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	Author	Mireia Forns-Nadal; Federico Sem; Anna Mane; Laura Igual; Dani Guinart; Oscar Vilarroya
	Title	Increased Nucleus Accumbens Volume in First-Episode Psychosis			Type	Journal Article
	Year	2017	Publication	Psychiatry Research-Neuroimaging	Abbreviated Journal	PRN
	Volume	263	Issue		Pages	57-60
	Keywords
	Abstract	Nucleus accumbens has been reported as a key structure in the neurobiology of schizophrenia. Studies analyzing structural abnormalities have shown conflicting results, possibly related to confounding factors. We investigated the nucleus accumbens volume using manual delimitation in first-episode psychosis (FEP) controlling for age, cannabis use and medication. Thirty-one FEP subjects who were naive or minimally exposed to antipsychotics and a control group were MRI scanned and clinically assessed from baseline to 6 months of follow-up. FEP showed increased relative and total accumbens volumes. Clinical correlations with negative symptoms, duration of untreated psychosis and cannabis use were not significant.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	MILAB; no menciona			Approved	no
	Call Number	Admin @ si @ FSM2017			Serial	3028
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	Author	A. Auge; Javier Varona; Juan J. Villanueva
	Title	Tumour Segmentation in Mammographies with Neural Networks. Application to Tumoural Volume Approximation.			Type	Journal Article
	Year	1997	Publication	Proceedings of the VII NSPRIA, Vol. II, CVC–UAB	Abbreviated Journal
	Volume		Issue		Pages
	Keywords
	Abstract
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes				Approved	no
	Call Number	ISE @ ise @ AVV1997			Serial	208
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	Author	M. Bressan; Jordi Vitria
	Title	Independent Component Analysis and Naïve Bayes Classification.			Type	Journal Article
	Year	2002	Publication	Proceedings of the Second IASTED International Conference Visualilzation, Imaging and Image Proceesing VIIP 2002: 496–501.	Abbreviated Journal
	Volume		Issue		Pages
	Keywords
	Abstract
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	OR;MV			Approved	no
	Call Number	BCNPCL @ bcnpcl @ BrV2002a			Serial	288
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	Author	Hannes Mueller; Andre Groeger; Jonathan Hersh; Andrea Matranga; Joan Serrat
	Title	Monitoring war destruction from space using machine learning			Type	Journal Article
	Year	2021	Publication	Proceedings of the National Academy of Sciences of the United States of America	Abbreviated Journal	PNAS
	Volume	118	Issue	23	Pages	e2025400118
	Keywords
	Abstract	Existing data on building destruction in conflict zones rely on eyewitness reports or manual detection, which makes it generally scarce, incomplete, and potentially biased. This lack of reliable data imposes severe limitations for media reporting, humanitarian relief efforts, human-rights monitoring, reconstruction initiatives, and academic studies of violent conflict. This article introduces an automated method of measuring destruction in high-resolution satellite images using deep-learning techniques combined with label augmentation and spatial and temporal smoothing, which exploit the underlying spatial and temporal structure of destruction. As a proof of concept, we apply this method to the Syrian civil war and reconstruct the evolution of damage in major cities across the country. Our approach allows generating destruction data with unprecedented scope, resolution, and frequency—and makes use of the ever-higher frequency at which satellite imagery becomes available.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	ADAS; 600.118			Approved	no
	Call Number	Admin @ si @ MGH2021			Serial	3584
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	Author	Stefan Ameling; Stephan Wirth; Dietrich Paulus; Gerard Lacey; Fernando Vilariño
	Title	Texture-based Polyp Detection in Colonoscopy			Type	Journal Article
	Year	2009	Publication	Proc. BILDVERARBEITUNG FÜR DIE MEDIZIN	Abbreviated Journal
	Volume		Issue		Pages
	Keywords
	Abstract
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area	800	Expedition		Conference
	Notes	MV;SIAI			Approved	no
	Call Number	fernando @ fernando @			Serial	2428
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	Author	Mario Rojas; David Masip; A. Todorov; Jordi Vitria
	Title	Automatic Prediction of Facial Trait Judgments: Appearance vs. Structural Models			Type	Journal Article
	Year	2011	Publication	PloS one	Abbreviated Journal	Plos
	Volume	6	Issue	8	Pages	e23323
	Keywords
