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Author David Roche; Debora Gil; Jesus Giraldo edit  doi
openurl 
  Title Mechanistic analysis of the function of agonists and allosteric modulators: Reconciling two-state and operational models Type Journal Article
  Year 2013 Publication British Journal of Pharmacology Abbreviated Journal BJP  
  Volume 169 Issue (down) 6 Pages 1189-202  
  Keywords  
  Abstract Two-state and operational models of both agonism and allosterism are compared to identify and characterize common pharmacological parameters. To account for the receptor-dependent basal response, constitutive receptor activity is considered in the operational models. By arranging two-state models as the fraction of active receptors and operational models as the fractional response relative to the maximum effect of the system, a one-by-one correspondence between parameters is found. The comparative analysis allows a better understanding of complex allosteric interactions. In particular, the inclusion of constitutive receptor activity in the operational model of allosterism allows the characterization of modulators able to lower the basal response of the system; that is, allosteric modulators with negative intrinsic efficacy. Theoretical simulations and overall goodness of fit of the models to simulated data suggest that it is feasible to apply the models to experimental data and constitute one step forward in receptor theory formalism.  
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  Notes IAM; 600.044; 605.203 Approved no  
  Call Number IAM @ iam @ RGG2013b Serial 2195  
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Author Francesco Ciompi; Oriol Pujol; Petia Radeva edit  doi
openurl 
  Title ECOC-DRF: Discriminative random fields based on error correcting output codes Type Journal Article
  Year 2014 Publication Pattern Recognition Abbreviated Journal PR  
  Volume 47 Issue (down) 6 Pages 2193-2204  
  Keywords Discriminative random fields; Error-correcting output codes; Multi-class classification; Graphical models  
  Abstract We present ECOC-DRF, a framework where potential functions for Discriminative Random Fields are formulated as an ensemble of classifiers. We introduce the label trick, a technique to express transitions in the pairwise potential as meta-classes. This allows to independently learn any possible transition between labels without assuming any pre-defined model. The Error Correcting Output Codes matrix is used as ensemble framework for the combination of margin classifiers. We apply ECOC-DRF to a large set of classification problems, covering synthetic, natural and medical images for binary and multi-class cases, outperforming state-of-the art in almost all the experiments.  
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  Notes LAMP; HuPBA; MILAB; 605.203; 600.046; 601.043; 600.079 Approved no  
  Call Number Admin @ si @ CPR2014b Serial 2470  
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Author Fahad Shahbaz Khan; Shida Beigpour; Joost Van de Weijer; Michael Felsberg edit  doi
openurl 
  Title Painting-91: A Large Scale Database for Computational Painting Categorization Type Journal Article
  Year 2014 Publication Machine Vision and Applications Abbreviated Journal MVAP  
  Volume 25 Issue (down) 6 Pages 1385-1397  
  Keywords  
  Abstract Computer analysis of visual art, especially paintings, is an interesting cross-disciplinary research domain. Most of the research in the analysis of paintings involve medium to small range datasets with own specific settings. Interestingly, significant progress has been made in the field of object and scene recognition lately. A key factor in this success is the introduction and availability of benchmark datasets for evaluation. Surprisingly, such a benchmark setup is still missing in the area of computational painting categorization. In this work, we propose a novel large scale dataset of digital paintings. The dataset consists of paintings from 91 different painters. We further show three applications of our dataset namely: artist categorization, style classification and saliency detection. We investigate how local and global features popular in image classification perform for the tasks of artist and style categorization. For both categorization tasks, our experimental results suggest that combining multiple features significantly improves the final performance. We show that state-of-the-art computer vision methods can correctly classify 50 % of unseen paintings to its painter in a large dataset and correctly attribute its artistic style in over 60 % of the cases. Additionally, we explore the task of saliency detection on paintings and show experimental findings using state-of-the-art saliency estimation algorithms.  
