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	Author	Xavier Baro; David Masip; Elena Planas; Julia Minguillon
	Title	PeLP: Plataforma para el Aprendizaje de Lenguajes de Programación			Type	Miscellaneous
	Year	2013	Publication	XV Jornadas de Enseñanza Universitaria de la Informatica	Abbreviated Journal
	Volume		Issue		Pages
	Keywords
	Abstract
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference	JENUI
	Notes	OR;HuPBA;MV			Approved	no
	Call Number	Admin @ si @ BMP2013			Serial	2237
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	Author	Marina Alberti; Simone Balocco; Xavier Carrillo; J. Mauri; Petia Radeva
	Title	Automatic non-rigid temporal alignment of IVUS sequences: method and quantitative validation			Type	Journal Article
	Year	2013	Publication	Ultrasound in Medicine and Biology	Abbreviated Journal	UMB
	Volume	39	Issue	9	Pages	1698-712
	Keywords	Intravascular ultrasound; Dynamic time warping; Non-rigid alignment; Sequence matching; Partial overlapping strategy
	Abstract	Clinical studies on atherosclerosis regression/progression performed by intravascular ultrasound analysis would benefit from accurate alignment of sequences of the same patient before and after clinical interventions and at follow-up. In this article, a methodology for automatic alignment of intravascular ultrasound sequences based on the dynamic time warping technique is proposed. The non-rigid alignment is adapted to the specific task by applying it to multidimensional signals describing the morphologic content of the vessel. Moreover, dynamic time warping is embedded into a framework comprising a strategy to address partial overlapping between acquisitions and a term that regularizes non-physiologic temporal compression/expansion of the sequences. Extensive validation is performed on both synthetic and in vivo data. The proposed method reaches alignment errors of approximately 0.43 mm for pairs of sequences acquired during the same intervention phase and 0.77 mm for pairs of sequences acquired at successive intervention stages.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	MILAB			Approved	no
	Call Number	Admin @ si @ ABC2013			Serial	2313
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	Author	Carles Fernandez; Jordi Gonzalez; Joao Manuel R. S. Taveres; Xavier Roca
	Title	Towards Ontological Cognitive System			Type	Book Chapter
	Year	2013	Publication	Topics in Medical Image Processing and Computational Vision	Abbreviated Journal
	Volume	8	Issue		Pages	87-99
	Keywords
	Abstract	The increasing ubiquitousness of digital information in our daily lives has positioned video as a favored information vehicle, and given rise to an astonishing generation of social media and surveillance footage. This raises a series of technological demands for automatic video understanding and management, which together with the compromising attentional limitations of human operators, have motivated the research community to guide its steps towards a better attainment of such capabilities. As a result, current trends on cognitive vision promise to recognize complex events and self-adapt to different environments, while managing and integrating several types of knowledge. Future directions suggest to reinforce the multi-modal fusion of information sources and the communication with end-users.
	Address
	Corporate Author				Thesis
	Publisher	Springer Netherlands	Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN	2212-9391	ISBN	978-94-007-0725-2	Medium
	Area		Expedition		Conference
	Notes	ISE; 605.203; 302.018; 600.049			Approved	no
	Call Number	Admin @ si @ FGT2013			Serial	2287
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	Author	Thanh Ha Do; Salvatore Tabbone; Oriol Ramos Terrades
	Title	Document noise removal using sparse representations over learned dictionary			Type	Conference Article
	Year	2013	Publication	Symposium on Document engineering	Abbreviated Journal
	Volume		Issue		Pages	161-168
	Keywords
	Abstract	best paper award In this paper, we propose an algorithm for denoising document images using sparse representations. Following a training set, this algorithm is able to learn the main document characteristics and also, the kind of noise included into the documents. In this perspective, we propose to model the noise energy based on the normalized cross-correlation between pairs of noisy and non-noisy documents. Experimental results on several datasets demonstrate the robustness of our method compared with the state-of-the-art.
