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Author Jorge Bernal edit  openurl
  Title Polyp Localization and Segmentation in Colonoscopy Images by Means of a Model of Appearance for Polyps Type Book Whole
  Year 2012 Publication PhD Thesis, Universitat Autonoma de Barcelona-CVC Abbreviated Journal  
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  Abstract Colorectal cancer is the fourth most common cause of cancer death worldwide and its survival rate depends on the stage in which it is detected on hence the necessity for an early colon screening. There are several screening techniques but colonoscopy is still nowadays the gold standard, although it has some drawbacks such as the miss rate. Our contribution, in the field of intelligent systems for colonoscopy, aims at providing a polyp localization and a polyp segmentation system based on a model of appearance for polyps. To develop both methods we define a model of appearance for polyps, which describes a polyp as enclosed by intensity valleys. The novelty of our contribution resides on the fact that we include in our model aspects of the image formation and we also consider the presence of other elements from the endoluminal scene such as specular highlights and blood vessels, which have an impact on the performance of our methods. In order to develop our polyp localization method we accumulate valley information in order to generate energy maps, which are also used to guide the polyp segmentation. Our methods achieve promising results in polyp localization and segmentation. As we want to explore the usability of our methods we present a comparative analysis between physicians fixations obtained via an eye tracking device and our polyp localization method. The results show that our method is indistinguishable to novice physicians although it is far from expert physicians.  
  Address  
  Corporate Author Thesis Ph.D. thesis  
  Publisher Ediciones Graficas Rey Place of Publication Editor F. Javier Sanchez;Fernando Vilariño  
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  Area 800 Expedition Conference  
  Notes MV Approved no  
  Call Number Admin @ si @ Ber2012 Serial 2211  
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Author Fernando Vilariño; Stephan Ameling; Gerard Lacey; Stephen Patchett; Hugh Mulcahy edit  doi
openurl 
  Title Eye Tracking Search Patterns in Expert and Trainee Colonoscopists: A Novel Method of Assessing Endoscopic Competency? Type Journal Article
  Year 2009 Publication Gastrointestinal Endoscopy Abbreviated Journal GI  
  Volume 69 Issue 5 Pages 370  
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  Notes MV;SIAI Approved no  
  Call Number fernando @ fernando @ Serial 2420  
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Author Rozenn Dhayot; Fernando Vilariño; Gerard Lacey edit  doi
openurl 
  Title Improving the Quality of Color Colonoscopy Videos Type Journal Article
  Year 2008 Publication EURASIP Journal on Image and Video Processing Abbreviated Journal EURASIP JIVP  
  Volume 139429 Issue 1 Pages 1-9  
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  Notes MV;SIAI Approved no  
  Call Number fernando @ fernando @ Serial 2422  
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Author Mirko Arnold; Anarta Ghosh; Stephen Ameling; G Lacey edit  doi
openurl 
  Title Automatic segmentation and inpainting of specular highlights for endoscopic imaging Type Journal Article
  Year 2010 Publication EURASIP Journal on Image and Video Processing Abbreviated Journal EURASIP JIVP  
  Volume 2010 Issue 9 Pages  
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  Notes MV Approved no  
  Call Number fernando @ fernando @ Serial 2423  
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Author Mirko Arnold; Anarta Ghosh; Gerard Lacey; Stephen Patchett; Hugh Mulcahy edit  openurl
  Title Indistinct frame detection in colonoscopy videos Type Conference Article
  Year 2009 Publication Machine Vision and Image Processing Conference Abbreviated Journal  
  Volume Issue Pages 47-52  
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  Notes MV Approved no  
  Call Number fernando @ fernando @ Serial 2424  
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Author Mirko Arnold; Stephan Ameling; Anarta Ghosh; Gerard Lacey edit  doi
openurl 
  Title Quality Improvement of Endoscopy Videos Type Conference Article
  Year 2011 Publication Proceedings of the 8th IASTED International Conference on Biomedical Engineering Abbreviated Journal  
  Volume 723 Issue Pages  
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  Notes MV Approved no  
  Call Number fernando @ fernando @ Serial 2426  
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Author Mirko Arnold; Anarta Ghosh; Glen Doherty; Hugh Mulcahy; Stephen Patchett; Gerard Lacey edit  doi
openurl 
  Title Towards Automatic Direct Observation of Procedure and Skill (DOPS) in Colonoscopy Type Conference Article
