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| Author | Zhaocheng Liu; Luis Herranz; Fei Yang; Saiping Zhang; Shuai Wan; Marta Mrak; Marc Gorriz | ||||
| Title | Slimmable Video Codec | Type | Conference Article | ||
| Year | 2022 | Publication | CVPR 2022 Workshop and Challenge on Learned Image Compression (CLIC 2022, 5th Edition) | Abbreviated Journal | |
| Volume | Issue | Pages | 1742-1746 | ||
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| Abstract | Neural video compression has emerged as a novel paradigm combining trainable multilayer neural net-works and machine learning, achieving competitive rate-distortion (RD) performances, but still remaining impractical due to heavy neural architectures, with large memory and computational demands. In addition, models are usually optimized for a single RD tradeoff. Recent slimmable image codecs can dynamically adjust their model capacity to gracefully reduce the memory and computation requirements, without harming RD performance. In this paper we propose a slimmable video codec (SlimVC), by integrating a slimmable temporal entropy model in a slimmable autoencoder. Despite a significantly more complex architecture, we show that slimming remains a powerful mechanism to control rate, memory footprint, computational cost and latency, all being important requirements for practical video compression. | ||||
| Address | Virtual; 19 June 2022 | ||||
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| Area | Expedition | Conference | CVPRW | ||
| Notes | MACO; 601.379; 601.161 | Approved | no | ||
| Call Number | Admin @ si @ LHY2022 | Serial | 3687 | ||
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| Author | David Berga; Xavier Otazu | ||||
| Title | A neurodynamic model of saliency prediction in v1 | Type | Journal Article | ||
| Year | 2022 | Publication | Neural Computation | Abbreviated Journal | NEURALCOMPUT |
| Volume | 34 | Issue | 2 | Pages | 378-414 |
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| Abstract | Lateral connections in the primary visual cortex (V1) have long been hypothesized to be responsible for several visual processing mechanisms such as brightness induction, chromatic induction, visual discomfort, and bottom-up visual attention (also named saliency). Many computational models have been developed to independently predict these and other visual processes, but no computational model has been able to reproduce all of them simultaneously. In this work, we show that a biologically plausible computational model of lateral interactions of V1 is able to simultaneously predict saliency and all the aforementioned visual processes. Our model's architecture (NSWAM) is based on Penacchio's neurodynamic model of lateral connections of V1. It is defined as a network of firing rate neurons, sensitive to visual features such as brightness, color, orientation, and scale. We tested NSWAM saliency predictions using images from several eye tracking data sets. We show that the accuracy of predictions obtained by our architecture, using shuffled metrics, is similar to other state-of-the-art computational methods, particularly with synthetic images (CAT2000-Pattern and SID4VAM) that mainly contain low-level features. Moreover, we outperform other biologically inspired saliency models that are specifically designed to exclusively reproduce saliency. We show that our biologically plausible model of lateral connections can simultaneously explain different visual processes present in V1 (without applying any type of training or optimization and keeping the same parameterization for all the visual processes). This can be useful for the definition of a unified architecture of the primary visual cortex. | ||||
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| Notes | NEUROBIT; 600.128; 600.120 | Approved | no | ||
| Call Number | Admin @ si @ BeO2022 | Serial | 3696 | ||
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| Author | Y. Mori; M.Misawa; Jorge Bernal; M. Bretthauer; S.Kudo; A. Rastogi; Gloria Fernandez Esparrach | ||||
| Title | Artificial Intelligence for Disease Diagnosis-the Gold Standard Challenge | Type | Journal Article | ||
| Year | 2022 | Publication | Gastrointestinal Endoscopy | Abbreviated Journal | |
| Volume | 96 | Issue | 2 | Pages | 370-372 |
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| Notes | ISE | Approved | no | ||
| Call Number | Admin @ si @ MMB2022 | Serial | 3701 | ||
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| Author | Javad Zolfaghari Bengar; Joost Van de Weijer; Laura Lopez-Fuentes; Bogdan Raducanu | ||||
| Title | Class-Balanced Active Learning for Image Classification | Type | Conference Article | ||
| Year | 2022 | Publication | Winter Conference on Applications of Computer Vision | Abbreviated Journal | |
