Mireia Sole, Joan Blanco, Debora Gil, Oliver Valero, B. Cardenas, G. Fonseka, et al. (2022). Time to match; when do homologous chromosomes become closer? CHRO - Chromosoma, .
Abstract: In most eukaryotes, pairing of homologous chromosomes is an essential feature of meiosis that ensures homologous recombination and segregation. However, when the pairing process begins, it is still under investigation. Contrasting data exists in Mus musculus, since both leptotene DSB-dependent and preleptotene DSB-independent mechanisms have been described. To unravel this contention, we examined homologous pairing in pre-meiotic and meiotic Mus musculus cells using a threedimensional fuorescence in situ hybridization-based protocol, which enables the analysis of the entire karyotype using DNA painting probes. Our data establishes in an unambiguously manner that 73.83% of homologous chromosomes are already paired at premeiotic stages (spermatogonia-early preleptotene spermatocytes). The percentage of paired homologous chromosomes increases to 84.60% at mid-preleptotene-zygotene stage, reaching 100% at pachytene stage. Importantly, our results demonstrate a high percentage of homologous pairing observed before the onset of meiosis; this pairing does not occur randomly, as the percentage was higher than that observed in somatic cells (19.47%) and between nonhomologous chromosomes (41.1%). Finally, we have also observed that premeiotic homologous pairing is asynchronous and independent of the chromosome size, GC content, or presence of NOR regions.
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Michael Teutsch, Angel Sappa, & Riad I. Hammoud. (2022). Cross-Spectral Image Processing. In Computer Vision in the Infrared Spectrum. Synthesis Lectures on Computer Vision (pp. 23–34). SLCV. Springer.
Abstract: Although this book is on IR computer vision and its main focus lies on IR image and video processing and analysis, a special attention is dedicated to cross-spectral image processing due to the increasing number of publications and applications in this domain. In these cross-spectral frameworks, IR information is used together with information from other spectral bands to tackle some specific problems by developing more robust solutions. Tasks considered for cross-spectral processing are for instance dehazing, segmentation, vegetation index estimation, or face recognition. This increasing number of applications is motivated by cross- and multi-spectral camera setups available already on the market like for example smartphones, remote sensing multispectral cameras, or multi-spectral cameras for automotive systems or drones. In this chapter, different cross-spectral image processing techniques will be reviewed together with possible applications. Initially, image registration approaches for the cross-spectral case are reviewed: the registration stage is the first image processing task, which is needed to align images acquired by different sensors within the same reference coordinate system. Then, recent cross-spectral image colorization approaches, which are intended to colorize infrared images for different applications are presented. Finally, the cross-spectral image enhancement problem is tackled by including guided super resolution techniques, image dehazing approaches, cross-spectral filtering and edge detection. Figure 3.1 illustrates cross-spectral image processing stages as well as their possible connections. Table 3.1 presents some of the available public cross-spectral datasets generally used as reference data to evaluate cross-spectral image registration, colorization, enhancement, or exploitation results.
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Michael Teutsch, Angel Sappa, & Riad I. Hammoud. (2022). Detection, Classification, and Tracking. In Computer Vision in the Infrared Spectrum. Synthesis Lectures on Computer Vision (pp. 35–58). SLCV. Springer.
Abstract: Automatic image and video exploitation or content analysis is a technique to extract higher-level information from a scene such as objects, behavior, (inter-)actions, environment, or even weather conditions. The relevant information is assumed to be contained in the two-dimensional signal provided in an image (width and height in pixels) or the three-dimensional signal provided in a video (width, height, and time). But also intermediate-level information such as object classes [196], locations [197], or motion [198] can help applications to fulfill certain tasks such as intelligent compression [199], video summarization [200], or video retrieval [201]. Usually, videos with their temporal dimension are a richer source of data compared to single images [202] and thus certain video content can be extracted from videos only such as object motion or object behavior. Often, machine learning or nowadays deep learning techniques are utilized to model prior knowledge about object or scene appearance using labeled training samples [203, 204]. After a learning phase, these models are then applied in real world applications, which is called inference.
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Michael Teutsch, Angel Sappa, & Riad I. Hammoud. (2022). Image and Video Enhancement. In Computer Vision in the Infrared Spectrum. Synthesis Lectures on Computer Vision (pp. 9–21). SLCV. Springer.