	Address	Barcelona; October 2013
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN	978-1-4503-1789-4	Medium
	Area		Expedition		Conference	ACM-DocEng
	Notes	DAG; 600.061			Approved	no
	Call Number	Admin @ si @ DTR2013a			Serial	2330
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	Author	Laura Igual; Xavier Baro
	Title	Experiencia de aprendizaje de programación basada en proyectos. Simposio-Taller Estrategias y herramientas para el aprendizaje y la evaluación			Type	Miscellaneous
	Year	2013	Publication	Simposio-Taller Estrategias y herramientas para el aprendizaje y la evaluación, de las XIX Jornadas sobre la Enseñanza Universitaria de la Informática	Abbreviated Journal
	Volume		Issue		Pages
	Keywords
	Abstract
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference	JENUI
	Notes	OR;HuPBA;MV			Approved	no
	Call Number	Admin @ si @ IgB2013			Serial	2257
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	Author	Carles Sanchez; Jorge Bernal; Debora Gil; F. Javier Sanchez
	Title	On-line lumen centre detection in gastrointestinal and respiratory endoscopy			Type	Conference Article
	Year	2013	Publication	Second International Workshop Clinical Image-Based Procedures	Abbreviated Journal
	Volume	8361	Issue		Pages	31-38
	Keywords	Lumen centre detection; Bronchoscopy; Colonoscopy
	Abstract	We present in this paper a novel lumen centre detection for gastrointestinal and respiratory endoscopic images. The proposed method is based on the appearance and geometry of the lumen, which we defined as the darkest image region which centre is a hub of image gradients. Experimental results validated on the first public annotated gastro-respiratory database prove the reliability of the method for a wide range of images (with precision over 95 %).
	Address	Nagoya; Japan; September 2013
	Corporate Author				Thesis
	Publisher	Springer International Publishing	Place of Publication		Editor	Erdt, Marius and Linguraru, Marius George and Oyarzun Laura, Cristina and Shekhar, Raj and Wesarg, Stefan and González Ballester, Miguel Angel and Drechsler, Klaus
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title	LNCS
	Series Volume		Series Issue		Edition
	ISSN		ISBN	978-3-319-05665-4	Medium
	Area	800	Expedition		Conference	CLIP
	Notes	MV; IAM; 600.047; 600.044; 600.060			Approved	no
	Call Number	Admin @ si @ SBG2013			Serial	2302
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	Author	Ferran Poveda; Debora Gil; Enric Marti; Albert Andaluz; Manel Ballester;Francesc Carreras Costa
	Title	Helical structure of the cardiac ventricular anatomy assessed by Diffusion Tensor Magnetic Resonance Imaging multi-resolution tractography			Type	Journal Article
	Year	2013	Publication	Revista Española de Cardiología	Abbreviated Journal	REC
	Volume	66	Issue	10	Pages	782-790
	Keywords	Heart;Diffusion magnetic resonance imaging;Diffusion tractography;Helical heart;Myocardial ventricular band.
	Abstract	Deep understanding of myocardial structure linking morphology and function of the heart would unravel crucial knowledge for medical and surgical clinical procedures and studies. Several conceptual models of myocardial fiber organization have been proposed but the lack of an automatic and objective methodology prevented an agreement. We sought to deepen in this knowledge through advanced computer graphic representations of the myocardial fiber architecture by diffusion tensor magnetic resonance imaging (DT-MRI). We performed automatic tractography reconstruction of unsegmented DT-MRI canine heart datasets coming from the public database of the Johns Hopkins University. Full scale tractographies have been build with 200 seeds and are composed by streamlines computed on the vectorial field of primary eigenvectors given at the diffusion tensor volumes. Also, we introduced a novel multi-scale visualization technique in order to obtain a simplified tractography. This methodology allowed to keep the main geometric features of the fiber tracts, making easier to decipher the main properties of the architectural organization of the heart. On the analysis of the output from our tractographic representations we found exact correlation with low-level details of myocardial architecture, but also with the more abstract conceptualization of a continuous helical ventricular myocardial fiber array. Objective analysis of myocardial architecture by an automated method, including the entire myocardium and using several 3D levels of complexity, reveals a continuous helical myocardial fiber arrangement of both right and left ventricles, supporting the anatomical model of the helical ventricular myocardial band described by Torrent-Guasp.