	Abstract	JCR Impact Factor 2010: 4.411 Evaluating other individuals with respect to personality characteristics plays a crucial role in human relations and it is the focus of attention for research in diverse fields such as psychology and interactive computer systems. In psychology, face perception has been recognized as a key component of this evaluation system. Multiple studies suggest that observers use face information to infer personality characteristics. Interactive computer systems are trying to take advantage of these findings and apply them to increase the natural aspect of interaction and to improve the performance of interactive computer systems. Here, we experimentally test whether the automatic prediction of facial trait judgments (e.g. dominance) can be made by using the full appearance information of the face and whether a reduced representation of its structure is sufficient. We evaluate two separate approaches: a holistic representation model using the facial appearance information and a structural model constructed from the relations among facial salient points. State of the art machine learning methods are applied to a) derive a facial trait judgment model from training data and b) predict a facial trait value for any face. Furthermore, we address the issue of whether there are specific structural relations among facial points that predict perception of facial traits. Experimental results over a set of labeled data (9 different trait evaluations) and classification rules (4 rules) suggest that a) prediction of perception of facial traits is learnable by both holistic and structural approaches; b) the most reliable prediction of facial trait judgments is obtained by certain type of holistic descriptions of the face appearance; and c) for some traits such as attractiveness and extroversion, there are relationships between specific structural features and social perceptions
	Address
	Corporate Author				Thesis
	Publisher	Public Library of Science	Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	OR;MV			Approved	no
	Call Number	Admin @ si @ RMT2011			Serial	1883
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	Author	Olivier Penacchio; Xavier Otazu; Laura Dempere-Marco
	Title	A Neurodynamical Model of Brightness Induction in V1			Type	Journal Article
	Year	2013	Publication	PloS ONE	Abbreviated Journal	Plos
	Volume	8	Issue	5	Pages	e64086
	Keywords
	Abstract	Brightness induction is the modulation of the perceived intensity of an area by the luminance of surrounding areas. Recent neurophysiological evidence suggests that brightness information might be explicitly represented in V1, in contrast to the more common assumption that the striate cortex is an area mostly responsive to sensory information. Here we investigate possible neural mechanisms that offer a plausible explanation for such phenomenon. To this end, a neurodynamical model which is based on neurophysiological evidence and focuses on the part of V1 responsible for contextual influences is presented. The proposed computational model successfully accounts for well known psychophysical effects for static contexts and also for brightness induction in dynamic contexts defined by modulating the luminance of surrounding areas. This work suggests that intra-cortical interactions in V1 could, at least partially, explain brightness induction effects and reveals how a common general architecture may account for several different fundamental processes, such as visual saliency and brightness induction, which emerge early in the visual processing pathway.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	CIC			Approved	no
	Call Number	Admin @ si @ POD2013			Serial	2242
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	Author	David Masip; Michael S. North ; Alexander Todorov; Daniel N. Osherson
	Title	Automated Prediction of Preferences Using Facial Expressions			Type	Journal Article
	Year	2014	Publication	PloS one	Abbreviated Journal	Plos
	Volume	9	Issue	2	Pages	e87434
	Keywords
	Abstract	We introduce a computer vision problem from social cognition, namely, the automated detection of attitudes from a person's spontaneous facial expressions. To illustrate the challenges, we introduce two simple algorithms designed to predict observers’ preferences between images (e.g., of celebrities) based on covert videos of the observers’ faces. The two algorithms are almost as accurate as human judges performing the same task but nonetheless far from perfect. Our approach is to locate facial landmarks, then predict preference on the basis of their temporal dynamics. The database contains 768 videos involving four different kinds of preferences. We make it publically available.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	OR;MV			Approved	no
	Call Number	Admin @ si @ MNT2014			Serial	2453
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	Author	C. Alejandro Parraga; Arash Akbarinia
	Title	NICE: A Computational Solution to Close the Gap from Colour Perception to Colour Categorization			Type	Journal Article
	Year	2016	Publication	PLoS One	Abbreviated Journal	Plos
	Volume	11	Issue	3	Pages	e0149538
	Keywords