Abstract: Image and video enhancement aims at improving the signal quality relative to imaging artifacts such as noise and blur or atmospheric perturbations such as turbulence and haze. It is usually performed in order to assist humans in analyzing image and video content or simply to present humans visually appealing images and videos. However, image and video enhancement can also be used as a preprocessing technique to ease the task and thus improve the performance of subsequent automatic image content analysis algorithms: preceding dehazing can improve object detection as shown by [23] or explicit turbulence modeling can improve moving object detection as discussed by [24]. But it remains an open question whether image and video enhancement should rather be performed explicitly as a preprocessing step or implicitly for example by feeding affected images directly to a neural network for image content analysis like object detection [25]. Especially for real-time video processing at low latency it can be better to handle image perturbation implicitly in order to minimize the processing time of an algorithm. This can be achieved by making algorithms for image content analysis robust or even invariant to perturbations such as noise or blur. Additionally, mistakes of an individual preprocessing module can obviously affect the quality of the entire processing pipeline.
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Eduardo Aguilar, Bhalaji Nagarajan, Beatriz Remeseiro, & Petia Radeva. (2022). Bayesian deep learning for semantic segmentation of food images. CEE - Computers and Electrical Engineering, 103, 108380.
Abstract: Deep learning has provided promising results in various applications; however, algorithms tend to be overconfident in their predictions, even though they may be entirely wrong. Particularly for critical applications, the model should provide answers only when it is very sure of them. This article presents a Bayesian version of two different state-of-the-art semantic segmentation methods to perform multi-class segmentation of foods and estimate the uncertainty about the given predictions. The proposed methods were evaluated on three public pixel-annotated food datasets. As a result, we can conclude that Bayesian methods improve the performance achieved by the baseline architectures and, in addition, provide information to improve decision-making. Furthermore, based on the extracted uncertainty map, we proposed three measures to rank the images according to the degree of noisy annotations they contained. Note that the top 135 images ranked by one of these measures include more than half of the worst-labeled food images.
Keywords: Deep learning; Uncertainty quantification; Bayesian inference; Image segmentation; Food analysis
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Zhaocheng Liu, Luis Herranz, Fei Yang, Saiping Zhang, Shuai Wan, Marta Mrak, et al. (2022). Slimmable Video Codec. In CVPR 2022 Workshop and Challenge on Learned Image Compression (CLIC 2022, 5th Edition) (pp. 1742–1746).
Abstract: Neural video compression has emerged as a novel paradigm combining trainable multilayer neural net-works and machine learning, achieving competitive rate-distortion (RD) performances, but still remaining impractical due to heavy neural architectures, with large memory and computational demands. In addition, models are usually optimized for a single RD tradeoff. Recent slimmable image codecs can dynamically adjust their model capacity to gracefully reduce the memory and computation requirements, without harming RD performance. In this paper we propose a slimmable video codec (SlimVC), by integrating a slimmable temporal entropy model in a slimmable autoencoder. Despite a significantly more complex architecture, we show that slimming remains a powerful mechanism to control rate, memory footprint, computational cost and latency, all being important requirements for practical video compression.
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Kai Wang, Xialei Liu, Andrew Bagdanov, Luis Herranz, Shangling Jui, & Joost Van de Weijer. (2022). Incremental Meta-Learning via Episodic Replay Distillation for Few-Shot Image Recognition. In CVPR 2022 Workshop on Continual Learning (CLVision, 3rd Edition) (pp. 3728–3738).
Abstract: In this paper we consider the problem of incremental meta-learning in which classes are presented incrementally in discrete tasks. We propose Episodic Replay Distillation (ERD), that mixes classes from the current task with exemplars from previous tasks when sampling episodes for meta-learning. To allow the training to benefit from a large as possible variety of classes, which leads to more gener-
alizable feature representations, we propose the cross-task meta loss. Furthermore, we propose episodic replay distillation that also exploits exemplars for improved knowledge distillation. Experiments on four datasets demonstrate that ERD surpasses the state-of-the-art. In particular, on the more challenging one-shot, long task sequence scenarios, we reduce the gap between Incremental Meta-Learning and
the joint-training upper bound from 3.5% / 10.1% / 13.4% / 11.7% with the current state-of-the-art to 2.6% / 2.9% / 5.0% / 0.2% with our method on Tiered-ImageNet / Mini-ImageNet / CIFAR100 / CUB, respectively.
Keywords: Training; Computer vision; Image recognition; Upper bound; Conferences; Pattern recognition; Task analysis
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Alex Gomez-Villa, Bartlomiej Twardowski, Lu Yu, Andrew Bagdanov, & Joost Van de Weijer. (2022). Continually Learning Self-Supervised Representations With Projected Functional Regularization. In CVPR 2022 Workshop on Continual Learning (CLVision, 3rd Edition) (pp. 3866–3876).