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| Abstract | Active learning aims to reduce the labeling effort that is required to train algorithms by learning an acquisition function selecting the most relevant data for which a label should be requested from a large unlabeled data pool. Active learning is generally studied on balanced datasets where an equal amount of images per class is available. However, real-world datasets suffer from severe imbalanced classes, the so called long-tail distribution. We argue that this further complicates the active learning process, since the imbalanced data pool can result in suboptimal classifiers. To address this problem in the context of active learning, we proposed a general optimization framework that explicitly takes class-balancing into account. Results on three datasets showed that the method is general (it can be combined with most existing active learning algorithms) and can be effectively applied to boost the performance of both informative and representative-based active learning methods. In addition, we showed that also on balanced datasets
our method 1 generally results in a performance gain. |
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| Address | Virtual; Waikoloa; Hawai; USA; January 2022 | ||||
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| Area | Expedition | Conference | WACV | ||
| Notes | LAMP; 602.200; 600.147; 600.120 | Approved | no | ||
| Call Number | Admin @ si @ ZWL2022 | Serial | 3703 | ||
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| Author | Akhil Gurram | ||||
| Title | Monocular Depth Estimation for Autonomous Driving | Type | Book Whole | ||
| Year | 2022 | Publication | PhD Thesis, Universitat Autonoma de Barcelona-CVC | Abbreviated Journal | |
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| Abstract | 3D geometric information is essential for on-board perception in autonomous driving and driver assistance. Autonomous vehicles (AVs) are equipped with calibrated sensor suites. As part of these suites, we can find LiDARs, which are expensive active sensors in charge of providing the 3D geometric information. Depending on the operational conditions for the AV, calibrated stereo rigs may be also sufficient for obtaining 3D geometric information, being these rigs less expensive and easier to install than LiDARs. However, ensuring a proper maintenance and calibration of these types of sensors is not trivial. Accordingly, there is an increasing interest on performing monocular depth estimation (MDE) to obtain 3D geometric information on-board. MDE is very appealing since it allows for appearance and depth being on direct pixelwise correspondence without further calibration. Moreover, a set of single cameras with MDE capabilities would still be a cheap solution for on-board perception, relatively easy to integrate and maintain in an AV.
Best MDE models are based on Convolutional Neural Networks (CNNs) trained in a supervised manner, i.e., assuming pixelwise ground truth (GT). Accordingly, the overall goal of this PhD is to study methods for improving CNN-based MDE accuracy under different training settings. More specifically, this PhD addresses different research questions that are described below. When we started to work in this PhD, state-of-theart methods for MDE were already based on CNNs. In fact, a promising line of work consisted in using image-based semantic supervision (i.e., pixel-level class labels) while training CNNs for MDE using LiDAR-based supervision (i.e., depth). It was common practice to assume that the same raw training data are complemented by both types of supervision, i.e., with depth and semantic labels. However, in practice, it was more common to find heterogeneous datasets with either only depth supervision or only semantic supervision. Therefore, our first work was to research if we could train CNNs for MDE by leveraging depth and semantic information from heterogeneous datasets. We show that this is indeed possible, and we surpassed the state-of-the-art results on MDE at the time we did this research. To achieve our results, we proposed a particular CNN architecture and a new training protocol. After this research, it was clear that the upper-bound setting to train CNN-based MDE models consists in using LiDAR data as supervision. However, it would be cheaper and more scalable if we would be able to train such models from monocular sequences. Obviously, this is far more challenging, but worth to research. Training MDE models using monocular sequences is possible by relying on structure-from-motion (SfM) principles to generate self-supervision. Nevertheless, problems of camouflaged objects, visibility changes, static-camera intervals, textureless areas, and scale ambiguity, diminish the usefulness of such self-supervision. To alleviate these problems, we perform MDE by virtual-world supervision and real-world SfM self-supervision. We call our proposalMonoDEVSNet. We compensate the SfM self-supervision limitations by leveraging virtual-world images with accurate semantic and depth supervision, as well as addressing the virtual-to-real domain gap. MonoDEVSNet outperformed previous MDE CNNs trained on monocular and even stereo sequences. We have publicly released MonoDEVSNet at <https://github.com/HMRC-AEL/MonoDEVSNet>. Finally, since MDE is performed to produce 3D information for being used in downstream tasks related to on-board perception. We also address the question of whether the standard metrics for MDE assessment are a good indicator for future MDE-based driving-related perception tasks. By using 3D object detection on point clouds as proxy of on-board perception, we conclude that, indeed, MDE evaluation metrics give rise to a ranking of methods which reflects relatively well the 3D object detection results we may expect. |