  Year 2013 Publication Proceedings of the International Conference on Computer Vision Theory and Applications Abbreviated Journal  
  Volume Issue Pages 48-53  
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  Area 800 Expedition Conference VISIGRAPP  
  Notes MV Approved no  
  Call Number fernando @ fernando @ Serial 2427  
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Author Stefan Ameling; Stephan Wirth; Dietrich Paulus; Gerard Lacey; Fernando Vilariño edit  doi
openurl 
  Title Texture-based Polyp Detection in Colonoscopy Type Conference Article
  Year 2009 Publication Proc. BILDVERARBEITUNG FÜR DIE MEDIZIN Abbreviated Journal  
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  Notes MV;SIAI Approved no  
  Call Number fernando @ fernando @ Serial 2428  
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Author Fernando Vilariño; Gerard Lacey edit  openurl
  Title QUALITY ASSESSMENT IN COLONOSCOPY New challenges through computer vision-based systems Type Conference Article
  Year 2009 Publication in Proc. 3rd International Conference on Biomedical Electronics and Devices Abbreviated Journal  
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  Notes MV;SIAI Approved no  
  Call Number fernando @ fernando @ Serial 2430  
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Author Fernando Vilariño; Gerard Lacey; Jiang Zhou; Hugh Mulcahy; Stephen Patchett edit  openurl
  Title Automatic Labeling of Colonoscopy Video for Cancer Detection Type Conference Article
  Year 2007 Publication In Proc. berian Conference, IbPRIA Abbreviated Journal  
  Volume Issue Pages 290-297  
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  Notes MV;SIAI Approved no  
  Call Number fernando @ fernando @ Serial 2431  
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Author Carles Sanchez;F. Javier Sanchez; Antoni Rosell; Debora Gil edit   pdf
url  doi
isbn  openurl
  Title An illumination model of the trachea appearance in videobronchoscopy images Type Book Chapter
  Year 2012 Publication Image Analysis and Recognition Abbreviated Journal LNCS  
  Volume 7325 Issue Pages 313-320  
  Keywords (up) Bronchoscopy, tracheal ring, stenosis assesment, trachea appearance model, segmentation  
  Abstract Videobronchoscopy is a medical imaging technique that allows interactive navigation inside the respiratory pathways. This imaging modality provides realistic images and allows non-invasive minimal intervention procedures. Tracheal procedures are routinary interventions that require assessment of the percentage of obstructed pathway for injury (stenosis) detection. Visual assessment in videobronchoscopic sequences requires high expertise of trachea anatomy and is prone to human error.
This paper introduces an automatic method for the estimation of steneosed trachea percentage reduction in videobronchoscopic images. We look for tracheal rings , whose deformation determines the degree of obstruction. For ring extraction , we present a ring detector based on an illumination and appearance model. This model allows us to parametrise the ring detection. Finally, we can infer optimal estimation parameters for any video resolution.		  
  Address Aveiro, Portugal  
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  Publisher Springer Berlin Heidelberg Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Lecture Notes in Computer Science Abbreviated Series Title LNCS  
  Series Volume Series Issue Edition  
  ISSN 0302-9743 ISBN 978-3-642-31297-7 Medium  
  Area 800 Expedition Conference ICIAR  
  Notes MV;IAM Approved no  
  Call Number IAM @ iam @ SSR2012 Serial 1898  
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Author Fernando Vilariño; Panagiota Spyridonos; Jordi Vitria; Fernando Azpiroz; Petia Radeva edit   pdf
doi  isbn
openurl 
  Title Automatic Detection of Intestinal Juices in Wireless Capsule Video Endoscopy Type Conference Article
  Year 2006 Publication 18th International Conference on Pattern Recognition Abbreviated Journal  
  Volume 4 Issue Pages 719-722  
  Keywords (up) Clinical diagnosis , Endoscopes , Fluids and secretions , Gabor filters , Hospitals , Image sequence analysis , Intestines , Lighting , Shape , Visualization  
  Abstract Wireless capsule video endoscopy is a novel and challenging clinical technique, whose major reported drawback relates to the high amount of time needed for video visualization. In this paper, we propose a method for the rejection of the parts of the video resulting not valid for analysis by means of automatic detection of intestinal juices. We applied Gabor filters for the characterization of the bubble-like shape of intestinal juices in fasting patients. Our method achieves a significant reduction in visualization time, with no relevant loss of valid frames. The proposed approach is easily extensible to other image analysis scenarios where the described pattern of bubbles can be found.  