  Address  
  Corporate Author Thesis  
  Publisher Springer Berlin Heidelberg Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 0932-8092 ISBN Medium  
  Area Expedition Conference  
  Notes CIC; LAMP; 600.074; 600.079 Approved no  
  Call Number Admin @ si @ KBW2014 Serial 2510  
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Author Frederic Sampedro; Anna Domenech; Sergio Escalera edit  url
doi  openurl
  Title Static and dynamic computational cancer spread quantification in whole body FDG-PET/CT scans Type Journal Article
  Year 2014 Publication Journal of Medical Imaging and Health Informatics Abbreviated Journal JMIHI  
  Volume 4 Issue (down) 6 Pages 825-831  
  Keywords CANCER SPREAD; COMPUTER AIDED DIAGNOSIS; MEDICAL IMAGING; TUMOR QUANTIFICATION  
  Abstract In this work we address the computational cancer spread quantification scenario in whole body FDG-PET/CT scans. At the static level, this setting can be modeled as a clustering problem on the set of 3D connected components of the whole body PET tumoral segmentation mask carried out by nuclear medicine physicians. At the dynamic level, and ad-hoc algorithm is proposed in order to quantify the cancer spread time evolution which, when combined with other existing indicators, gives rise to the metabolic tumor volume-aggressiveness-spread time evolution chart, a novel tool that we claim that would prove useful in nuclear medicine and oncological clinical or research scenarios. Good performance results of the proposed methodologies both at the clinical and technological level are shown using a dataset of 48 segmented whole body FDG-PET/CT scans.  
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  Notes HuPBA;MILAB Approved no  
  Call Number Admin @ si @ SDE2014b Serial 2548  
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Author Carles Sanchez; Jorge Bernal; F. Javier Sanchez; Antoni Rosell; Marta Diez-Ferrer; Debora Gil edit   pdf
doi  openurl
  Title Towards On-line Quantification of Tracheal Stenosis from Videobronchoscopy Type Journal Article
  Year 2015 Publication International Journal of Computer Assisted Radiology and Surgery Abbreviated Journal IJCAR  
  Volume 10 Issue (down) 6 Pages 935-945  
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  Address  
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  Area Expedition Conference  
  Notes IAM; MV; 600.075 Approved no  
  Call Number Admin @ si @ SBS2015a Serial 2611  
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Author Carolina Malagelada; Michal Drozdzal; Santiago Segui; Sara Mendez; Jordi Vitria; Petia Radeva; Javier Santos; Anna Accarino; Juan R. Malagelada; Fernando Azpiroz edit  doi
openurl 
  Title Classification of functional bowel disorders by objective physiological criteria based on endoluminal image analysis Type Journal Article
  Year 2015 Publication American Journal of Physiology-Gastrointestinal and Liver Physiology Abbreviated Journal AJPGI  
  Volume 309 Issue (down) 6 Pages G413--G419  
  Keywords capsule endoscopy; computer vision analysis; functional bowel disorders; intestinal motility; machine learning  
  Abstract We have previously developed an original method to evaluate small bowel motor function based on computer vision analysis of endoluminal images obtained by capsule endoscopy. Our aim was to demonstrate intestinal motor abnormalities in patients with functional bowel disorders by endoluminal vision analysis. Patients with functional bowel disorders (n = 205) and healthy subjects (n = 136) ingested the endoscopic capsule (Pillcam-SB2, Given-Imaging) after overnight fast and 45 min after gastric exit of the capsule a liquid meal (300 ml, 1 kcal/ml) was administered. Endoluminal image analysis was performed by computer vision and machine learning techniques to define the normal range and to identify clusters of abnormal function. After training the algorithm, we used 196 patients and 48 healthy subjects, completely naive, as test set. In the test set, 51 patients (26%) were detected outside the normal range (P < 0.001 vs. 3 healthy subjects) and clustered into hypo- and hyperdynamic subgroups compared with healthy subjects. Patients with hypodynamic behavior (n = 38) exhibited less luminal closure sequences (41 ± 2% of the recording time vs. 61 ± 2%; P < 0.001) and more static sequences (38 ± 3 vs. 20 ± 2%; P < 0.001); in contrast, patients with hyperdynamic behavior (n = 13) had an increased proportion of luminal closure sequences (73 ± 4 vs. 61 ± 2%; P = 0.029) and more high-motion sequences (3 ± 1 vs. 0.5 ± 0.1%; P < 0.001). Applying an original methodology, we have developed a novel classification of functional gut disorders based on objective, physiological criteria of small bowel function.  