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| Address | March, 2022 | ||||
| Corporate Author | Thesis | Ph.D. thesis | |||
| Publisher | IMPRIMA | Place of Publication | Editor | Antonio Lopez;Onay Urfalioglu | |
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| ISSN | ISBN | 978-84-124793-0-0 | Medium | ||
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| Notes | ADAS | Approved | no | ||
| Call Number | Admin @ si @ Gur2022 | Serial | 3712 | ||
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| Author | Parichehr Behjati Ardakani | ||||
| Title | Towards Efficient and Robust Convolutional Neural Networks for Single Image Super-Resolution | Type | Book Whole | ||
| Year | 2022 | Publication | PhD Thesis, Universitat Autonoma de Barcelona-CVC | Abbreviated Journal | |
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| Abstract | Single image super-resolution (SISR) is an important task in image processing which aims to enhance the resolution of imaging systems. Recently, SISR has witnessed great strides with the rapid development of deep learning. Recent advances in SISR are mostly devoted to designing deeper and wider networks to enhance their representation learning capacity. However, as the depth of networks increases, deep learning-based methods are faced with the challenge of computational complexity in practice. Moreover, most existing methods rarely leverage the intermediate features and also do not discriminate the computation of features by their frequencial components, thereby achieving relatively low performance. Aside from the aforementioned problems, another desired ability is to upsample images to arbitrary scales using a single model. Most current SISR methods train a dedicated model for each target resolution, losing generality and increasing memory requirements. In this thesis, we address the aforementioned issues and propose solutions to them: i) We present a novel frequency-based enhancement block which treats different frequencies in a heterogeneous way and also models inter-channel dependencies, which consequently enrich the output feature. Thus it helps the network generate more discriminative representations by explicitly recovering finer details. ii) We introduce OverNet which contains two main parts: a lightweight feature extractor that follows a novel recursive framework of skip and dense connections to reduce low-level feature degradation, and an overscaling module that generates an accurate SR image by internally constructing an overscaled intermediate representation of the output features. Then, to solve the problem of reconstruction at arbitrary scale factors, we introduce a novel multi-scale loss, that allows the simultaneous training of all scale factors using a single model. iii) We propose a directional variance attention network which leverages a novel attention mechanism to enhance features in different channels and spatial regions. Moreover, we introduce a novel procedure for using attention mechanisms together with residual blocks to facilitate the preservation of finer details. Finally, we demonstrate that our approaches achieve considerably better performance than previous state-of-the-art methods, in terms of both quantitative and visual quality. | ||||
| Address | April, 2022 | ||||
| Corporate Author | Thesis | Ph.D. thesis | |||
| Publisher | Place of Publication | Editor | Jordi Gonzalez;Xavier Roca;Pau Rodriguez | ||
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| ISSN | ISBN | 978-84-124793-1-7 | Medium | ||
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| Notes | ISE | Approved | no | ||
| Call Number | Admin @ si @ Beh2022 | Serial | 3713 | ||
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| Author | Kai Wang | ||||
| Title | Continual learning for hierarchical classification, few-shot recognition, and multi-modal learning | Type | Book Whole | ||
| Year | 2022 | Publication | PhD Thesis, Universitat Autonoma de Barcelona-CVC | Abbreviated Journal | |
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| Abstract | Deep learning has drastically changed computer vision in the past decades and achieved great success in many applications, such as image classification, retrieval, detection, and segmentation thanks to the emergence of neural networks. Typically, for most applications, these networks are presented with examples from all tasks they are expected to perform. However, for many applications, this is not a realistic
