis Abbreviated Journal
Volume Issue Pages
Keywords Attributed Graph; Probabilistic Graphical Model; Graph Embedding; Structured Support Vector Machines
Abstract We propose a new Graph Embedding (GEM) method that takes advantages of structural pattern representation. It models an Attributed Graph (AG) as a Probabilistic Graphical Model (PGM). Then, it learns the parameters of this PGM presented by a vector. This vector is a signature of AG in a lower dimensional vectorial space. We apply Structured Support Vector Machines (SSVM) to process classification task. As first tentative, results on the GREC dataset are encouraging enough to go further on this direction.
Address Faro; Portugal; June 2017
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Area Expedition Conference IbPRIA
Notes DAG; 600.097; 600.121 Approved no
Call Number Admin @ si @ JRL2017a Serial 2953
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Author Lasse Martensson; Anders Hast; Alicia Fornes
Title Word Spotting as a Tool for Scribal Attribution Type Conference Article
Year 2017 Publication 2nd Conference of the association of Digital Humanities in the Nordic Countries Abbreviated Journal
Volume Issue Pages 87-89
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Abstract
Address Gothenburg; Suecia; March 2017
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ISSN ISBN 978-91-88348-83-8 Medium
Area Expedition Conference DHN
Notes DAG; 600.097; 600.121 Approved no
Call Number Admin @ si @ MHF2017 Serial 2954
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Author Pau Riba; Alicia Fornes; Josep Llados
Title Towards the Alignment of Handwritten Music Scores Type Book Chapter
Year 2017 Publication International Workshop on Graphics Recognition. GREC 2015.Graphic Recognition. Current Trends and Challenges Abbreviated Journal
Volume 9657 Issue Pages 103-116
Keywords Optical Music Recognition; Handwritten Music Scores; Dynamic Time Warping alignment
Abstract It is very common to nd di erent versions of the same music work in archives of Opera Theaters. These di erences correspond to modi cations and annotations from the musicians. From the musicologist point of view, these variations are very interesting and deserve study.
This paper explores the alignment of music scores as a tool for automatically detecting the passages that contain such di erences. Given the diculties in the recognition of handwritten music scores, our goal is to align the music scores and at the same time, avoid the recognition of music elements as much as possible. After removing the sta lines, braces and ties, the bar lines are detected. Then, the bar units are described as a whole using the Blurred Shape Model. The bar units alignment is performed by using Dynamic Time Warping. The analysis of the alignment path is used to detect the variations in the music scores. The method has been evaluated on a subset of the CVC-MUSCIMA dataset, showing encouraging results.
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Publisher Place of Publication Editor Bart Lamiroy; R Dueire Lins
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title LNCS
Series Volume Series Issue Edition
ISSN ISBN 978-3-319-52158-9 Medium
Area Expedition Conference
Notes DAG; 600.097; 602.006; 600.121 Approved no
Call Number Admin @ si @ RFL2017 Serial 2955
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Author Thanh Ha Do; Salvatore Tabbone; Oriol Ramos Terrades
Title Spotting Symbol over Graphical Documents Via Sparsity in Visual Vocabulary Type Book Chapter
Year 2016 Publication Recent Trends in Image Processing and Pattern Recognition Abbreviated Journal
Volume 709 Issue Pages
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Area Expedition Conference RTIP2R
Notes DAG Approved no
Call Number Admin @ si @ HTR2016 Serial 2956
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Author Joan Serrat; Felipe Lumbreras; Francisco Blanco; Manuel Valiente; Montserrat Lopez-Mesas
Title myStone: A system for automatic kidney stone classification Type Journal Article
Year 2017 Publication Expert Systems with Applications Abbreviated Journal ESA
Volume 89 Issue Pages 41-51
Keywords Kidney stone; Optical device; Computer vision; Image classification
Abstract Kidney stone formation is a common disease and the incidence rate is constantly increasing worldwide. It has been shown that the classification of kidney stones can lead to an important reduction of the recurrence rate. The classification of kidney stones by human experts on the basis of certain visual color and texture features is one of the most employed techniques. However, the knowledge of how to analyze kidney stones is not widespread, and the experts learn only after being trained on a large number of samples of the different classes. In this paper we describe a new device specifically designed for capturing images of expelled kidney stones, and a method to learn and apply the experts knowledge with regard to their classification. We show that with off the shelf components, a carefully selected set of features and a state of the art classifier it is possible to automate this difficult task to a good degree. We report results on a collection of 454 kidney stones, achieving an overall accuracy of 63% for a set of eight classes covering almost all of the kidney stones taxonomy. Moreover, for more than 80% of samples the real class is the first or the second most probable class according to the system, being then the patient recommendations for the two top classes similar. This is the first attempt towards the automatic visual classification of kidney stones, and based on the current results we foresee better accuracies with the increase of the dataset size.
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Notes ADAS; MSIAU; 603.046; 600.122; 600.118 Approved no
Call Number Admin @ si @ SLB2017 Serial 3026
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Author Debora Gil; Oriol Ramos Terrades; Elisa Minchole; Carles Sanchez; Noelia Cubero de Frutos; Marta Diez-Ferrer; Rosa Maria Ortiz; Antoni Rosell
Title Classification of Confocal Endomicroscopy Patterns for Diagnosis of Lung Cancer Type Conference Article
Year 2017 Publication 6th Workshop on Clinical Image-based Procedures: Translational Research in Medical Imaging Abbreviated Journal
Volume 10550 Issue Pages 151-159
Keywords
Abstract Confocal Laser Endomicroscopy (CLE) is an emerging imaging technique that allows the in-vivo acquisition of cell patterns of potentially malignant lesions. Such patterns could discriminate between inflammatory and neoplastic lesions and, thus, serve as a first in-vivo biopsy to discard cases that do not actually require a cell biopsy.

The goal of this work is to explore whether CLE images obtained during videobronchoscopy contain enough visual information to discriminate between benign and malign peripheral lesions for lung cancer diagnosis. To do so, we have performed a pilot comparative study with 12 patients (6 adenocarcinoma and 6 benign-inflammatory) using 2 different methods for CLE pattern analysis: visual analysis by 3 experts and a novel methodology that uses graph methods to find patterns in pre-trained feature spaces. Our preliminary results indicate that although visual analysis can only achieve a 60.2% of accuracy, the accuracy of the proposed unsupervised image pattern classification raises to 84.6%.

We conclude that CLE images visual information allow in-vivo detection of neoplastic lesions and graph structural analysis applied to deep-learning feature spaces can achieve competitive results.
Address Quebec; Canada; September 2017
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Series Editor Series Title Abbreviated Series Title LNCS
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Area Expedition Conference CLIP
Notes IAM; 600.096; 600.075; 600.145 Approved no
Call Number Admin @ si @ GRM2017 Serial 2957
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Author Mireia Sole; Joan Blanco; Debora Gil; G. Fonseka; Richard Frodsham; Oliver Valero; Francesca Vidal; Zaida Sarrate
Title Is there a pattern of Chromosome territoriality along mice spermatogenesis? Type Conference Article
Year 2017 Publication 3rd Spanish MeioNet Meeting Abstract Book Abbreviated Journal
Volume Issue Pages 55-56
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Abstract
Address Miraflores de la Sierra; Madrid; June 2017
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Area Expedition Conference MEIONET
Notes IAM; 600.096; 600.145 Approved no
Call Number Admin @ si @ Serial 2958
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