Abstract: Recent self-supervised learning methods are able to learn high-quality image representations and are closing the gap with supervised approaches. However, these methods are unable to acquire new knowledge incrementally – they are, in fact, mostly used only as a pre-training phase over IID data. In this work we investigate self-supervised methods in continual learning regimes without any replay
mechanism. We show that naive functional regularization,also known as feature distillation, leads to lower plasticity and limits continual learning performance. Instead, we propose Projected Functional Regularization in which a separate temporal projection network ensures that the newly learned feature space preserves information of the previous one, while at the same time allowing for the learning of new features. This prevents forgetting while maintaining the plasticity of the learner. Comparison with other incremental learning approaches applied to self-supervision demonstrates that our method obtains competitive performance in
different scenarios and on multiple datasets.
Keywords: Computer vision; Conferences; Self-supervised learning; Image representation; Pattern recognition
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Bojana Gajic, Ariel Amato, Ramon Baldrich, Joost Van de Weijer, & Carlo Gatta. (2022). Area Under the ROC Curve Maximization for Metric Learning. In CVPR 2022 Workshop on Efficien Deep Learning for Computer Vision (ECV 2022, 5th Edition).
Abstract: Most popular metric learning losses have no direct relation with the evaluation metrics that are subsequently applied to evaluate their performance. We hypothesize that training a metric learning model by maximizing the area under the ROC curve (which is a typical performance measure of recognition systems) can induce an implicit ranking suitable for retrieval problems. This hypothesis is supported by previous work that proved that a curve dominates in ROC space if and only if it dominates in Precision-Recall space. To test this hypothesis, we design and maximize an approximated, derivable relaxation of the area under the ROC curve. The proposed AUC loss achieves state-of-the-art results on two large scale retrieval benchmark datasets (Stanford Online Products and DeepFashion In-Shop). Moreover, the AUC loss achieves comparable performance to more complex, domain specific, state-of-the-art methods for vehicle re-identification.
Keywords: Training; Computer vision; Conferences; Area measurement; Benchmark testing; Pattern recognition
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Mohamed Ramzy Ibrahim, Robert Benavente, Felipe Lumbreras, & Daniel Ponsa. (2022). 3DRRDB: Super Resolution of Multiple Remote Sensing Images using 3D Residual in Residual Dense Blocks. In CVPR 2022 Workshop on IEEE Perception Beyond the Visible Spectrum workshop series (PBVS, 18th Edition).
Abstract: The rapid advancement of Deep Convolutional Neural Networks helped in solving many remote sensing problems, especially the problems of super-resolution. However, most state-of-the-art methods focus more on Single Image Super-Resolution neglecting Multi-Image Super-Resolution. In this work, a new proposed 3D Residual in Residual Dense Blocks model (3DRRDB) focuses on remote sensing Multi-Image Super-Resolution for two different single spectral bands. The proposed 3DRRDB model explores the idea of 3D convolution layers in deeply connected Dense Blocks and the effect of local and global residual connections with residual scaling in Multi-Image Super-Resolution. The model tested on the Proba-V challenge dataset shows a significant improvement above the current state-of-the-art models scoring a Corrected Peak Signal to Noise Ratio (cPSNR) of 48.79 dB and 50.83 dB for Near Infrared (NIR) and RED Bands respectively. Moreover, the proposed 3DRRDB model scores a Corrected Structural Similarity Index Measure (cSSIM) of 0.9865 and 0.9909 for NIR and RED bands respectively.
Keywords: Training; Solid modeling; Three-dimensional displays; PSNR; Convolution; Superresolution; Pattern recognition
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Adria Molina, Lluis Gomez, Oriol Ramos Terrades, & Josep Llados. (2022). A Generic Image Retrieval Method for Date Estimation of Historical Document Collections. In Document Analysis Systems.15th IAPR International Workshop, (DAS2022) (Vol. 13237, 583–597).
Abstract: Date estimation of historical document images is a challenging problem, with several contributions in the literature that lack of the ability to generalize from one dataset to others. This paper presents a robust date estimation system based in a retrieval approach that generalizes well in front of heterogeneous collections. We use a ranking loss function named smooth-nDCG to train a Convolutional Neural Network that learns an ordination of documents for each problem. One of the main usages of the presented approach is as a tool for historical contextual retrieval. It means that scholars could perform comparative analysis of historical images from big datasets in terms of the period where they were produced. We provide experimental evaluation on different types of documents from real datasets of manuscript and newspaper images.
Keywords: Date estimation; Document retrieval; Image retrieval; Ranking loss; Smooth-nDCG
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Josep Brugues Pujolras, Lluis Gomez, & Dimosthenis Karatzas. (2022). A Multilingual Approach to Scene Text Visual Question Answering. In Document Analysis Systems.15th IAPR International Workshop, (DAS2022) (pp. 65–79).