scenario, and an algorithm is required to learn tasks sequentially. Continual learning proposes theory and methods for this scenario. The main challenge for continual learning systems is called catastrophic forgetting and refers to a significant drop in performance on previous tasks. To tackle this problem, three main branches of methods have been explored to alleviate the forgetting in continual learning. They are regularization-based methods, rehearsalbased methods, and parameter isolation-based methods. However, most of them are focused on image classification tasks. Continual learning of many computer vision fields has still not been well-explored. Thus, in this thesis, we extend the continual learning knowledge to meta learning, we propose a method for the incremental learning of hierarchical relations for image classification, we explore image recognition in online continual learning, and study continual learning for cross-modal learning. In this thesis, we explore the usage of image rehearsal when addressing the incremental meta learning problem. Observing that existingmethods fail to improve performance with saved exemplars, we propose to mix exemplars with current task data and episode-level distillation to overcome forgetting in incremental meta learning. Next, we study a more realistic image classification scenario where each class has multiple granularity levels. Only one label is present at any time, which requires the model to infer if the provided label has a hierarchical relation with any already known label. In experiments, we show that the estimated hierarchy information can be beneficial in both the training and inference stage. For the online continual learning setting, we investigate the usage of intermediate feature replay. In this case, the training samples are only observed by the model only one time. Here we fix thememory buffer for feature replay and compare the effectiveness of saving features from different layers. Finally, we investigate multi-modal continual learning, where an image encoder is cooperating with a semantic branch. We consider the continual learning of both zero-shot learning and cross-modal retrieval problems. |
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| Address | July, 2022 | ||||
| Corporate Author | Thesis | Ph.D. thesis | |||
| Publisher | Place of Publication | Editor | Luis Herranz;Joost Van de Weijer | ||
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| ISSN | ISBN | 978-84-124793-2-4 | Medium | ||
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| Notes | LAMP | Approved | no | ||
| Call Number | Admin @ si @ Wan2022 | Serial | 3714 | ||
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| Author | Idoia Ruiz | ||||
| Title | Deep Metric Learning for re-identification, tracking and hierarchical novelty detection | Type | Book Whole | ||
| Year | 2022 | Publication | PhD Thesis, Universitat Autonoma de Barcelona-CVC | Abbreviated Journal | |
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| Abstract | Metric learning refers to the problem in machine learning of learning a distance or similarity measurement to compare data. In particular, deep metric learning involves learning a representation, also referred to as embedding, such that in the embedding space data samples can be compared based on the distance, directly providing a similarity measure. This step is necessary to perform several tasks in computer vision. It allows to perform the classification of images, regions or pixels, re-identification, out-of-distribution detection, object tracking in image sequences and any other task that requires computing a similarity score for their solution. This thesis addresses three specific problems that share this common requirement. The first one is person re-identification. Essentially, it is an image retrieval task that aims at finding instances of the same person according to a similarity measure. We first compare in terms of accuracy and efficiency, classical metric learning to basic deep learning based methods for this problem. In this context, we also study network distillation as a strategy to optimize the trade-off between accuracy and speed at inference time. The second problem we contribute to is novelty detection in image classification. It consists in detecting samples of novel classes, i.e. never seen during training. However, standard novelty detection does not provide any information about the novel samples besides they are unknown. Aiming at more informative outputs, we take advantage from the hierarchical taxonomies that are intrinsic to the classes. We propose a metric learning based approach that leverages the hierarchical relationships among classes during training, being able to predict the parent class for a novel sample in such hierarchical taxonomy. Our third contribution is in multi-object tracking and segmentation. This joint task comprises classification, detection, instance segmentation and tracking. Tracking can be formulated as a retrieval problem to be addressed with metric learning approaches. We tackle the existing difficulty in academic research that is the lack of annotated benchmarks for this task. To this matter, we introduce the problem of weakly supervised multi-object tracking and segmentation, facing the challenge of not having available ground truth for instance segmentation. We propose a synergistic training strategy that benefits from the knowledge of the supervised tasks that are being learnt simultaneously. | ||||
| Address | July, 2022 | ||||
| Corporate Author | Thesis | Ph.D. thesis | |||
| Publisher | Place of Publication | Editor | Joan Serrat | ||
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| ISSN | ISBN | 978-84-124793-4-8 | Medium | ||
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| Notes | ADAS | Approved | no | ||
| Call Number | Admin @ si @ Rui2022 | Serial | 3717 | ||
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| Author | Mireia Sole; Joan Blanco; Debora Gil; Oliver Valero; B. Cardenas; G. Fonseka; E. Anton; Alvaro Pascual; Richard Frodsham; Zaida Sarrate | ||||