  Address  
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  Publisher American Physiological Society Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
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  ISSN ISBN Medium  
  Area Expedition Conference  
  Notes MILAB; OR;MV Approved no  
  Call Number Admin @ si @ MDS2015 Serial 2666  
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Author Alejandro Gonzalez Alzate; Zhijie Fang; Yainuvis Socarras; Joan Serrat; David Vazquez; Jiaolong Xu; Antonio Lopez edit   pdf
doi  openurl
  Title Pedestrian Detection at Day/Night Time with Visible and FIR Cameras: A Comparison Type Journal Article
  Year 2016 Publication Sensors Abbreviated Journal SENS  
  Volume 16 Issue (down) 6 Pages 820  
  Keywords Pedestrian Detection; FIR  
  Abstract Despite all the significant advances in pedestrian detection brought by computer vision for driving assistance, it is still a challenging problem. One reason is the extremely varying lighting conditions under which such a detector should operate, namely day and night time. Recent research has shown that the combination of visible and non-visible imaging modalities may increase detection accuracy, where the infrared spectrum plays a critical role. The goal of this paper is to assess the accuracy gain of different pedestrian models (holistic, part-based, patch-based) when training with images in the far infrared spectrum. Specifically, we want to compare detection accuracy on test images recorded at day and nighttime if trained (and tested) using (a) plain color images, (b) just infrared images and (c) both of them. In order to obtain results for the last item we propose an early fusion approach to combine features from both modalities. We base the evaluation on a new dataset we have built for this purpose as well as on the publicly available KAIST multispectral dataset.  
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  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 1424-8220 ISBN Medium  
  Area Expedition Conference  
  Notes ADAS; 600.085; 600.076; 600.082; 601.281 Approved no  
  Call Number ADAS @ adas @ GFS2016 Serial 2754  
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Author Angel Sappa; P. Carvajal; Cristhian A. Aguilera-Carrasco; Miguel Oliveira; Dennis Romero; Boris X. Vintimilla edit   pdf
doi  openurl
  Title Wavelet based visible and infrared image fusion: a comparative study Type Journal Article
  Year 2016 Publication Sensors Abbreviated Journal SENS  
  Volume 16 Issue (down) 6 Pages 1-15  
  Keywords Image fusion; fusion evaluation metrics; visible and infrared imaging; discrete wavelet transform  
  Abstract This paper evaluates different wavelet-based cross-spectral image fusion strategies adopted to merge visible and infrared images. The objective is to find the best setup independently of the evaluation metric used to measure the performance. Quantitative performance results are obtained with state of the art approaches together with adaptations proposed in the current work. The options evaluated in the current work result from the combination of different setups in the wavelet image decomposition stage together with different fusion strategies for the final merging stage that generates the resulting representation. Most of the approaches evaluate results according to the application for which they are intended for. Sometimes a human observer is selected to judge the quality of the obtained results. In the current work, quantitative values are considered in order to find correlations between setups and performance of obtained results; these correlations can be used to define a criteria for selecting the best fusion strategy for a given pair of cross-spectral images. The whole procedure is evaluated with a large set of correctly registered visible and infrared image pairs, including both Near InfraRed (NIR) and Long Wave InfraRed (LWIR).  