	Address
	Corporate Author				Thesis
	Publisher	Elsevier	Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	IAM; 600.044; 600.060			Approved	no
	Call Number	IAM @ iam @ PGM2013			Serial	2194
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	Author	Hongxing Gao; Marçal Rusiñol; Dimosthenis Karatzas; Apostolos Antonacopoulos; Josep Llados
	Title	An interactive appearance-based document retrieval system for historical newspapers			Type	Conference Article
	Year	2013	Publication	Proceedings of the International Conference on Computer Vision Theory and Applications	Abbreviated Journal
	Volume		Issue		Pages	84-87
	Keywords
	Abstract	In this paper we present a retrieval-based application aimed at assisting a user to semi-automatically segment an incoming flow of historical newspaper images by automatically detecting a particular type of pages based on their appearance. A visual descriptor is used to assess page similarity while a relevance feedback process allow refining the results iteratively. The application is tested on a large dataset of digitised historic newspapers.
	Address	Barcelona; February 2013
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference	VISAPP
	Notes	DAG; 600.056; 600.045; 605.203			Approved	no
	Call Number	Admin @ si @ GRK2013a			Serial	2290
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	Author	Christophe Rigaud; Dimosthenis Karatzas; Joost Van de Weijer; Jean-Christophe Burie; Jean-Marc Ogier
	Title	Automatic text localisation in scanned comic books			Type	Conference Article
	Year	2013	Publication	Proceedings of the International Conference on Computer Vision Theory and Applications	Abbreviated Journal
	Volume		Issue		Pages	814-819
	Keywords	Text localization; comics; text/graphic separation; complex background; unstructured document
	Abstract	Comic books constitute an important cultural heritage asset in many countries. Digitization combined with subsequent document understanding enable direct content-based search as opposed to metadata only search (e.g. album title or author name). Few studies have been done in this direction. In this work we detail a novel approach for the automatic text localization in scanned comics book pages, an essential step towards a fully automatic comics book understanding. We focus on speech text as it is semantically important and represents the majority of the text present in comics. The approach is compared with existing methods of text localization found in the literature and results are presented.
	Address	Barcelona; February 2013
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference	VISAPP
	Notes	DAG; CIC; 600.056			Approved	no
	Call Number	Admin @ si @ RKW2013b			Serial	2261
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	Author	Carles Sanchez; Debora Gil; Antoni Rosell; Albert Andaluz; F. Javier Sanchez
	Title	Segmentation of Tracheal Rings in Videobronchoscopy combining Geometry and Appearance			Type	Conference Article
	Year	2013	Publication	Proceedings of the International Conference on Computer Vision Theory and Applications	Abbreviated Journal
	Volume	1	Issue		Pages	153--161
	Keywords	Video-bronchoscopy, tracheal ring segmentation, trachea geometric and appearance model
	Abstract	Videobronchoscopy is a medical imaging technique that allows interactive navigation inside the respiratory pathways and minimal invasive interventions. Tracheal procedures are ordinary interventions that require measurement of the percentage of obstructed pathway for injury (stenosis) assessment. Visual assessment of stenosis in videobronchoscopic sequences requires high expertise of trachea anatomy and is prone to human error. Accurate detection of tracheal rings is the basis for automated estimation of the size of stenosed trachea. Processing of videobronchoscopic images acquired at the operating room is a challenging task due to the wide range of artifacts and acquisition conditions. We present a model of the geometric-appearance of tracheal rings for its detection in videobronchoscopic videos. Experiments on sequences acquired at the operating room, show a performance close to inter-observer variability