| Title | Time to match; when do homologous chromosomes become closer? | Type | Journal Article | ||
| Year | 2022 | Publication | Chromosoma | Abbreviated Journal | CHRO |
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| Abstract | In most eukaryotes, pairing of homologous chromosomes is an essential feature of meiosis that ensures homologous recombination and segregation. However, when the pairing process begins, it is still under investigation. Contrasting data exists in Mus musculus, since both leptotene DSB-dependent and preleptotene DSB-independent mechanisms have been described. To unravel this contention, we examined homologous pairing in pre-meiotic and meiotic Mus musculus cells using a threedimensional fuorescence in situ hybridization-based protocol, which enables the analysis of the entire karyotype using DNA painting probes. Our data establishes in an unambiguously manner that 73.83% of homologous chromosomes are already paired at premeiotic stages (spermatogonia-early preleptotene spermatocytes). The percentage of paired homologous chromosomes increases to 84.60% at mid-preleptotene-zygotene stage, reaching 100% at pachytene stage. Importantly, our results demonstrate a high percentage of homologous pairing observed before the onset of meiosis; this pairing does not occur randomly, as the percentage was higher than that observed in somatic cells (19.47%) and between nonhomologous chromosomes (41.1%). Finally, we have also observed that premeiotic homologous pairing is asynchronous and independent of the chromosome size, GC content, or presence of NOR regions. | ||||
| Address | August, 2022 | ||||
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| Notes | IAM; 601.139; 600.145; 600.096 | Approved | no | ||
| Call Number | Admin @ si @ SBG2022 | Serial | 3719 | ||
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| Author | Debora Gil; Aura Hernandez-Sabate; Julien Enconniere; Saryani Asmayawati; Pau Folch; Juan Borrego-Carazo; Miquel Angel Piera | ||||
| Title | E-Pilots: A System to Predict Hard Landing During the Approach Phase of Commercial Flights | Type | Journal Article | ||
| Year | 2022 | Publication | IEEE Access | Abbreviated Journal | ACCESS |
| Volume | 10 | Issue | Pages | 7489-7503 | |
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| Abstract | More than half of all commercial aircraft operation accidents could have been prevented by executing a go-around. Making timely decision to execute a go-around manoeuvre can potentially reduce overall aviation industry accident rate. In this paper, we describe a cockpit-deployable machine learning system to support flight crew go-around decision-making based on the prediction of a hard landing event.
This work presents a hybrid approach for hard landing prediction that uses features modelling temporal dependencies of aircraft variables as inputs to a neural network. Based on a large dataset of 58177 commercial flights, the results show that our approach has 85% of average sensitivity with 74% of average specificity at the go-around point. It follows that our approach is a cockpit-deployable recommendation system that outperforms existing approaches. |
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| Notes | IAM; 600.139; 600.118; 600.145 | Approved | no | ||
| Call Number | Admin @ si @ GHE2022 | Serial | 3721 | ||
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| Author | Mohamed Ali Souibgui; Alicia Fornes; Yousri Kessentini; Beata Megyesi | ||||
| Title | Few shots are all you need: A progressive learning approach for low resource handwritten text recognition | Type | Journal Article | ||
| Year | 2022 | Publication | Pattern Recognition Letters | Abbreviated Journal | PRL |
| Volume | 160 | Issue | Pages | 43-49 | |
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| Abstract | Handwritten text recognition in low resource scenarios, such as manuscripts with rare alphabets, is a challenging problem. In this paper, we propose a few-shot learning-based handwriting recognition approach that significantly reduces the human annotation process, by requiring only a few images of each alphabet symbols. The method consists of detecting all the symbols of a given alphabet in a textline image and decoding the obtained similarity scores to the final sequence of transcribed symbols. Our model is first pretrained on synthetic line images generated from an alphabet, which could differ from the alphabet of the target domain. A second training step is then applied to reduce the gap between the source and the target data. Since this retraining would require annotation of thousands of handwritten symbols together with their bounding boxes, we propose to avoid such human effort through an unsupervised progressive learning approach that automatically assigns pseudo-labels to the unlabeled data. The evaluation on different datasets shows that our model can lead to competitive results with a significant reduction in human effort. The code will be publicly available in the following repository: https://github.com/dali92002/HTRbyMatching | ||||
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| Publisher | Elsevier | Place of Publication | Editor | ||