  Address Hong Kong  
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  Series Volume Series Issue Edition  
  ISSN 1051-4651 ISBN 0-7695-2521-0 Medium  
  Area 800 Expedition Conference ICPR  
  Notes MV;OR;MILAB;SIAI Approved no  
  Call Number BCNPCL @ bcnpcl @ VSV2006b; IAM @ iam @ VSV2006g Serial 727  
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Author Jorge Bernal; F. Javier Sanchez; Fernando Vilariño edit   pdf
doi  isbn
openurl 
  Title A Region Segmentation Method for Colonoscopy Images Using a Model of Polyp Appearance Type Conference Article
  Year 2011 Publication 5th Iberian Conference on Pattern Recognition and Image Analysis Abbreviated Journal  
  Volume 6669 Issue Pages 134-143     
  Keywords (up) Colonoscopy, Polyp Detection, Region Merging, Region Segmentation.  
  Abstract This work aims at the segmentation of colonoscopy images into a minimum number of informative regions. Our method performs in a way such, if a polyp is present in the image, it will be exclusively and totally contained in a single region. This result can be used in later stages to classify regions as polyp-containing candidates. The output of the algorithm also defines which regions can be considered as non-informative. The algorithm starts with a high number of initial regions and merges them taking into account the model of polyp appearance obtained from available data. The results show that our segmentations of polyp regions are more accurate than state-of-the-art methods.  
  Address Las Palmas de Gran Canaria, June 2011  
  Corporate Author SpringerLink Thesis  
  Publisher Place of Publication Editor Vitrià, Jordi and Sanches, João and Hernández, Mario  
  Language Summary Language Original Title  
  Series Editor Series Title Lecture Notes in Computer Science Abbreviated Series Title LNCS  
  Series Volume Series Issue Edition  
  ISSN ISBN 978-3-642-21256-7 Medium  
  Area 800 Expedition Conference IbPRIA  
  Notes MV;SIAI Approved no  
  Call Number IAM @ iam @ BSV2011c Serial 1696  
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Author Jorge Bernal; F. Javier Sanchez; Fernando Vilariño edit   pdf
url  doi
openurl 
  Title Towards Automatic Polyp Detection with a Polyp Appearance Model Type Journal Article
  Year 2012 Publication Pattern Recognition Abbreviated Journal PR  
  Volume 45 Issue 9 Pages 3166-3182  
  Keywords (up) Colonoscopy,PolypDetection,RegionSegmentation,SA-DOVA descriptot  
  Abstract This work aims at the automatic polyp detection by using a model of polyp appearance in the context of the analysis of colonoscopy videos. Our method consists of three stages: region segmentation, region description and region classification. The performance of our region segmentation method guarantees that if a polyp is present in the image, it will be exclusively and totally contained in a single region. The output of the algorithm also defines which regions can be considered as non-informative. We define as our region descriptor the novel Sector Accumulation-Depth of Valleys Accumulation (SA-DOVA), which provides a necessary but not sufficient condition for the polyp presence. Finally, we classify our segmented regions according to the maximal values of the SA-DOVA descriptor. Our preliminary classification results are promising, especially when classifying those parts of the image that do not contain a polyp inside.  
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  Publisher Elsevier Place of Publication Editor  
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  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 0031-3203 ISBN Medium  
  Area 800 Expedition Conference IbPRIA  
  Notes MV;SIAI Approved no  
  Call Number Admin @ si @ BSV2012; IAM @ iam Serial 1997  
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Author Joan M. Nuñez; Jorge Bernal; F. Javier Sanchez; Fernando Vilariño edit   pdf
doi  openurl
  Title Blood Vessel Characterization in Colonoscopy Images to Improve Polyp Localization Type Conference Article
  Year 2013 Publication Proceedings of the International Conference on Computer Vision Theory and Applications Abbreviated Journal  
  Volume 1 Issue Pages 162-171  
  Keywords (up) Colonoscopy; Blood vessel; Linear features; Valley detection  
  Abstract This paper presents an approach to mitigate the contribution of blood vessels to the energy image used at different tasks of automatic colonoscopy image analysis. This goal is achieved by introducing a characterization of endoluminal scene objects which allows us to differentiate between the trace of 2-dimensional visual objects,such as vessels, and shades from 3-dimensional visual objects, such as folds. The proposed characterization is based on the influence that the object shape has in the resulting visual feature, and it leads to the development of a blood vessel attenuation algorithm. A database consisting of manually labelled masks was built in order to test the performance of our method, which shows an encouraging success in blood vessel mitigation while keeping other structures intact. Moreover, by extending our method to the only available polyp localization
algorithm tested on a public database, blood vessel mitigation proved to have a positive influence on the overall performance.		  
  Address Barcelona; February 2013  
  Corporate Author Thesis  
  Publisher SciTePress Place of Publication Editor  
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  Area 800 Expedition Conference VISIGRAPP  
  Notes MV; 600.054; 600.057;SIAI Approved no  
  Call Number IAM @ iam @ NBS2013 Serial 2198  
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