Pau Cano, Alvaro Caravaca, Debora Gil, & Eva Musulen. (2023). Diagnosis of Helicobacter pylori using AutoEncoders for the Detection of Anomalous Staining Patterns in Immunohistochemistry Images.
Abstract: This work addresses the detection of Helicobacter pylori a bacterium classified since 1994 as class 1 carcinogen to humans. By its highest specificity and sensitivity, the preferred diagnosis technique is the analysis of histological images with immunohistochemical staining, a process in which certain stained antibodies bind to antigens of the biological element of interest. This analysis is a time demanding task, which is currently done by an expert pathologist that visually inspects the digitized samples.
We propose to use autoencoders to learn latent patterns of healthy tissue and detect H. pylori as an anomaly in image staining. Unlike existing classification approaches, an autoencoder is able to learn patterns in an unsupervised manner (without the need of image annotations) with high performance. In particular, our model has an overall 91% of accuracy with 86\% sensitivity, 96% specificity and 0.97 AUC in the detection of H. pylori.
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Mohamed Ali Souibgui, Asma Bensalah, Jialuo Chen, Alicia Fornes, & Michelle Waldispühl. (2023). A User Perspective on HTR methods for the Automatic Transcription of Rare Scripts: The Case of Codex Runicus Just Accepted. JOCCH - ACM Journal on Computing and Cultural Heritage, 15(4), 1–18.
Abstract: Recent breakthroughs in Artificial Intelligence, Deep Learning and Document Image Analysis and Recognition have significantly eased the creation of digital libraries and the transcription of historical documents. However, for documents in rare scripts with few labelled training data available, current Handwritten Text Recognition (HTR) systems are too constraint. Moreover, research on HTR often focuses on technical aspects only, and rarely puts emphasis on implementing software tools for scholars in Humanities. In this article, we describe, compare and analyse different transcription methods for rare scripts. We evaluate their performance in a real use case of a medieval manuscript written in the runic script (Codex Runicus) and discuss advantages and disadvantages of each method from the user perspective. From this exhaustive analysis and comparison with a fully manual transcription, we raise conclusions and provide recommendations to scholars interested in using automatic transcription tools.
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Guillermo Torres, Debora Gil, Antoni Rosell, S. Mena, & Carles Sanchez. (2023). Virtual Radiomics Biopsy for the Histological Diagnosis of Pulmonary Nodules – Intermediate Results of the RadioLung Project. IJCARS - International Journal of Computer Assisted Radiology and Surgery, .
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Kunal Biswas, Palaiahnakote Shivakumara, Umapada Pal, Tong Lu, Michel Blumenstein, & Josep Llados. (2023). Classification of aesthetic natural scene images using statistical and semantic features. MTAP - Multimedia Tools and Applications, 82(9), 13507–13532.
Abstract: Aesthetic image analysis is essential for improving the performance of multimedia image retrieval systems, especially from a repository of social media and multimedia content stored on mobile devices. This paper presents a novel method for classifying aesthetic natural scene images by studying the naturalness of image content using statistical features, and reading text in the images using semantic features. Unlike existing methods that focus only on image quality with human information, the proposed approach focuses on image features as well as text-based semantic features without human intervention to reduce the gap between subjectivity and objectivity in the classification. The aesthetic classes considered in this work are (i) Very Pleasant, (ii) Pleasant, (iii) Normal and (iv) Unpleasant. The naturalness is represented by features of focus, defocus, perceived brightness, perceived contrast, blurriness and noisiness, while semantics are represented by text recognition, description of the images and labels of images, profile pictures, and banner images. Furthermore, a deep learning model is proposed in a novel way to fuse statistical and semantic features for the classification of aesthetic natural scene images. Experiments on our own dataset and the standard datasets demonstrate that the proposed approach achieves 92.74%, 88.67% and 83.22% average classification rates on our own dataset, AVA dataset and CUHKPQ dataset, respectively. Furthermore, a comparative study of the proposed model with the existing methods shows that the proposed method is effective for the classification of aesthetic social media images.
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Asma Bensalah, Antonio Parziale, Giuseppe De Gregorio, Angelo Marcelli, Alicia Fornes, & Josep Llados. (2023). I Can’t Believe It’s Not Better: In-air Movement for Alzheimer Handwriting Synthetic Generation. In 21st International Graphonomics Conference (136–148).
