Thanh Ha Do, Salvatore Tabbone, & Oriol Ramos Terrades. (2016). Sparse representation over learned dictionary for symbol recognition. SP - Signal Processing, 125, 36–47.
Abstract: In this paper we propose an original sparse vector model for symbol retrieval task. More speci cally, we apply the K-SVD algorithm for learning a visual dictionary based on symbol descriptors locally computed around interest points. Results on benchmark datasets show that the obtained sparse representation is competitive related to state-of-the-art methods. Moreover, our sparse representation is invariant to rotation and scale transforms and also robust to degraded images and distorted symbols. Thereby, the learned visual dictionary is able to represent instances of unseen classes of symbols.
Keywords: Symbol Recognition; Sparse Representation; Learned Dictionary; Shape Context; Interest Points
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Quentin Angermann, Jorge Bernal, Cristina Sanchez Montes, Maroua Hammami, Gloria Fernandez Esparrach, Xavier Dray, et al. (2017). Real-Time Polyp Detection in Colonoscopy Videos: A Preliminary Study For Adapting Still Frame-based Methodology To Video Sequences Analysis. In 31st International Congress and Exhibition on Computer Assisted Radiology and Surgery.
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Jorge Bernal, Nima Tajkbaksh, F. Javier Sanchez, Bogdan J. Matuszewski, Hao Chen, Lequan Yu, et al. (2017). Comparative Validation of Polyp Detection Methods in Video Colonoscopy: Results from the MICCAI 2015 Endoscopic Vision Challenge. TMI - IEEE Transactions on Medical Imaging, 36(6), 1231–1249.
Abstract: Colonoscopy is the gold standard for colon cancer screening though still some polyps are missed, thus preventing early disease detection and treatment. Several computational systems have been proposed to assist polyp detection during colonoscopy but so far without consistent evaluation. The lack
of publicly available annotated databases has made it difficult to compare methods and to assess if they achieve performance levels acceptable for clinical use. The Automatic Polyp Detection subchallenge, conducted as part of the Endoscopic Vision Challenge (http://endovis.grand-challenge.org) at the international conference on Medical Image Computing and Computer Assisted
Intervention (MICCAI) in 2015, was an effort to address this need. In this paper, we report the results of this comparative evaluation of polyp detection methods, as well as describe additional experiments to further explore differences between methods. We define performance metrics and provide evaluation databases that allow comparison of multiple methodologies. Results show that convolutional neural networks (CNNs) are the state of the art. Nevertheless it is also demonstrated that combining different methodologies can lead to an improved overall performance.
Keywords: Endoscopic vision; Polyp Detection; Handcrafted features; Machine Learning; Validation Framework
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Hana Jarraya, Oriol Ramos Terrades, & Josep Llados. (2017). Graph Embedding through Probabilistic Graphical Model applied to Symbolic Graphs. In 8th Iberian Conference on Pattern Recognition and Image Analysis.
Abstract: We propose a new Graph Embedding (GEM) method that takes advantages of structural pattern representation. It models an Attributed Graph (AG) as a Probabilistic Graphical Model (PGM). Then, it learns the parameters of this PGM presented by a vector. This vector is a signature of AG in a lower dimensional vectorial space. We apply Structured Support Vector Machines (SSVM) to process classification task. As first tentative, results on the GREC dataset are encouraging enough to go further on this direction.
Keywords: Attributed Graph; Probabilistic Graphical Model; Graph Embedding; Structured Support Vector Machines
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Lasse Martensson, Anders Hast, & Alicia Fornes. (2017). Word Spotting as a Tool for Scribal Attribution. In 2nd Conference of the association of Digital Humanities in the Nordic Countries (pp. 87–89).
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Pau Riba, Alicia Fornes, & Josep Llados. (2017). Towards the Alignment of Handwritten Music Scores. In Bart Lamiroy, & R Dueire Lins (Eds.), International Workshop on Graphics Recognition. GREC 2015.Graphic Recognition. Current Trends and Challenges (Vol. 9657, pp. 103–116). LNCS.
Abstract: It is very common to nd di erent versions of the same music work in archives of Opera Theaters. These di erences correspond to modi cations and annotations from the musicians. From the musicologist point of view, these variations are very interesting and deserve study.