	Abstract	The segmentation of visible electromagnetic radiation into chromatic categories by the human visual system has been extensively studied from a perceptual point of view, resulting in several colour appearance models. However, there is currently a void when it comes to relate these results to the physiological mechanisms that are known to shape the pre-cortical and cortical visual pathway. This work intends to begin to fill this void by proposing a new physiologically plausible model of colour categorization based on Neural Isoresponsive Colour Ellipsoids (NICE) in the cone-contrast space defined by the main directions of the visual signals entering the visual cortex. The model was adjusted to fit psychophysical measures that concentrate on the categorical boundaries and are consistent with the ellipsoidal isoresponse surfaces of visual cortical neurons. By revealing the shape of such categorical colour regions, our measures allow for a more precise and parsimonious description, connecting well-known early visual processing mechanisms to the less understood phenomenon of colour categorization. To test the feasibility of our method we applied it to exemplary images and a popular ground-truth chart obtaining labelling results that are better than those of current state-of-the-art algorithms.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	NEUROBIT; 600.068			Approved	no
	Call Number	Admin @ si @ PaA2016a			Serial	2747
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	Author	Debora Gil; Carles Sanchez; Agnes Borras; Marta Diez-Ferrer; Antoni Rosell
	Title	Segmentation of Distal Airways using Structural Analysis			Type	Journal Article
	Year	2019	Publication	PloS one	Abbreviated Journal	Plos
	Volume	14	Issue	12	Pages
	Keywords
	Abstract	Segmentation of airways in Computed Tomography (CT) scans is a must for accurate support of diagnosis and intervention of many pulmonary disorders. In particular, lung cancer diagnosis would benefit from segmentations reaching most distal airways. We present a method that combines descriptors of bronchi local appearance and graph global structural analysis to fine-tune thresholds on the descriptors adapted for each bronchial level. We have compared our method to the top performers of the EXACT09 challenge and to a commercial software for biopsy planning evaluated in an own-collected data-base of high resolution CT scans acquired under different breathing conditions. Results on EXACT09 data show that our method provides a high leakage reduction with minimum loss in airway detection. Results on our data-base show the reliability across varying breathing conditions and a competitive performance for biopsy planning compared to a commercial solution.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	IAM; 600.139; 600.145			Approved	no
	Call Number	Admin @ si @ GSB2019			Serial	3357
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	Author	Penny Tarling; Mauricio Cantor; Albert Clapes; Sergio Escalera
	Title	Deep learning with self-supervision and uncertainty regularization to count fish in underwater images			Type	Journal Article
	Year	2022	Publication	PloS One	Abbreviated Journal	Plos
	Volume	17	Issue	5	Pages	e0267759
	Keywords
	Abstract	Effective conservation actions require effective population monitoring. However, accurately counting animals in the wild to inform conservation decision-making is difficult. Monitoring populations through image sampling has made data collection cheaper, wide-reaching and less intrusive but created a need to process and analyse this data efficiently. Counting animals from such data is challenging, particularly when densely packed in noisy images. Attempting this manually is slow and expensive, while traditional computer vision methods are limited in their generalisability. Deep learning is the state-of-the-art method for many computer vision tasks, but it has yet to be properly explored to count animals. To this end, we employ deep learning, with a density-based regression approach, to count fish in low-resolution sonar images. We introduce a large dataset of sonar videos, deployed to record wild Lebranche mullet schools (Mugil liza), with a subset of 500 labelled images. We utilise abundant unlabelled data in a self-supervised task to improve the supervised counting task. For the first time in this context, by introducing uncertainty quantification, we improve model training and provide an accompanying measure of prediction uncertainty for more informed biological decision-making. Finally, we demonstrate the generalisability of our proposed counting framework through testing it on a recent benchmark dataset of high-resolution annotated underwater images from varying habitats (DeepFish). From experiments on both contrasting datasets, we demonstrate our network outperforms the few other deep learning models implemented for solving this task. By providing an open-source framework along with training data, our study puts forth an efficient deep learning template for crowd counting aquatic animals thereby contributing effective methods to assess natural populations from the ever-increasing visual data.
