Abstract: Vision-based bronchoscopy (VB) models require the registration of the virtual lung model with the frames from the video bronchoscopy to provide effective guidance during the biopsy. The registration can be achieved by either tracking the position and orientation of the bronchoscopy camera or by calibrating its deviation from the pose (position and orientation) simulated in the virtual lung model. Recent advances in neural networks and temporal image processing have provided new opportunities for guided bronchoscopy. However, such progress has been hindered by the lack of comparative experimental conditions.
In the present paper, we share a novel synthetic dataset allowing for a fair comparison of methods. Moreover, this paper investigates several neural network architectures for the learning of temporal information at different levels of subject personalization. In order to improve orientation measurement, we also present a standardized comparison framework and a novel metric for camera orientation learning. Results on the dataset show that the proposed metric and architectures, as well as the standardized conditions, provide notable improvements to current state-of-the-art camera pose estimation in video bronchoscopy.

Abstract: Human vision is restricted to the visual-optical spectrum. Machine vision is not.
Cameras sensitive to diverse infrared spectral bands can improve the capacities of
autonomous systems and provide a comprehensive view. Relevant scene content
can be made visible, particularly in situations when sensors of other modalities,
such as a visual-optical camera, require a source of illumination. As a result, increasing the level of automation not only avoids human errors but also reduces
machine-induced errors. Furthermore, multi-spectral sensor systems with infrared
imagery as one modality are a rich source of information and can conceivably
increase the robustness of many autonomous systems. Robotics, automobiles,
biometrics, security, surveillance, and the military are some examples of fields
that can profit from the use of infrared imagery in their respective applications.
Although multimodal spectral sensors have come a long way, there are still several
bottlenecks that prevent us from combining their output information and using
them as comprehensive images. The primary issue with infrared imaging is the lack
of potential benefits due to their cost influence on sensor resolution, which grows
exponentially with greater resolution. Due to the more costly sensor technology
required for their development, their resolutions are substantially lower than thoseof regular digital cameras.
This thesis aims to improve beyond-visible-spectrum machine vision by integrating multi-modal spectral sensors. The emphasis is on transforming the produced images to enhance their resolution to match expected human perception, bring the color representation close to human understanding of natural color, and improve machine vision application performance. This research focuses mainly on two tasks, image Colorization and Image Super resolution for both single- and cross-domain problems. We first start with an extensive review of the state of the art in both tasks, point out the shortcomings of existing approaches, and then present our solutions to address their limitations. Our solutions demonstrate that low-cost channel information (i.e., visible image) can be used to improve expensive channel
information (i.e., infrared image), resulting in images with higher quality and closer to human perception at a lower cost than a high-cost infrared camera.

Abstract: The curse of data labeling is a costly bottleneck in supervised deep learning, where large amounts of labeled data are needed to train intelligent systems. In onboard perception for autonomous driving, this cost corresponds to the labeling of raw data from sensors such as cameras, LiDARs, RADARs, etc. Therefore, synthetic data with automatically generated ground truth (labels) has aroused as a reliable alternative for training onboard perception models.
However, synthetic data commonly suffers from synth-to-real domain shift, i.e., models trained on the synthetic domain do not show their achievable accuracy when performing in the real world. This shift needs to be addressed by techniques falling in the realm of domain adaptation (DA).
The semi-supervised learning (SSL) paradigm can be followed to address DA. In this case, a model is trained using source data with labels (here synthetic) and leverages minimal knowledge from target data (here the real world) to generate pseudo-labels. These pseudo-labels help the training process to reduce the gap between the source and the target domains. In general, we can assume accessing both, pseudo-labels and a few amounts of human-provided labels for the target-domain data. However, the most interesting and challenging setting consists in assuming that we do not have human-provided labels at all. This setting is known as unsupervised domain adaptation (UDA). This PhD focuses on applying SSL to the UDA setting, for onboard visual tasks related to autonomous driving. We start by addressing the synth-to-real UDA problem on onboard vision-based object detection (pedestrians and cars), a critical task for autonomous driving and driving assistance. In particular, we propose to apply an SSL technique known as co-training, which we adapt to work with deep models that process a multi-modal input. The multi-modality consists of the visual appearance of the images (RGB) and their monocular depth estimation. The synthetic data we use as the source domain contains both, object bounding boxes and depth information. This prior knowledge is the
starting point for the co-training technique, which iteratively labels unlabeled real-world data and uses such pseudolabels (here bounding boxes with an assigned object class) to progressively improve the labeling results. Along this
process, two models collaborate to automatically label the images, in a way that one model compensates for the errors of the other, so avoiding error drift. While this automatic labeling process is done offline, the resulting pseudolabels can be used to train object detection models that must perform in real-time onboard a vehicle. We show that multi-modal co-training improves the labeling results compared to single-modal co-training, remaining competitive compared to human labeling.
Given the success of co-training in the context of object detection, we have also adapted this technique to a more crucial and challenging visual task, namely, onboard semantic segmentation. In fact, providing labels for a single image
can take from 30 to 90 minutes for a human labeler, depending on the content of the image. Thus, developing automatic labeling techniques for this visual task is of great interest to the automotive industry. In particular, the new co-training framework addresses synth-to-real UDA by an initial stage of self-training. Intermediate models arising from this stage are used to start the co-training procedure, for which we have elaborated an accurate collaboration policy between the two models performing the automatic labeling. Moreover, our co-training seamlessly leverages datasets from different synthetic domains. In addition, the co-training procedure is agnostic to the loss function used to train the semantic segmentation models which perform the automatic labeling. We achieve state-of-the-art results on publicly available benchmark datasets, again, remaining competitive compared to human labeling.
Finally, on the ground of our previous experience, we have designed and implemented a new SSL technique for UDA in the context of visual semantic segmentation. In this case, we mimic the labeling methodology followed by human labelers. In particular, rather than labeling full images at a time, categories of semantic classes are defined and only those are labeled in a labeling pass. In fact, different human labelers can become specialists in labeling different categories. Afterward, these per-category-labeled layers are combined to provide fully labeled images. Our technique is inspired by this methodology since we perform synth-to-real UDA per category, using the self-training stage previously developed as part of our co-training framework. The pseudo-labels obtained for each category are finally
fused to obtain fully automatically labeled images. In this context, we have also contributed to the development of a new photo-realistic synthetic dataset based on path-tracing rendering. Our new SSL technique seamlessly leverages publicly available synthetic datasets as well as this new one to obtain state-of-the-art results on synth-to-real UDA for semantic segmentation. We show that the new dataset allows us to reach better labeling accuracy than previously existing datasets, at the same time that it complements well them when combined. Moreover, we also show that the new human-inspired SSL technique outperforms co-training.