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  Notes ADAS; 600.086; 600.076 Approved no  
  Call Number Admin @ si @SCA2016 Serial 2807  
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Author Jorge Bernal; Nima Tajkbaksh; F. Javier Sanchez; Bogdan J. Matuszewski; Hao Chen; Lequan Yu; Quentin Angermann; Olivier Romain; Bjorn Rustad; Ilangko Balasingham; Konstantin Pogorelov; Sungbin Choi; Quentin Debard; Lena Maier Hein; Stefanie Speidel; Danail Stoyanov; Patrick Brandao; Henry Cordova; Cristina Sanchez Montes; Suryakanth R. Gurudu; Gloria Fernandez Esparrach; Xavier Dray; Jianming Liang; Aymeric Histace edit   pdf
doi  openurl
  Title Comparative Validation of Polyp Detection Methods in Video Colonoscopy: Results from the MICCAI 2015 Endoscopic Vision Challenge Type Journal Article
  Year 2017 Publication IEEE Transactions on Medical Imaging Abbreviated Journal TMI  
  Volume 36 Issue (down) 6 Pages 1231 - 1249  
  Keywords Endoscopic vision; Polyp Detection; Handcrafted features; Machine Learning; Validation Framework  
  Abstract Colonoscopy is the gold standard for colon cancer screening though still some polyps are missed, thus preventing early disease detection and treatment. Several computational systems have been proposed to assist polyp detection during colonoscopy but so far without consistent evaluation. The lack
of publicly available annotated databases has made it difficult to compare methods and to assess if they achieve performance levels acceptable for clinical use. The Automatic Polyp Detection subchallenge, conducted as part of the Endoscopic Vision Challenge (http://endovis.grand-challenge.org) at the international conference on Medical Image Computing and Computer Assisted
Intervention (MICCAI) in 2015, was an effort to address this need. In this paper, we report the results of this comparative evaluation of polyp detection methods, as well as describe additional experiments to further explore differences between methods. We define performance metrics and provide evaluation databases that allow comparison of multiple methodologies. Results show that convolutional neural networks (CNNs) are the state of the art. Nevertheless it is also demonstrated that combining different methodologies can lead to an improved overall performance.
 
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  Area Expedition Conference  
  Notes MV; 600.096; 600.075 Approved no  
  Call Number Admin @ si @ BTS2017 Serial 2949  
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Author Xinhang Song; Shuqiang Jiang; Luis Herranz edit  doi
openurl 
  Title Multi-Scale Multi-Feature Context Modeling for Scene Recognition in the Semantic Manifold Type Journal Article
  Year 2017 Publication IEEE Transactions on Image Processing Abbreviated Journal TIP  
  Volume 26 Issue (down) 6 Pages 2721-2735  
  Keywords  
  Abstract Before the big data era, scene recognition was often approached with two-step inference using localized intermediate representations (objects, topics, and so on). One of such approaches is the semantic manifold (SM), in which patches and images are modeled as points in a semantic probability simplex. Patch models are learned resorting to weak supervision via image labels, which leads to the problem of scene categories co-occurring in this semantic space. Fortunately, each category has its own co-occurrence patterns that are consistent across the images in that category. Thus, discovering and modeling these patterns are critical to improve the recognition performance in this representation. Since the emergence of large data sets, such as ImageNet and Places, these approaches have been relegated in favor of the much more powerful convolutional neural networks (CNNs), which can automatically learn multi-layered representations from the data. In this paper, we address many limitations of the original SM approach and related works. We propose discriminative patch representations using neural networks and further propose a hybrid architecture in which the semantic manifold is built on top of multiscale CNNs. Both representations can be computed significantly faster than the Gaussian mixture models of the original SM. To combine multiple scales, spatial relations, and multiple features, we formulate rich context models using Markov random fields. To solve the optimization problem, we analyze global and local approaches, where a top-down hierarchical algorithm has the best performance. Experimental results show that exploiting different types of contextual relations jointly consistently improves the recognition accuracy.  
