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	Author	Penny Tarling; Mauricio Cantor; Albert Clapes; Sergio Escalera
	Title	Deep learning with self-supervision and uncertainty regularization to count fish in underwater images			Type	Journal Article
	Year	2022	Publication	PloS One	Abbreviated Journal	Plos
	Volume	17	Issue	5	Pages	e0267759
	Keywords
	Abstract	Effective conservation actions require effective population monitoring. However, accurately counting animals in the wild to inform conservation decision-making is difficult. Monitoring populations through image sampling has made data collection cheaper, wide-reaching and less intrusive but created a need to process and analyse this data efficiently. Counting animals from such data is challenging, particularly when densely packed in noisy images. Attempting this manually is slow and expensive, while traditional computer vision methods are limited in their generalisability. Deep learning is the state-of-the-art method for many computer vision tasks, but it has yet to be properly explored to count animals. To this end, we employ deep learning, with a density-based regression approach, to count fish in low-resolution sonar images. We introduce a large dataset of sonar videos, deployed to record wild Lebranche mullet schools (Mugil liza), with a subset of 500 labelled images. We utilise abundant unlabelled data in a self-supervised task to improve the supervised counting task. For the first time in this context, by introducing uncertainty quantification, we improve model training and provide an accompanying measure of prediction uncertainty for more informed biological decision-making. Finally, we demonstrate the generalisability of our proposed counting framework through testing it on a recent benchmark dataset of high-resolution annotated underwater images from varying habitats (DeepFish). From experiments on both contrasting datasets, we demonstrate our network outperforms the few other deep learning models implemented for solving this task. By providing an open-source framework along with training data, our study puts forth an efficient deep learning template for crowd counting aquatic animals thereby contributing effective methods to assess natural populations from the ever-increasing visual data.
	Address
	Corporate Author				Thesis
	Publisher	Public Library of Science	Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	HuPBA			Approved	no
	Call Number	Admin @ si @ TCC2022			Serial	3743
Permanent link to this record



	Author	David Castells; Vinh Ngo; Juan Borrego-Carazo; Marc Codina; Carles Sanchez; Debora Gil; Jordi Carrabina
	Title	A Survey of FPGA-Based Vision Systems for Autonomous Cars			Type	Journal Article
	Year	2022	Publication	IEEE Access	Abbreviated Journal	ACESS
	Volume	10	Issue		Pages	132525-132563
	Keywords	Autonomous automobile; Computer vision; field programmable gate arrays; reconfigurable architectures
	Abstract	On the road to making self-driving cars a reality, academic and industrial researchers are working hard to continue to increase safety while meeting technical and regulatory constraints Understanding the surrounding environment is a fundamental task in self-driving cars. It requires combining complex computer vision algorithms. Although state-of-the-art algorithms achieve good accuracy, their implementations often require powerful computing platforms with high power consumption. In some cases, the processing speed does not meet real-time constraints. FPGA platforms are often used to implement a category of latency-critical algorithms that demand maximum performance and energy efficiency. Since self-driving car computer vision functions fall into this category, one could expect to see a wide adoption of FPGAs in autonomous cars. In this paper, we survey the computer vision FPGA-based works from the literature targeting automotive applications over the last decade. Based on the survey, we identify the strengths and weaknesses of FPGAs in this domain and future research opportunities and challenges.
	Address	16 December 2022
	Corporate Author				Thesis
	Publisher	IEEE	Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	IAM; 600.166			Approved	no
	Call Number	Admin @ si @ CNB2022			Serial	3760
Permanent link to this record



	Author	Yecong Wan; Yuanshuo Cheng; Miingwen Shao; Jordi Gonzalez
	Title	Image rain removal and illumination enhancement done in one go			Type	Journal Article
	Year	2022	Publication	Knowledge-Based Systems	Abbreviated Journal	KBS
	Volume	252	Issue		Pages	109244
	Keywords
	Abstract	Rain removal plays an important role in the restoration of degraded images. Recently, CNN-based methods have achieved remarkable success. However, these approaches neglect that the appearance of real-world rain is often accompanied by low light conditions, which will further degrade the image quality, thereby hindering the restoration mission. Therefore, it is very indispensable to jointly remove the rain and enhance illumination for real-world rain image restoration. To this end, we proposed a novel spatially-adaptive network, dubbed SANet, which can remove the rain and enhance illumination in one go with the guidance of degradation mask. Meanwhile, to fully utilize negative samples, a contrastive loss is proposed to preserve more natural textures and consistent illumination. In addition, we present a new synthetic dataset, named DarkRain, to boost the development of rain image restoration algorithms in practical scenarios. DarkRain not only contains different degrees of rain, but also considers different lighting conditions, and more realistically simulates real-world rainfall scenarios. SANet is extensively evaluated on the proposed dataset and attains new state-of-the-art performance against other combining methods. Moreover, after a simple transformation, our SANet surpasses existing the state-of-the-art algorithms in both rain removal and low-light image enhancement.