Abstract: Scene Text Visual Question Answering (ST-VQA) has recently emerged as a hot research topic in Computer Vision. Current ST-VQA models have a big potential for many types of applications but lack the ability to perform well on more than one language at a time due to the lack of multilingual data, as well as the use of monolingual word embeddings for training. In this work, we explore the possibility to obtain bilingual and multilingual VQA models. In that regard, we use an already established VQA model that uses monolingual word embeddings as part of its pipeline and substitute them by FastText and BPEmb multilingual word embeddings that have been aligned to English. Our experiments demonstrate that it is possible to obtain bilingual and multilingual VQA models with a minimal loss in performance in languages not used during training, as well as a multilingual model trained in multiple languages that match the performance of the respective monolingual baselines.
Keywords: Scene text; Visual question answering; Multilingual word embeddings; Vision and language; Deep learning
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Ali Furkan Biten, Ruben Tito, Lluis Gomez, Ernest Valveny, & Dimosthenis Karatzas. (2022). OCR-IDL: OCR Annotations for Industry Document Library Dataset. In ECCV Workshop on Text in Everything.
Abstract: Pretraining has proven successful in Document Intelligence tasks where deluge of documents are used to pretrain the models only later to be finetuned on downstream tasks. One of the problems of the pretraining approaches is the inconsistent usage of pretraining data with different OCR engines leading to incomparable results between models. In other words, it is not obvious whether the performance gain is coming from diverse usage of amount of data and distinct OCR engines or from the proposed models. To remedy the problem, we make public the OCR annotations for IDL documents using commercial OCR engine given their superior performance over open source OCR models. The contributed dataset (OCR-IDL) has an estimated monetary value over 20K US$. It is our hope that OCR-IDL can be a starting point for future works on Document Intelligence. All of our data and its collection process with the annotations can be found in this https URL.
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Sonia Baeza, Debora Gil, I.Garcia Olive, M.Salcedo, J.Deportos, Carles Sanchez, et al. (2022). A novel intelligent radiomic analysis of perfusion SPECT/CT images to optimize pulmonary embolism diagnosis in COVID-19 patients. EJNMMI-PHYS - EJNMMI Physics, 9(1, Article 84), 1–17.
Abstract: Background: COVID-19 infection, especially in cases with pneumonia, is associated with a high rate of pulmonary embolism (PE). In patients with contraindications for CT pulmonary angiography (CTPA) or non-diagnostic CTPA, perfusion single-photon emission computed tomography/computed tomography (Q-SPECT/CT) is a diagnostic alternative. The goal of this study is to develop a radiomic diagnostic system to detect PE based only on the analysis of Q-SPECT/CT scans.
Methods: This radiomic diagnostic system is based on a local analysis of Q-SPECT/CT volumes that includes both CT and Q-SPECT values for each volume point. We present a combined approach that uses radiomic features extracted from each scan as input into a fully connected classifcation neural network that optimizes a weighted crossentropy loss trained to discriminate between three diferent types of image patterns (pixel sample level): healthy lungs (control group), PE and pneumonia. Four types of models using diferent confguration of parameters were tested.
Results: The proposed radiomic diagnostic system was trained on 20 patients (4,927 sets of samples of three types of image patterns) and validated in a group of 39 patients (4,410 sets of samples of three types of image patterns). In the training group, COVID-19 infection corresponded to 45% of the cases and 51.28% in the test group. In the test group, the best model for determining diferent types of image patterns with PE presented a sensitivity, specifcity, positive predictive value and negative predictive value of 75.1%, 98.2%, 88.9% and 95.4%, respectively. The best model for detecting
pneumonia presented a sensitivity, specifcity, positive predictive value and negative predictive value of 94.1%, 93.6%, 85.2% and 97.6%, respectively. The area under the curve (AUC) was 0.92 for PE and 0.91 for pneumonia. When the results obtained at the pixel sample level are aggregated into regions of interest, the sensitivity of the PE increases to 85%, and all metrics improve for pneumonia.
Conclusion: This radiomic diagnostic system was able to identify the diferent lung imaging patterns and is a frst step toward a comprehensive intelligent radiomic system to optimize the diagnosis of PE by Q-SPECT/CT.
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Ana Garcia Rodriguez, Yael Tudela, Henry Cordova, S. Carballal, I. Ordas, L. Moreira, et al. (2022). First in Vivo Computer-Aided Diagnosis of Colorectal Polyps using White Light Endoscopy. END - Endoscopy, 54.
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