This paper explores the alignment of music scores as a tool for automatically detecting the passages that contain such di erences. Given the diculties in the recognition of handwritten music scores, our goal is to align the music scores and at the same time, avoid the recognition of music elements as much as possible. After removing the sta lines, braces and ties, the bar lines are detected. Then, the bar units are described as a whole using the Blurred Shape Model. The bar units alignment is performed by using Dynamic Time Warping. The analysis of the alignment path is used to detect the variations in the music scores. The method has been evaluated on a subset of the CVC-MUSCIMA dataset, showing encouraging results.
Keywords: Optical Music Recognition; Handwritten Music Scores; Dynamic Time Warping alignment
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Thanh Ha Do, Salvatore Tabbone, & Oriol Ramos Terrades. (2016). Spotting Symbol over Graphical Documents Via Sparsity in Visual Vocabulary. In Recent Trends in Image Processing and Pattern Recognition (Vol. 709).
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Joan Serrat, Felipe Lumbreras, Francisco Blanco, Manuel Valiente, & Montserrat Lopez-Mesas. (2017). myStone: A system for automatic kidney stone classification. ESA - Expert Systems with Applications, 89, 41–51.
Abstract: Kidney stone formation is a common disease and the incidence rate is constantly increasing worldwide. It has been shown that the classification of kidney stones can lead to an important reduction of the recurrence rate. The classification of kidney stones by human experts on the basis of certain visual color and texture features is one of the most employed techniques. However, the knowledge of how to analyze kidney stones is not widespread, and the experts learn only after being trained on a large number of samples of the different classes. In this paper we describe a new device specifically designed for capturing images of expelled kidney stones, and a method to learn and apply the experts knowledge with regard to their classification. We show that with off the shelf components, a carefully selected set of features and a state of the art classifier it is possible to automate this difficult task to a good degree. We report results on a collection of 454 kidney stones, achieving an overall accuracy of 63% for a set of eight classes covering almost all of the kidney stones taxonomy. Moreover, for more than 80% of samples the real class is the first or the second most probable class according to the system, being then the patient recommendations for the two top classes similar. This is the first attempt towards the automatic visual classification of kidney stones, and based on the current results we foresee better accuracies with the increase of the dataset size.
Keywords: Kidney stone; Optical device; Computer vision; Image classification
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Debora Gil, Oriol Ramos Terrades, Elisa Minchole, Carles Sanchez, Noelia Cubero de Frutos, Marta Diez-Ferrer, et al. (2017). Classification of Confocal Endomicroscopy Patterns for Diagnosis of Lung Cancer. In 6th Workshop on Clinical Image-based Procedures: Translational Research in Medical Imaging (Vol. 10550, pp. 151–159). LNCS.
Abstract: Confocal Laser Endomicroscopy (CLE) is an emerging imaging technique that allows the in-vivo acquisition of cell patterns of potentially malignant lesions. Such patterns could discriminate between inflammatory and neoplastic lesions and, thus, serve as a first in-vivo biopsy to discard cases that do not actually require a cell biopsy.
The goal of this work is to explore whether CLE images obtained during videobronchoscopy contain enough visual information to discriminate between benign and malign peripheral lesions for lung cancer diagnosis. To do so, we have performed a pilot comparative study with 12 patients (6 adenocarcinoma and 6 benign-inflammatory) using 2 different methods for CLE pattern analysis: visual analysis by 3 experts and a novel methodology that uses graph methods to find patterns in pre-trained feature spaces. Our preliminary results indicate that although visual analysis can only achieve a 60.2% of accuracy, the accuracy of the proposed unsupervised image pattern classification raises to 84.6%.
We conclude that CLE images visual information allow in-vivo detection of neoplastic lesions and graph structural analysis applied to deep-learning feature spaces can achieve competitive results.
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Mireia Sole, Joan Blanco, Debora Gil, G. Fonseka, Richard Frodsham, Oliver Valero, et al. (2017). Is there a pattern of Chromosome territoriality along mice spermatogenesis? In 3rd Spanish MeioNet Meeting Abstract Book (pp. 55–56).
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Mireia Sole, Joan Blanco, Debora Gil, G. Fonseka, Richard Frodsham, Oliver Valero, et al. (2017). Unraveling the enigmas of chromosome territoriality during spermatogenesis. In IX Jornada del Departament de Biologia Cel•lular, Fisiologia i Immunologia.
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Pau Rodriguez, Guillem Cucurull, Josep M. Gonfaus, Xavier Roca, & Jordi Gonzalez. (2017). Age and gender recognition in the wild with deep attention. PR - Pattern Recognition, 72, 563–571.