	Address	Barcelona; February 2013
	Corporate Author				Thesis
	Publisher	SciTePress	Place of Publication	Portugal	Editor	Sebastiano Battiato and José Braz
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title	LNCS
	Series Volume		Series Issue		Edition
	ISSN		ISBN	978-989-8565-47-1	Medium
	Area	800	Expedition		Conference	VISAPP
	Notes	IAM;MV; 600.044; 600.047; 600.060; 605.203			Approved	no
	Call Number	IAM @ iam @ SGR2013			Serial	2123
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	Author	Joan M. Nuñez; Jorge Bernal; F. Javier Sanchez; Fernando Vilariño
	Title	Blood Vessel Characterization in Colonoscopy Images to Improve Polyp Localization			Type	Conference Article
	Year	2013	Publication	Proceedings of the International Conference on Computer Vision Theory and Applications	Abbreviated Journal
	Volume	1	Issue		Pages	162-171
	Keywords	Colonoscopy; Blood vessel; Linear features; Valley detection
	Abstract	This paper presents an approach to mitigate the contribution of blood vessels to the energy image used at different tasks of automatic colonoscopy image analysis. This goal is achieved by introducing a characterization of endoluminal scene objects which allows us to differentiate between the trace of 2-dimensional visual objects,such as vessels, and shades from 3-dimensional visual objects, such as folds. The proposed characterization is based on the influence that the object shape has in the resulting visual feature, and it leads to the development of a blood vessel attenuation algorithm. A database consisting of manually labelled masks was built in order to test the performance of our method, which shows an encouraging success in blood vessel mitigation while keeping other structures intact. Moreover, by extending our method to the only available polyp localization algorithm tested on a public database, blood vessel mitigation proved to have a positive influence on the overall performance.
	Address	Barcelona; February 2013
	Corporate Author				Thesis
	Publisher	SciTePress	Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area	800	Expedition		Conference	VISIGRAPP
	Notes	MV; 600.054; 600.057;SIAI			Approved	no
	Call Number	IAM @ iam @ NBS2013			Serial	2198
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	Author	Mirko Arnold; Anarta Ghosh; Glen Doherty; Hugh Mulcahy; Stephen Patchett; Gerard Lacey
	Title	Towards Automatic Direct Observation of Procedure and Skill (DOPS) in Colonoscopy			Type	Conference Article
	Year	2013	Publication	Proceedings of the International Conference on Computer Vision Theory and Applications	Abbreviated Journal
	Volume		Issue		Pages	48-53
	Keywords
	Abstract
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area	800	Expedition		Conference	VISIGRAPP
	Notes	MV			Approved	no
	Call Number	fernando @ fernando @			Serial	2427
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	Author	German Ros; J. Guerrero; Angel Sappa; Antonio Lopez
	Title	VSLAM pose initialization via Lie groups and Lie algebras optimization			Type	Conference Article
	Year	2013	Publication	Proceedings of IEEE International Conference on Robotics and Automation	Abbreviated Journal
	Volume		Issue		Pages	5740 - 5747
	Keywords	SLAM
	Abstract	We present a novel technique for estimating initial 3D poses in the context of localization and Visual SLAM problems. The presented approach can deal with noise, outliers and a large amount of input data and still performs in real time in a standard CPU. Our method produces solutions with an accuracy comparable to those produced by RANSAC but can be much faster when the percentage of outliers is high or for large amounts of input data. On the current work we propose to formulate the pose estimation as an optimization problem on Lie groups, considering their manifold structure as well as their associated Lie algebras. This allows us to perform a fast and simple optimization at the same time that conserve all the constraints imposed by the Lie group SE(3). Additionally, we present several key design concepts related with the cost function and its Jacobian; aspects that are critical for the good performance of the algorithm.