	Address
	Corporate Author				Thesis
	Publisher	Public Library of Science	Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	HuPBA			Approved	no
	Call Number	Admin @ si @ TCC2022			Serial	3743
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	Author	A.S. Coquel; Jean-Pascal Jacob; M. Primet; A. Demarez; Mariella Dimiccoli; T. Julou; L. Moisan; A. Lindner; H. Berry
	Title	Localization of protein aggregation in Escherichia coli is governed by diffusion and nucleoid macromolecular crowding effect			Type	Journal Article
	Year	2013	Publication	Plos Computational Biology	Abbreviated Journal	PCB
	Volume	9	Issue	4	Pages
	Keywords
	Abstract	Aggregates of misfolded proteins are a hallmark of many age-related diseases. Recently, they have been linked to aging of Escherichia coli (E. coli) where protein aggregates accumulate at the old pole region of the aging bacterium. Because of the potential of E. coli as a model organism, elucidating aging and protein aggregation in this bacterium may pave the way to significant advances in our global understanding of aging. A first obstacle along this path is to decipher the mechanisms by which protein aggregates are targeted to specific intercellular locations. Here, using an integrated approach based on individual-based modeling, time-lapse fluorescence microscopy and automated image analysis, we show that the movement of aging-related protein aggregates in E. coli is purely diffusive (Brownian). Using single-particle tracking of protein aggregates in live E. coli cells, we estimated the average size and diffusion constant of the aggregates. Our results provide evidence that the aggregates passively diffuse within the cell, with diffusion constants that depend on their size in agreement with the Stokes-Einstein law. However, the aggregate displacements along the cell long axis are confined to a region that roughly corresponds to the nucleoid-free space in the cell pole, thus confirming the importance of increased macromolecular crowding in the nucleoids. We thus used 3D individual-based modeling to show that these three ingredients (diffusion, aggregation and diffusion hindrance in the nucleoids) are sufficient and necessary to reproduce the available experimental data on aggregate localization in the cells. Taken together, our results strongly support the hypothesis that the localization of aging-related protein aggregates in the poles of E. coli results from the coupling of passive diffusion-aggregation with spatially non-homogeneous macromolecular crowding. They further support the importance of “soft” intracellular structuring (based on macromolecular crowding) in diffusion-based protein localization in E. coli.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor	: Stanislav Shvartsman, Princeton University, United States of America
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes				Approved	no
	Call Number	Admin @ si @CJP2013			Serial	2786
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	Author	Simone Balocco; O. Basset; G. Courbebaisse; E. Boni; Alejandro F. Frangi; P. Tortoli; C. Cachard
	Title	Estimation Of Viscoelastic Properties Of Vessel Walls Using a Computational Model and Doppler Ultrasound			Type	Journal Article
	Year	2010	Publication	Physics in Medicine and Biology	Abbreviated Journal	PMB
	Volume	55	Issue	12	Pages	3557–3575
	Keywords
	Abstract	Human arteries affected by atherosclerosis are characterized by altered wall viscoelastic properties. The possibility of noninvasively assessing arterial viscoelasticity in vivo would significantly contribute to the early diagnosis and prevention of this disease. This paper presents a noniterative technique to estimate the viscoelastic parameters of a vascular wall Zener model. The approach requires the simultaneous measurement of flow variations and wall displacements, which can be provided by suitable ultrasound Doppler instruments. Viscoelastic parameters are estimated by fitting the theoretical constitutive equations to the experimental measurements using an ARMA parameter approach. The accuracy and sensitivity of the proposed method are tested using reference data generated by numerical simulations of arterial pulsation in which the physiological conditions and the viscoelastic parameters of the model can be suitably varied. The estimated values quantitatively agree with the reference values, showing that the only parameter affected by changing the physiological conditions is viscosity, whose relative error was about 27% even when a poor signal-to-noise ratio is simulated. Finally, the feasibility of the method is illustrated through three measurements made at different flow regimes on a cylindrical vessel phantom, yielding a parameter mean estimation error of 25%.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	MILAB			Approved	no