Abstract: Face analysis in images in the wild still pose a challenge for automatic age and gender recognition tasks, mainly due to their high variability in resolution, deformation, and occlusion. Although the performance has highly increased thanks to Convolutional Neural Networks (CNNs), it is still far from optimal when compared to other image recognition tasks, mainly because of the high sensitiveness of CNNs to facial variations. In this paper, inspired by biology and the recent success of attention mechanisms on visual question answering and fine-grained recognition, we propose a novel feedforward attention mechanism that is able to discover the most informative and reliable parts of a given face for improving age and gender classification. In particular, given a downsampled facial image, the proposed model is trained based on a novel end-to-end learning framework to extract the most discriminative patches from the original high-resolution image. Experimental validation on the standard Adience, Images of Groups, and MORPH II benchmarks show that including attention mechanisms enhances the performance of CNNs in terms of robustness and accuracy.
Keywords: Age recognition; Gender recognition; Deep neural networks; Attention mechanisms
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Sergio Escalera, Jordi Gonzalez, Hugo Jair Escalante, Xavier Baro, & Isabelle Guyon. (2018). Looking at People Special Issue. IJCV - International Journal of Computer Vision, 126(2-4), 141–143.
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Mireia Sole, Joan Blanco, Debora Gil, G. Fonseka, Richard Frodsham, Francesca Vidal, et al. (2017). Noves perspectives en l estudi de la territorialitat cromosomica de cel·lules germinals masculines: estudis tridimensionals. JBR - Biologia de la Reproduccio, 73–78.
Abstract: In somatic cells, chromosomes occupy specific nuclear regions called chromosome territories which are involved in the
maintenance and regulation of the genome. Preliminary data in male germ cells also suggest the importance of chromosome
territoriality in cell functionality. Nevertheless, the specific characteristics of testicular tissue (presence of different
cell types with different morphological characteristics, in different stages of development and with different ploidy)
makes difficult to achieve conclusive results. In this study we have developed a methodology to approach the threedimensional
study of all chromosome territories in male germ cells from C57BL/6J mice (Mus musculus). The method
includes the following steps: i) Optimized cell fixation to obtain an optimal preservation of the three-dimensionality cell
morphology, ii) Chromosome identification by FISH (Chromoprobe Multiprobe® OctoChrome™ Murine System; Cytocell)
and confocal microscopy (TCS-SP5, Leica Microsystems), iii) Cell type identification by immunofluorescence
iv) Image analysis using Matlab scripts, v) Numerical data extraction related to chromosome features, chromosome
radial position and chromosome relative position. This methodology allows the unequivocally identification and the
analysis of the chromosome territories of all spermatogenic stages. Results will provide information about the features
that determine chromosomal position, preferred associations between chromosomes, and the relationship between chromosome
positioning and genome regulation.
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Xinhang Song, Shuqiang Jiang, & Luis Herranz. (2017). Multi-Scale Multi-Feature Context Modeling for Scene Recognition in the Semantic Manifold. TIP - IEEE Transactions on Image Processing, 26(6), 2721–2735.
Abstract: Before the big data era, scene recognition was often approached with two-step inference using localized intermediate representations (objects, topics, and so on). One of such approaches is the semantic manifold (SM), in which patches and images are modeled as points in a semantic probability simplex. Patch models are learned resorting to weak supervision via image labels, which leads to the problem of scene categories co-occurring in this semantic space. Fortunately, each category has its own co-occurrence patterns that are consistent across the images in that category. Thus, discovering and modeling these patterns are critical to improve the recognition performance in this representation. Since the emergence of large data sets, such as ImageNet and Places, these approaches have been relegated in favor of the much more powerful convolutional neural networks (CNNs), which can automatically learn multi-layered representations from the data. In this paper, we address many limitations of the original SM approach and related works. We propose discriminative patch representations using neural networks and further propose a hybrid architecture in which the semantic manifold is built on top of multiscale CNNs. Both representations can be computed significantly faster than the Gaussian mixture models of the original SM. To combine multiple scales, spatial relations, and multiple features, we formulate rich context models using Markov random fields. To solve the optimization problem, we analyze global and local approaches, where a top-down hierarchical algorithm has the best performance. Experimental results show that exploiting different types of contextual relations jointly consistently improves the recognition accuracy.
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