Abstract: During recent years, there here has been a boom in terms of deep learning use for handwriting analysis and recognition. One main application for handwriting analysis is early detection and diagnosis in the health field. Unfortunately, most real case problems still suffer a scarcity of data, which makes difficult the use of deep learning-based models. To alleviate this problem, some works resort to synthetic data generation. Lately, more works are directed towards guided data synthetic generation, a generation that uses the domain and data knowledge to generate realistic data that can be useful to train deep learning models. In this work, we combine the domain knowledge about the Alzheimer’s disease for handwriting and use it for a more guided data generation. Concretely, we have explored the use of in-air movements for synthetic data generation.
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Simone Zini, Alex Gomez-Villa, Marco Buzzelli, Bartlomiej Twardowski, Andrew D. Bagdanov, & Joost Van de Weijer. (2023). Planckian Jitter: countering the color-crippling effects of color jitter on self-supervised training. In 11th International Conference on Learning Representations.
Abstract: Several recent works on self-supervised learning are trained by mapping different augmentations of the same image to the same feature representation. The data augmentations used are of crucial importance to the quality of learned feature representations. In this paper, we analyze how the color jitter traditionally used in data augmentation negatively impacts the quality of the color features in learned feature representations. To address this problem, we propose a more realistic, physics-based color data augmentation – which we call Planckian Jitter – that creates realistic variations in chromaticity and produces a model robust to illumination changes that can be commonly observed in real life, while maintaining the ability to discriminate image content based on color information. Experiments confirm that such a representation is complementary to the representations learned with the currently-used color jitter augmentation and that a simple concatenation leads to significant performance gains on a wide range of downstream datasets. In addition, we present a color sensitivity analysis that documents the impact of different training methods on model neurons and shows that the performance of the learned features is robust with respect to illuminant variations.
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Ruben Tito, Dimosthenis Karatzas, & Ernest Valveny. (2023). Hierarchical multimodal transformers for Multi-Page DocVQA. PR - Pattern Recognition, 144, 109834.
Abstract: Document Visual Question Answering (DocVQA) refers to the task of answering questions from document images. Existing work on DocVQA only considers single-page documents. However, in real scenarios documents are mostly composed of multiple pages that should be processed altogether. In this work we extend DocVQA to the multi-page scenario. For that, we first create a new dataset, MP-DocVQA, where questions are posed over multi-page documents instead of single pages. Second, we propose a new hierarchical method, Hi-VT5, based on the T5 architecture, that overcomes the limitations of current methods to process long multi-page documents. The proposed method is based on a hierarchical transformer architecture where the encoder summarizes the most relevant information of every page and then, the decoder takes this summarized information to generate the final answer. Through extensive experimentation, we demonstrate that our method is able, in a single stage, to answer the questions and provide the page that contains the relevant information to find the answer, which can be used as a kind of explainability measure.
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Souhail Bakkali, Zuheng Ming, Mickael Coustaty, Marçal Rusiñol, & Oriol Ramos Terrades. (2023). VLCDoC: Vision-Language Contrastive Pre-Training Model for Cross-Modal Document Classification. PR - Pattern Recognition, 139, 109419.
Abstract: Multimodal learning from document data has achieved great success lately as it allows to pre-train semantically meaningful features as a prior into a learnable downstream approach. In this paper, we approach the document classification problem by learning cross-modal representations through language and vision cues, considering intra- and inter-modality relationships. Instead of merging features from different modalities into a common representation space, the proposed method exploits high-level interactions and learns relevant semantic information from effective attention flows within and across modalities. The proposed learning objective is devised between intra- and inter-modality alignment tasks, where the similarity distribution per task is computed by contracting positive sample pairs while simultaneously contrasting negative ones in the common feature representation space}. Extensive experiments on public document classification datasets demonstrate the effectiveness and the generalization capacity of our model on both low-scale and large-scale datasets.
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German Barquero, Sergio Escalera, & Cristina Palmero. (2023). BeLFusion: Latent Diffusion for Behavior-Driven Human Motion Prediction. In IEEE/CVF International Conference on Computer Vision (ICCV) Workshops (pp. 2317–2327).