	Call Number	BCNPCL @ bcnpcl @ BBC2010			Serial	1312
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	Author	Pierluigi Casale; Oriol Pujol; Petia Radeva
	Title	Personalization and User Verification in Wearable Systems using Biometric Walking Patterns			Type	Journal Article
	Year	2012	Publication	Personal and Ubiquitous Computing	Abbreviated Journal	PUC
	Volume	16	Issue	5	Pages	563-580
	Keywords
	Abstract	In this article, a novel technique for user’s authentication and verification using gait as a biometric unobtrusive pattern is proposed. The method is based on a two stages pipeline. First, a general activity recognition classifier is personalized for an specific user using a small sample of her/his walking pattern. As a result, the system is much more selective with respect to the new walking pattern. A second stage verifies whether the user is an authorized one or not. This stage is defined as a one-class classification problem. In order to solve this problem, a four-layer architecture is built around the geometric concept of convex hull. This architecture allows to improve robustness to outliers, modeling non-convex shapes, and to take into account temporal coherence information. Two different scenarios are proposed as validation with two different wearable systems. First, a custom high-performance wearable system is built and used in a free environment. A second dataset is acquired from an Android-based commercial device in a ‘wild’ scenario with rough terrains, adversarial conditions, crowded places and obstacles. Results on both systems and datasets are very promising, reducing the verification error rates by an order of magnitude with respect to the state-of-the-art technologies.
	Address
	Corporate Author				Thesis
	Publisher	Springer-Verlag	Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN	1617-4909	ISBN		Medium
	Area		Expedition		Conference
	Notes	MILAB;HuPBA			Approved	no
	Call Number	Admin @ si @ CPR2012			Serial	1706
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	Author	C. Alejandro Parraga; Robert Benavente; Maria Vanrell
	Title	Towards a general model of colour categorization which considers context			Type	Journal Article
	Year	2010	Publication	Perception. ECVP Abstract Supplement	Abbreviated Journal	PER
	Volume	39	Issue		Pages	86
	Keywords
	Abstract	In two previous experiments [Parraga et al, 2009 J. of Im. Sci. and Tech 53(3) 031106; Benavente et al,2009 Perception 38 ECVP Supplement, 36] the boundaries of basic colour categories were measured. In the ﬁrst experiment, samples were presented in isolation (ie on a dark background) and boundaries were measured using a yes/no paradigm. In the second, subjects adjusted the chromaticity of a sample presented on a random Mondrian background to ﬁnd the boundary between pairs of adjacent colours. Results from these experiments showed signiﬁcant dierences but it was not possible to conclude whether this discrepancy was due to the absence/presence of a colourful background or to the dierences in the paradigms used. In this work, we settle this question by repeating the ﬁrst experiment (ie samples presented on a dark background) using the second paradigm. A comparison of results shows that although boundary locations are very similar, boundaries measured in context are signiﬁcantly dierent(more diuse) than those measured in isolation (conﬁrmed by a Student’s t-test analysis on the subject’s answers statistical distributions). In addition, we completed the mapping of colour name space by measuring the boundaries between chromatic colours and the achromatic centre. With these results we completed our parametric fuzzy-sets model of colour naming space.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	CIC			Approved	no
	Call Number	CAT @ cat @ PBV2010b			Serial	1326
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