	Address	Karlsruhe; Germany; May 2013
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN	1050-4729	ISBN	978-1-4673-5641-1	Medium
	Area		Expedition		Conference	ICRA
	Notes	ADAS; 600.054; 600.055; 600.057			Approved	no
	Call Number	Admin @ si @ RGS2013a; ADAS @ adas @			Serial	2225
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	Author	Olivier Penacchio; Xavier Otazu; Laura Dempere-Marco
	Title	A Neurodynamical Model of Brightness Induction in V1			Type	Journal Article
	Year	2013	Publication	PloS ONE	Abbreviated Journal	Plos
	Volume	8	Issue	5	Pages	e64086
	Keywords
	Abstract	Brightness induction is the modulation of the perceived intensity of an area by the luminance of surrounding areas. Recent neurophysiological evidence suggests that brightness information might be explicitly represented in V1, in contrast to the more common assumption that the striate cortex is an area mostly responsive to sensory information. Here we investigate possible neural mechanisms that offer a plausible explanation for such phenomenon. To this end, a neurodynamical model which is based on neurophysiological evidence and focuses on the part of V1 responsible for contextual influences is presented. The proposed computational model successfully accounts for well known psychophysical effects for static contexts and also for brightness induction in dynamic contexts defined by modulating the luminance of surrounding areas. This work suggests that intra-cortical interactions in V1 could, at least partially, explain brightness induction effects and reveals how a common general architecture may account for several different fundamental processes, such as visual saliency and brightness induction, which emerge early in the visual processing pathway.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	CIC			Approved	no
	Call Number	Admin @ si @ POD2013			Serial	2242
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	Author	A.S. Coquel; Jean-Pascal Jacob; M. Primet; A. Demarez; Mariella Dimiccoli; T. Julou; L. Moisan; A. Lindner; H. Berry
	Title	Localization of protein aggregation in Escherichia coli is governed by diffusion and nucleoid macromolecular crowding effect			Type	Journal Article
	Year	2013	Publication	Plos Computational Biology	Abbreviated Journal	PCB
	Volume	9	Issue	4	Pages
	Keywords
	Abstract	Aggregates of misfolded proteins are a hallmark of many age-related diseases. Recently, they have been linked to aging of Escherichia coli (E. coli) where protein aggregates accumulate at the old pole region of the aging bacterium. Because of the potential of E. coli as a model organism, elucidating aging and protein aggregation in this bacterium may pave the way to significant advances in our global understanding of aging. A first obstacle along this path is to decipher the mechanisms by which protein aggregates are targeted to specific intercellular locations. Here, using an integrated approach based on individual-based modeling, time-lapse fluorescence microscopy and automated image analysis, we show that the movement of aging-related protein aggregates in E. coli is purely diffusive (Brownian). Using single-particle tracking of protein aggregates in live E. coli cells, we estimated the average size and diffusion constant of the aggregates. Our results provide evidence that the aggregates passively diffuse within the cell, with diffusion constants that depend on their size in agreement with the Stokes-Einstein law. However, the aggregate displacements along the cell long axis are confined to a region that roughly corresponds to the nucleoid-free space in the cell pole, thus confirming the importance of increased macromolecular crowding in the nucleoids. We thus used 3D individual-based modeling to show that these three ingredients (diffusion, aggregation and diffusion hindrance in the nucleoids) are sufficient and necessary to reproduce the available experimental data on aggregate localization in the cells. Taken together, our results strongly support the hypothesis that the localization of aging-related protein aggregates in the poles of E. coli results from the coupling of passive diffusion-aggregation with spatially non-homogeneous macromolecular crowding. They further support the importance of “soft” intracellular structuring (based on macromolecular crowding) in diffusion-based protein localization in E. coli.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor	: Stanislav Shvartsman, Princeton University, United States of America
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes				Approved	no
	Call Number	Admin @ si @CJP2013			Serial	2786
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