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  Area Expedition Conference  
  Notes LAMP; 600.120 Approved no  
  Call Number Admin @ si @ SJH2017a Serial 2963  
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Author Marta Diez-Ferrer; Debora Gil; Cristian Tebe; Carles Sanchez edit   pdf
doi  openurl
  Title Positive Airway Pressure to Enhance Computed Tomography Imaging for Airway Segmentation for Virtual Bronchoscopic Navigation Type Journal Article
  Year 2018 Publication Respiration Abbreviated Journal RES  
  Volume 96 Issue (down) 6 Pages 525-534  
  Keywords Multidetector computed tomography; Bronchoscopy; Continuous positive airway pressure; Image enhancement; Virtual bronchoscopic navigation  
  Abstract Abstract
RATIONALE:
Virtual bronchoscopic navigation (VBN) guidance to peripheral pulmonary lesions is often limited by insufficient segmentation of the peripheral airways.

OBJECTIVES:
To test the effect of applying positive airway pressure (PAP) during CT acquisition to improve segmentation, particularly at end-expiration.

METHODS:
CT acquisitions in inspiration and expiration with 4 PAP protocols were recorded prospectively and compared to baseline inspiratory acquisitions in 20 patients. The 4 protocols explored differences between devices (flow vs. turbine), exposures (within seconds vs. 15-min) and pressure levels (10 vs. 14 cmH2O). Segmentation quality was evaluated with the number of airways and number of endpoints reached. A generalized mixed-effects model explored the estimated effect of each protocol.

MEASUREMENTS AND MAIN RESULTS:
Patient characteristics and lung function did not significantly differ between protocols. Compared to baseline inspiratory acquisitions, expiratory acquisitions after 15 min of 14 cmH2O PAP segmented 1.63-fold more airways (95% CI 1.07-2.48; p = 0.018) and reached 1.34-fold more endpoints (95% CI 1.08-1.66; p = 0.004). Inspiratory acquisitions performed immediately under 10 cmH2O PAP reached 1.20-fold (95% CI 1.09-1.33; p < 0.001) more endpoints; after 15 min the increase was 1.14-fold (95% CI 1.05-1.24; p < 0.001).

CONCLUSIONS:
CT acquisitions with PAP segment more airways and reach more endpoints than baseline inspiratory acquisitions. The improvement is particularly evident at end-expiration after 15 min of 14 cmH2O PAP. Further studies must confirm that the improvement increases diagnostic yield when using VBN to evaluate peripheral pulmonary lesions.
 
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  Notes IAM; 600.145 Approved no  
  Call Number Admin @ si @ DGT2018 Serial 3135  
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Author Reza Azad; Maryam Asadi-Aghbolaghi; Shohreh Kasaei; Sergio Escalera edit  doi
openurl 
  Title Dynamic 3D Hand Gesture Recognition by Learning Weighted Depth Motion Maps Type Journal Article
  Year 2019 Publication IEEE Transactions on Circuits and Systems for Video Technology Abbreviated Journal TCSVT  
  Volume 29 Issue (down) 6 Pages 1729-1740  
  Keywords Hand gesture recognition; Multilevel temporal sampling; Weighted depth motion map; Spatio-temporal description; VLAD encoding  
  Abstract Hand gesture recognition from sequences of depth maps is a challenging computer vision task because of the low inter-class and high intra-class variability, different execution rates of each gesture, and the high articulated nature of human hand. In this paper, a multilevel temporal sampling (MTS) method is first proposed that is based on the motion energy of key-frames of depth sequences. As a result, long, middle, and short sequences are generated that contain the relevant gesture information. The MTS results in increasing the intra-class similarity while raising the inter-class dissimilarities. The weighted depth motion map (WDMM) is then proposed to extract the spatio-temporal information from generated summarized sequences by an accumulated weighted absolute difference of consecutive frames. The histogram of gradient (HOG) and local binary pattern (LBP) are exploited to extract features from WDMM. The obtained results define the current state-of-the-art on three public benchmark datasets of: MSR Gesture 3D, SKIG, and MSR Action 3D, for 3D hand gesture recognition. We also achieve competitive results on NTU action dataset.  