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| Notes | DAG; 600.121; 600.162; 602.230 | Approved | no | ||
| Call Number | Admin @ si @ SFK2022 | Serial | 3736 | ||
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| Author | Penny Tarling; Mauricio Cantor; Albert Clapes; Sergio Escalera | ||||
| Title | Deep learning with self-supervision and uncertainty regularization to count fish in underwater images | Type | Journal Article | ||
| Year | 2022 | Publication | PloS One | Abbreviated Journal | Plos |
| Volume | 17 | Issue | 5 | Pages | e0267759 |
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| Abstract | Effective conservation actions require effective population monitoring. However, accurately counting animals in the wild to inform conservation decision-making is difficult. Monitoring populations through image sampling has made data collection cheaper, wide-reaching and less intrusive but created a need to process and analyse this data efficiently. Counting animals from such data is challenging, particularly when densely packed in noisy images. Attempting this manually is slow and expensive, while traditional computer vision methods are limited in their generalisability. Deep learning is the state-of-the-art method for many computer vision tasks, but it has yet to be properly explored to count animals. To this end, we employ deep learning, with a density-based regression approach, to count fish in low-resolution sonar images. We introduce a large dataset of sonar videos, deployed to record wild Lebranche mullet schools (Mugil liza), with a subset of 500 labelled images. We utilise abundant unlabelled data in a self-supervised task to improve the supervised counting task. For the first time in this context, by introducing uncertainty quantification, we improve model training and provide an accompanying measure of prediction uncertainty for more informed biological decision-making. Finally, we demonstrate the generalisability of our proposed counting framework through testing it on a recent benchmark dataset of high-resolution annotated underwater images from varying habitats (DeepFish). From experiments on both contrasting datasets, we demonstrate our network outperforms the few other deep learning models implemented for solving this task. By providing an open-source framework along with training data, our study puts forth an efficient deep learning template for crowd counting aquatic animals thereby contributing effective methods to assess natural populations from the ever-increasing visual data. | ||||
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| Publisher | Public Library of Science | Place of Publication | Editor | ||
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| Notes | HuPBA | Approved | no | ||
| Call Number | Admin @ si @ TCC2022 | Serial | 3743 | ||
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| Author | Yecong Wan; Yuanshuo Cheng; Miingwen Shao; Jordi Gonzalez | ||||
| Title | Image rain removal and illumination enhancement done in one go | Type | Journal Article | ||
| Year | 2022 | Publication | Knowledge-Based Systems | Abbreviated Journal | KBS |
| Volume | 252 | Issue | Pages | 109244 | |
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| Abstract | Rain removal plays an important role in the restoration of degraded images. Recently, CNN-based methods have achieved remarkable success. However, these approaches neglect that the appearance of real-world rain is often accompanied by low light conditions, which will further degrade the image quality, thereby hindering the restoration mission. Therefore, it is very indispensable to jointly remove the rain and enhance illumination for real-world rain image restoration. To this end, we proposed a novel spatially-adaptive network, dubbed SANet, which can remove the rain and enhance illumination in one go with the guidance of degradation mask. Meanwhile, to fully utilize negative samples, a contrastive loss is proposed to preserve more natural textures and consistent illumination. In addition, we present a new synthetic dataset, named DarkRain, to boost the development of rain image restoration algorithms in practical scenarios. DarkRain not only contains different degrees of rain, but also considers different lighting conditions, and more realistically simulates real-world rainfall scenarios. SANet is extensively evaluated on the proposed dataset and attains new state-of-the-art performance against other combining methods. Moreover, after a simple transformation, our SANet surpasses existing the state-of-the-art algorithms in both rain removal and low-light image enhancement. | ||||
| Address | Sept 2022 | ||||
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| Publisher | Elsevier | Place of Publication | Editor | ||
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| Notes | ISE; 600.157; 600.168 | Approved | no | ||
| Call Number | Admin @ si @ WCS2022 | Serial | 3744 | ||
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| Author | Victor M. Campello; Carlos Martin-Isla; Cristian Izquierdo; Andrea Guala; Jose F. Rodriguez Palomares; David Vilades; Martin L. Descalzo; Mahir Karakas; Ersin Cavus; Zahra Zahra Raisi-Estabragh; Steffen E. Petersen; Sergio Escalera; Santiago Segui; Karim Lekadir | ||||