	Address	Sept 2022
	Corporate Author				Thesis
	Publisher	Elsevier	Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	ISE; 600.157; 600.168			Approved	no
	Call Number	Admin @ si @ WCS2022			Serial	3744
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	Author	Lei Kang; Pau Riba; Marçal Rusiñol; Alicia Fornes; Mauricio Villegas
	Title	Pay Attention to What You Read: Non-recurrent Handwritten Text-Line Recognition			Type	Journal Article
	Year	2022	Publication	Pattern Recognition	Abbreviated Journal	PR
	Volume	129	Issue		Pages	108766
	Keywords
	Abstract	The advent of recurrent neural networks for handwriting recognition marked an important milestone reaching impressive recognition accuracies despite the great variability that we observe across different writing styles. Sequential architectures are a perfect fit to model text lines, not only because of the inherent temporal aspect of text, but also to learn probability distributions over sequences of characters and words. However, using such recurrent paradigms comes at a cost at training stage, since their sequential pipelines prevent parallelization. In this work, we introduce a non-recurrent approach to recognize handwritten text by the use of transformer models. We propose a novel method that bypasses any recurrence. By using multi-head self-attention layers both at the visual and textual stages, we are able to tackle character recognition as well as to learn language-related dependencies of the character sequences to be decoded. Our model is unconstrained to any predefined vocabulary, being able to recognize out-of-vocabulary words, i.e. words that do not appear in the training vocabulary. We significantly advance over prior art and demonstrate that satisfactory recognition accuracies are yielded even in few-shot learning scenarios.
	Address	Sept. 2022
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	DAG; 600.121; 600.162			Approved	no
	Call Number	Admin @ si @ KRR2022			Serial	3556
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	Author	Pau Riba; Lutz Goldmann; Oriol Ramos Terrades; Diede Rusticus; Alicia Fornes; Josep Llados
	Title	Table detection in business document images by message passing networks			Type	Journal Article
	Year	2022	Publication	Pattern Recognition	Abbreviated Journal	PR
	Volume	127	Issue		Pages	108641
	Keywords
	Abstract	Tabular structures in business documents offer a complementary dimension to the raw textual data. For instance, there is information about the relationships among pieces of information. Nowadays, digital mailroom applications have become a key service for workflow automation. Therefore, the detection and interpretation of tables is crucial. With the recent advances in information extraction, table detection and recognition has gained interest in document image analysis, in particular, with the absence of rule lines and unknown information about rows and columns. However, business documents usually contain sensitive contents limiting the amount of public benchmarking datasets. In this paper, we propose a graph-based approach for detecting tables in document images which do not require the raw content of the document. Hence, the sensitive content can be previously removed and, instead of using the raw image or textual content, we propose a purely structural approach to keep sensitive data anonymous. Our framework uses graph neural networks (GNNs) to describe the local repetitive structures that constitute a table. In particular, our main application domain are business documents. We have carefully validated our approach in two invoice datasets and a modern document benchmark. Our experiments demonstrate that tables can be detected by purely structural approaches.
	Address	July 2022
	Corporate Author				Thesis
	Publisher	Elsevier	Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	DAG; 600.162; 600.121			Approved	no
	Call Number	Admin @ si @ RGR2022			Serial	3729
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	Author	Eduardo Aguilar; Bhalaji Nagarajan; Beatriz Remeseiro; Petia Radeva
	Title	Bayesian deep learning for semantic segmentation of food images			Type	Journal Article
	Year	2022	Publication	Computers and Electrical Engineering	Abbreviated Journal	CEE
	Volume	103	Issue		Pages	108380
	Keywords	Deep learning; Uncertainty quantification; Bayesian inference; Image segmentation; Food analysis
	Abstract	Deep learning has provided promising results in various applications; however, algorithms tend to be overconfident in their predictions, even though they may be entirely wrong. Particularly for critical applications, the model should provide answers only when it is very sure of them. This article presents a Bayesian version of two different state-of-the-art semantic segmentation methods to perform multi-class segmentation of foods and estimate the uncertainty about the given predictions. The proposed methods were evaluated on three public pixel-annotated food datasets. As a result, we can conclude that Bayesian methods improve the performance achieved by the baseline architectures and, in addition, provide information to improve decision-making. Furthermore, based on the extracted uncertainty map, we proposed three measures to rank the images according to the degree of noisy annotations they contained. Note that the top 135 images ranked by one of these measures include more than half of the worst-labeled food images.