Abstract: Stochastic human motion prediction (HMP) has generally been tackled with generative adversarial networks and variational autoencoders. Most prior works aim at predicting highly diverse movements in terms of the skeleton joints’ dispersion. This has led to methods predicting fast and motion-divergent movements, which are often unrealistic and incoherent with past motion. Such methods also neglect contexts that need to anticipate diverse low-range behaviors, or actions, with subtle joint displacements. To address these issues, we present BeLFusion, a model that, for the first time, leverages latent diffusion models in HMP to sample from a latent space where behavior is disentangled from pose and motion. As a result, diversity is encouraged from a behavioral perspective. Thanks to our behavior
coupler’s ability to transfer sampled behavior to ongoing motion, BeLFusion’s predictions display a variety of behaviors that are significantly more realistic than the state of the art. To support it, we introduce two metrics, the Area of
the Cumulative Motion Distribution, and the Average Pairwise Distance Error, which are correlated to our definition of realism according to a qualitative study with 126 participants. Finally, we prove BeLFusion’s generalization power in a new cross-dataset scenario for stochastic HMP.
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Ruben Tito, Dimosthenis Karatzas, & Ernest Valveny. (2023). Hierarchical multimodal transformers for Multipage DocVQA. PR - Pattern Recognition, 144(109834).
Abstract: Existing work on DocVQA only considers single-page documents. However, in real applications documents are mostly composed of multiple pages that should be processed altogether. In this work, we propose a new multimodal hierarchical method Hi-VT5, that overcomes the limitations of current methods to process long multipage documents. In contrast to previous hierarchical methods that focus on different semantic granularity (He et al., 2021) or different subtasks (Zhou et al., 2022) used in image classification. Our method is a hierarchical transformer architecture where the encoder learns to summarize the most relevant information of every page and then, the decoder uses this summarized representation to generate the final answer, following a bottom-up approach. Moreover, due to the lack of multipage DocVQA datasets, we also introduce MP-DocVQA, an extension of SP-DocVQA where questions are posed over multipage documents instead of single pages. Through extensive experimentation, we demonstrate that Hi-VT5 is able, in a single stage, to answer the questions and provide the page that contains the answer, which can be used as a kind of explainability measure.
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Benjia Zhou, Zhigang Chen, Albert Clapes, Jun Wan, Yanyan Liang, Sergio Escalera, et al. (2023). Gloss-free Sign Language Translation: Improving from Visual-Language Pretraining. In IEEE/CVF International Conference on Computer Vision (ICCV) Workshops.
Abstract: Sign Language Translation (SLT) is a challenging task due to its cross-domain nature, involving the translation of visual-gestural language to text. Many previous methods employ an intermediate representation, i.e., gloss sequences, to facilitate SLT, thus transforming it into a two-stage task of sign language recognition (SLR) followed by sign language translation (SLT). However, the scarcity of gloss-annotated sign language data, combined with the information bottleneck in the mid-level gloss representation, has hindered the further development of the SLT task. To address this challenge, we propose a novel Gloss-Free SLT based on Visual-Language Pretraining (GFSLT-VLP), which improves SLT by inheriting language-oriented prior knowledge from pre-trained models, without any gloss annotation assistance. Our approach involves two stages: (i) integrating Contrastive Language-Image Pre-training (CLIP) with masked self-supervised learning to create pre-tasks that bridge the semantic gap between visual and textual representations and restore masked sentences, and (ii) constructing an end-to-end architecture with an encoder-decoder-like structure that inherits the parameters of the pre-trained Visual Encoder and Text Decoder from the first stage. The seamless combination of these novel designs forms a robust sign language representation and significantly improves gloss-free sign language translation. In particular, we have achieved unprecedented improvements in terms of BLEU-4 score on the PHOENIX14T dataset (>+5) and the CSL-Daily dataset (>+3) compared to state-of-the-art gloss-free SLT methods. Furthermore, our approach also achieves competitive results on the PHOENIX14T dataset when compared with most of the gloss-based methods.
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Matthias Eisenmann, Annika Reinke, Vivienn Weru, Minu D. Tizabi, Fabian Isensee, Tim J. Adler, et al. (2023). Why Is the Winner the Best? In Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (pp. 19955–19966).