| Title | Minimising multi-centre radiomics variability through image normalisation: a pilot study | Type | Journal Article | ||
| Year | 2022 | Publication | Scientific Reports | Abbreviated Journal | ScR |
| Volume | 12 | Issue | 1 | Pages | 12532 |
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| Abstract | Radiomics is an emerging technique for the quantification of imaging data that has recently shown great promise for deeper phenotyping of cardiovascular disease. Thus far, the technique has been mostly applied in single-centre studies. However, one of the main difficulties in multi-centre imaging studies is the inherent variability of image characteristics due to centre differences. In this paper, a comprehensive analysis of radiomics variability under several image- and feature-based normalisation techniques was conducted using a multi-centre cardiovascular magnetic resonance dataset. 218 subjects divided into healthy (n = 112) and hypertrophic cardiomyopathy (n = 106, HCM) groups from five different centres were considered. First and second order texture radiomic features were extracted from three regions of interest, namely the left and right ventricular cavities and the left ventricular myocardium. Two methods were used to assess features’ variability. First, feature distributions were compared across centres to obtain a distribution similarity index. Second, two classification tasks were proposed to assess: (1) the amount of centre-related information encoded in normalised features (centre identification) and (2) the generalisation ability for a classification model when trained on these features (healthy versus HCM classification). The results showed that the feature-based harmonisation technique ComBat is able to remove the variability introduced by centre information from radiomic features, at the expense of slightly degrading classification performance. Piecewise linear histogram matching normalisation gave features with greater generalisation ability for classification ( balanced accuracy in between 0.78 ± 0.08 and 0.79 ± 0.09). Models trained with features from images without normalisation showed the worst performance overall ( balanced accuracy in between 0.45 ± 0.28 and 0.60 ± 0.22). In conclusion, centre-related information removal did not imply good generalisation ability for classification. | ||||
| Address | 2022/07/22 | ||||
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| Publisher | Springer Nature | Place of Publication | Editor | ||
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| Notes | HuPBA | Approved | no | ||
| Call Number | Admin @ si @ CMI2022 | Serial | 3749 | ||
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| Author | Ana Garcia Rodriguez; Yael Tudela; Henry Cordova; S. Carballal; I. Ordas; L. Moreira; E. Vaquero; O. Ortiz; L. Rivero; F. Javier Sanchez; Miriam Cuatrecasas; Maria Pellise; Jorge Bernal; Gloria Fernandez Esparrach | ||||
| Title | In vivo computer-aided diagnosis of colorectal polyps using white light endoscopy | Type | Journal Article | ||
| Year | 2022 | Publication | Endoscopy International Open | Abbreviated Journal | ENDIO |
| Volume | 10 | Issue | 9 | Pages | E1201-E1207 |
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| Abstract | Background and study aims Artificial intelligence is currently able to accurately predict the histology of colorectal polyps. However, systems developed to date use complex optical technologies and have not been tested in vivo. The objective of this study was to evaluate the efficacy of a new deep learning-based optical diagnosis system, ATENEA, in a real clinical setting using only high-definition white light endoscopy (WLE) and to compare its performance with endoscopists. Methods ATENEA was prospectively tested in real life on consecutive polyps detected in colorectal cancer screening colonoscopies at Hospital Clínic. No images were discarded, and only WLE was used. The in vivo ATENEA's prediction (adenoma vs non-adenoma) was compared with the prediction of four staff endoscopists without specific training in optical diagnosis for the study purposes. Endoscopists were blind to the ATENEA output. Histology was the gold standard. Results Ninety polyps (median size: 5 mm, range: 2-25) from 31 patients were included of which 69 (76.7 %) were adenomas. ATENEA correctly predicted the histology in 63 of 69 (91.3 %, 95 % CI: 82 %-97 %) adenomas and 12 of 21 (57.1 %, 95 % CI: 34 %-78 %) non-adenomas while endoscopists made correct predictions in 52 of 69 (75.4 %, 95 % CI: 60 %-85 %) and 20 of 21 (95.2 %, 95 % CI: 76 %-100 %), respectively. The global accuracy was 83.3 % (95 % CI: 74%-90 %) and 80 % (95 % CI: 70 %-88 %) for ATENEA and endoscopists, respectively. Conclusion ATENEA can accurately be used for in vivo characterization of colorectal polyps, enabling the endoscopist to make direct decisions. ATENEA showed a global accuracy similar to that of endoscopists despite an unsatisfactory performance for non-adenomatous lesions. | ||||
| Address | 2022 Sep 14 | ||||
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| Publisher | PMID | Place of Publication | Editor | ||
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| Notes | ISE; 600.157 | Approved | no | ||
| Call Number | Admin @ si @ GTC2022b | Serial | 3752 | ||
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