Abstract: Though they achieve great success, deep neural networks typically require a huge
amount of labeled data for training. However, collecting labeled data is often laborious and expensive. It would, therefore, be ideal if the knowledge obtained from label-rich datasets could be transferred to unlabeled data. However, deep networks are weak at generalizing to unseen domains, even when the differences are only subtle between the datasets. In real-world situations, a typical factor impairing the model generalization ability is the distribution shift between data from different domains, which is a long-standing problem usually termed as (unsupervised) domain adaptation.
A crucial requirement in the methodology of these domain adaptation methods is that they require access to source domain data during the adaptation process to the target domain. Accessibility to the source data of a trained source model is often impossible in real-world applications, for example, when deploying domain adaptation algorithms on mobile devices where the computational capacity is limited or in situations where data privacy rules limit access to the source domain data. Without access to the source domain data, existing methods suffer from inferior performance. Thus, in this thesis, we investigate domain adaptation without source data (termed as source-free domain adaptation) in multiple different scenarios that focus on image classification tasks.
We first study the source-free domain adaptation problem in a closed-set setting,
where the label space of different domains is identical. Only accessing the pretrained source model, we propose to address source-free domain adaptation from the perspective of unsupervised clustering. We achieve this based on nearest neighborhood clustering. In this way, we can transfer the challenging source-free domain adaptation task to a type of clustering problem. The final optimization objective is an upper bound containing only two simple terms, which can be explained as discriminability and diversity. We show that this allows us to relate several other methods in domain adaptation, unsupervised clustering and contrastive learning via the perspective of discriminability and diversity.

Abstract: This thesis embarks on an exploratory journey into robustness in deep learning,
with a keen focus on the intertwining facets of generalization, explainability, and
edge cases within the realm of computer vision. In deep learning, robustness
epitomizes a model’s resilience and flexibility, grounded on its capacity to generalize across diverse data distributions, explain its predictions transparently, and navigate the intricacies of edge cases effectively. The challenges associated with robust generalization are multifaceted, encompassing the model’s performance on unseen data and its defense against out-of-distribution data and adversarial attacks. Bridging this gap, the potential of Embedding Propagation (EP) for improving out-of-distribution generalization is explored. EP is depicted as a powerful tool facilitating manifold smoothing, which in turn fortifies the model’s robustness against adversarial onslaughts and bolsters performance in few-shot and self-/semi-supervised learning scenarios. In the labyrinth of deep learning models, the path to robustness often intersects with explainability. As model complexity increases, so does the urgency to decipher their decision-making
processes. Acknowledging this, the thesis introduces a robust framework for
evaluating and comparing various counterfactual explanation methods, echoing
the imperative of explanation quality over quantity and spotlighting the intricacies of diversifying explanations. Simultaneously, the deep learning landscape is fraught with edge cases – anomalies in the form of small objects or rare instances in object detection tasks that defy the norm. Confronting this, the
thesis presents an extension of the DETR (DEtection TRansformer) model to enhance small object detection. The devised DETR-FP, embedding the Feature Pyramid technique, demonstrating improvement in small objects detection accuracy, albeit facing challenges like high computational costs. With emergence of foundation models in mind, the thesis unveils EarthView, the largest scale remote sensing dataset to date, built for the self-supervised learning of a robust foundational model for remote sensing. Collectively, these studies contribute to the grand narrative of robustness in deep learning, weaving together the strands of generalization, explainability, and edge case performance. Through these methodological advancements and novel datasets, the thesis calls for continued exploration, innovation, and refinement to fortify the bastion of robust computer vision.