  Address June 2019,  
  Corporate Author Thesis  
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  Series Editor Series Title Abbreviated Series Title  
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  Notes HUPBA; no proj Approved no  
  Call Number Admin @ si @ AAK2018 Serial 3213  
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Author Mikhail Mozerov; Joost Van de Weijer edit   pdf
doi  openurl
  Title One-view occlusion detection for stereo matching with a fully connected CRF model Type Journal Article
  Year 2019 Publication IEEE Transactions on Image Processing Abbreviated Journal TIP  
  Volume 28 Issue (down) 6 Pages 2936-2947  
  Keywords Stereo matching; energy minimization; fully connected MRF model; geodesic distance filter  
  Abstract In this paper, we extend the standard belief propagation (BP) sequential technique proposed in the tree-reweighted sequential method [15] to the fully connected CRF models with the geodesic distance affinity. The proposed method has been applied to the stereo matching problem. Also a new approach to the BP marginal solution is proposed that we call one-view occlusion detection (OVOD). In contrast to the standard winner takes all (WTA) estimation, the proposed OVOD solution allows to find occluded regions in the disparity map and simultaneously improve the matching result. As a result we can perform only
one energy minimization process and avoid the cost calculation for the second view and the left-right check procedure. We show that the OVOD approach considerably improves results for cost augmentation and energy minimization techniques in comparison with the standard one-view affinity space implementation. We apply our method to the Middlebury data set and reach state-ofthe-art especially for median, average and mean squared error metrics.
 
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  Notes LAMP; 600.098; 600.109; 602.133; 600.120 Approved no  
  Call Number Admin @ si @ MoW2019 Serial 3221  
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Author Mikhail Mozerov; Fei Yang; Joost Van de Weijer edit   pdf
doi  openurl
  Title Sparse Data Interpolation Using the Geodesic Distance Affinity Space Type Journal Article
  Year 2019 Publication IEEE Signal Processing Letters Abbreviated Journal SPL  
  Volume 26 Issue (down) 6 Pages 943 - 947  
  Keywords  
  Abstract In this letter, we adapt the geodesic distance-based recursive filter to the sparse data interpolation problem. The proposed technique is general and can be easily applied to any kind of sparse data. We demonstrate its superiority over other interpolation techniques in three experiments for qualitative and quantitative evaluation. In addition, we compare our method with the popular interpolation algorithm presented in the paper on EpicFlow optical flow, which is intuitively motivated by a similar geodesic distance principle. The comparison shows that our algorithm is more accurate and considerably faster than the EpicFlow interpolation technique.  
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  Notes LAMP; 600.120 Approved no  
  Call Number Admin @ si @ MYW2019 Serial 3261  
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Author Beata Megyesi; Bernhard Esslinger; Alicia Fornes; Nils Kopal; Benedek Lang; George Lasry; Karl de Leeuw; Eva Pettersson; Arno Wacker; Michelle Waldispuhl edit  url
openurl 
  Title Decryption of historical manuscripts: the DECRYPT project Type Journal Article
  Year 2020 Publication Cryptologia Abbreviated Journal CRYPT  
  Volume 44 Issue (down) 6 Pages 545-559  
  Keywords automatic decryption; cipher collection; historical cryptology; image transcription  
  Abstract Many historians and linguists are working individually and in an uncoordinated fashion on the identification and decryption of historical ciphers. This is a time-consuming process as they often work without access to automatic methods and processes that can accelerate the decipherment. At the same time, computer scientists and cryptologists are developing algorithms to decrypt various cipher types without having access to a large number of original ciphertexts. In this paper, we describe the DECRYPT project aiming at the creation of resources and tools for historical cryptology by bringing the expertise of various disciplines together for collecting data, exchanging methods for faster progress to transcribe, decrypt and contextualize historical encrypted manuscripts. We present our goals and work-in progress of a general approach for analyzing historical encrypted manuscripts using standardized methods and a new set of state-of-the-art tools. We release the data and tools as open-source hoping that all mentioned disciplines would benefit and contribute to the research infrastructure of historical cryptology.  
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  Area Expedition Conference  
  Notes DAG; 600.140; 600.121 Approved no  
  Call Number Admin @ si @ MEF2020 Serial 3347  
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