Abstract: International benchmarking competitions have become fundamental for the comparative performance assessment of image analysis methods. However, little attention has been given to investigating what can be learnt from these competitions. Do they really generate scientific progress? What are common and successful participation strategies? What makes a solution superior to a competing method? To address this gap in the literature, we performed a multi-center study with all 80 competitions that were conducted in the scope of IEEE ISBI 2021 and MICCAI 2021. Statistical analyses performed based on comprehensive descriptions of the submitted algorithms linked to their rank as well as the underlying participation strategies revealed common characteristics of winning solutions. These typically include the use of multi-task learning (63%) and/or multi-stage pipelines (61%), and a focus on augmentation (100%), image preprocessing (97%), data curation (79%), and postprocessing (66%). The “typical” lead of a winning team is a computer scientist with a doctoral degree, five years of experience in biomedical image analysis, and four years of experience in deep learning. Two core general development strategies stood out for highly-ranked teams: the reflection of the metrics in the method design and the focus on analyzing and handling failure cases. According to the organizers, 43% of the winning algorithms exceeded the state of the art but only 11% completely solved the respective domain problem. The insights of our study could help researchers (1) improve algorithm development strategies when approaching new problems, and (2) focus on open research questions revealed by this work.
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Eduardo Aguilar, Bogdan Raducanu, Petia Radeva, & Joost Van de Weijer. (2023). Continual Evidential Deep Learning for Out-of-Distribution Detection. In IEEE/CVF International Conference on Computer Vision (ICCV) Workshops -Visual Continual Learning workshop (pp. 3444–3454).
Abstract: Uncertainty-based deep learning models have attracted a great deal of interest for their ability to provide accurate and reliable predictions. Evidential deep learning stands out achieving remarkable performance in detecting out-of-distribution (OOD) data with a single deterministic neural network. Motivated by this fact, in this paper we propose the integration of an evidential deep learning method into a continual learning framework in order to perform simultaneously incremental object classification and OOD detection. Moreover, we analyze the ability of vacuity and dissonance to differentiate between in-distribution data belonging to old classes and OOD data. The proposed method, called CEDL, is evaluated on CIFAR-100 considering two settings consisting of 5 and 10 tasks, respectively. From the obtained results, we could appreciate that the proposed method, in addition to provide comparable results in object classification with respect to the baseline, largely outperforms OOD detection compared to several posthoc methods on three evaluation metrics: AUROC, AUPR and FPR95.
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Roberto Morales, Juan Quispe, & Eduardo Aguilar. (2023). Exploring multi-food detection using deep learning-based algorithms. In 13th International Conference on Pattern Recognition Systems (pp. 1–7).
Abstract: People are becoming increasingly concerned about their diet, whether for disease prevention, medical treatment or other purposes. In meals served in restaurants, schools or public canteens, it is not easy to identify the ingredients and/or the nutritional information they contain. Currently, technological solutions based on deep learning models have facilitated the recording and tracking of food consumed based on the recognition of the main dish present in an image. Considering that sometimes there may be multiple foods served on the same plate, food analysis should be treated as a multi-class object detection problem. EfficientDet and YOLOv5 are object detection algorithms that have demonstrated high mAP and real-time performance on general domain data. However, these models have not been evaluated and compared on public food datasets. Unlike general domain objects, foods have more challenging features inherent in their nature that increase the complexity of detection. In this work, we performed a performance evaluation of Efficient-Det and YOLOv5 on three public food datasets: UNIMIB2016, UECFood256 and ChileanFood64. From the results obtained, it can be seen that YOLOv5 provides a significant difference in terms of both mAP and response time compared to EfficientDet in all datasets. Furthermore, YOLOv5 outperforms the state-of-the-art on UECFood256, achieving an improvement of more than 4% in terms of mAP@.50 over the best reported.
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Bhalaji Nagarajan, Marc Bolaños, Eduardo Aguilar, & Petia Radeva. (2023). Deep ensemble-based hard sample mining for food recognition. JVCIR - Journal of Visual Communication and Image Representation, 95, 103905.
Abstract: Deep neural networks represent a compelling technique to tackle complex real-world problems, but are over-parameterized and often suffer from over- or under-confident estimates. Deep ensembles have shown better parameter estimations and often provide reliable uncertainty estimates that contribute to the robustness of the results. In this work, we propose a new metric to identify samples that are hard to classify. Our metric is defined as coincidence score for deep ensembles which measures the agreement of its individual models. The main hypothesis we rely on is that deep learning algorithms learn the low-loss samples better compared to large-loss samples. In order to compensate for this, we use controlled over-sampling on the identified ”hard” samples using proper data augmentation schemes to enable the models to learn those samples better. We validate the proposed metric using two public food datasets on different backbone architectures and show the improvements compared to the conventional deep neural network training using different performance metrics.
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