	Address	October 2022
	Corporate Author				Thesis
	Publisher	Science Direct	Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	MILAB			Approved	no
	Call Number	Admin @ si @ ANR2022			Serial	3763
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	Author	S.K. Jemni; Mohamed Ali Souibgui; Yousri Kessentini; Alicia Fornes
	Title	Enhance to Read Better: A Multi-Task Adversarial Network for Handwritten Document Image Enhancement			Type	Journal Article
	Year	2022	Publication	Pattern Recognition	Abbreviated Journal	PR
	Volume	123	Issue		Pages	108370
	Keywords
	Abstract	Handwritten document images can be highly affected by degradation for different reasons: Paper ageing, daily-life scenarios (wrinkles, dust, etc.), bad scanning process and so on. These artifacts raise many readability issues for current Handwritten Text Recognition (HTR) algorithms and severely devalue their efficiency. In this paper, we propose an end to end architecture based on Generative Adversarial Networks (GANs) to recover the degraded documents into a and form. Unlike the most well-known document binarization methods, which try to improve the visual quality of the degraded document, the proposed architecture integrates a handwritten text recognizer that promotes the generated document image to be more readable. To the best of our knowledge, this is the first work to use the text information while binarizing handwritten documents. Extensive experiments conducted on degraded Arabic and Latin handwritten documents demonstrate the usefulness of integrating the recognizer within the GAN architecture, which improves both the visual quality and the readability of the degraded document images. Moreover, we outperform the state of the art in H-DIBCO challenges, after fine tuning our pre-trained model with synthetically degraded Latin handwritten images, on this task.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	DAG; 600.124; 600.121; 602.230			Approved	no
	Call Number	Admin @ si @ JSK2022			Serial	3613
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	Author	Iban Berganzo-Besga; Hector A. Orengo; Felipe Lumbreras; Paloma Aliende; Monica N. Ramsey
	Title	Automated detection and classification of multi-cell Phytoliths using Deep Learning-Based Algorithms			Type	Journal Article
	Year	2022	Publication	Journal of Archaeological Science	Abbreviated Journal	JArchSci
	Volume	148	Issue		Pages	105654
	Keywords
	Abstract	This paper presents an algorithm for automated detection and classification of multi-cell phytoliths, one of the major components of many archaeological and paleoenvironmental deposits. This identification, based on phytolith wave pattern, is made using a pretrained VGG19 deep learning model. This approach has been tested in three key phytolith genera for the study of agricultural origins in Near East archaeology: Avena, Hordeum and Triticum. Also, this classification has been validated at species-level using Triticum boeoticum and dicoccoides images. Due to the diversity of microscopes, cameras and chemical treatments that can influence images of phytolith slides, three types of data augmentation techniques have been implemented: rotation of the images at 45-degree angles, random colour and brightness jittering, and random blur/sharpen. The implemented workflow has resulted in an overall accuracy of 93.68% for phytolith genera, improving previous attempts. The algorithm has also demonstrated its potential to automatize the classification of phytoliths species with an overall accuracy of 100%. The open code and platforms employed to develop the algorithm assure the method's accessibility, reproducibility and reusability.
	Address	December 2022
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	MSIAU; MACO; 600.167			Approved	no
	Call Number	Admin @ si @ BOL2022			Serial	3753
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	Author	Joakim Bruslund Haurum; Meysam Madadi; Sergio Escalera; Thomas B. Moeslund
	Title	Multi-scale hybrid vision transformer and Sinkhorn tokenizer for sewer defect classification			Type	Journal Article
	Year	2022	Publication	Automation in Construction	Abbreviated Journal	AC
	Volume	144	Issue		Pages	104614
	Keywords	Sewer Defect Classification; Vision Transformers; Sinkhorn-Knopp; Convolutional Neural Networks; Closed-Circuit Television; Sewer Inspection
	Abstract	A crucial part of image classification consists of capturing non-local spatial semantics of image content. This paper describes the multi-scale hybrid vision transformer (MSHViT), an extension of the classical convolutional neural network (CNN) backbone, for multi-label sewer defect classification. To better model spatial semantics in the images, features are aggregated at different scales non-locally through the use of a lightweight vision transformer, and a smaller set of tokens was produced through a novel Sinkhorn clustering-based tokenizer using distinct cluster centers. The proposed MSHViT and Sinkhorn tokenizer were evaluated on the Sewer-ML multi-label sewer defect classification dataset, showing consistent performance improvements of up to 2.53 percentage points.
	Address	Dec 2022
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	HuPBA			Approved	no
	Call Number	Admin @ si @ BME2022c			Serial	3780
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	Author	Zhen Xu; Sergio Escalera; Adrien Pavao; Magali Richard; Wei-Wei Tu; Quanming Yao; Huan Zhao; Isabelle Guyon
	Title	Codabench: Flexible, easy-to-use, and reproducible meta-benchmark platform			Type	Journal Article
	Year	2022	Publication	Patterns	Abbreviated Journal	PATTERNS
	Volume	3	Issue	7	Pages	100543
	Keywords	Machine learning; data science; benchmark platform; reproducibility; competitions
	Abstract	Obtaining a standardized benchmark of computational methods is a major issue in data-science communities. Dedicated frameworks enabling fair benchmarking in a unified environment are yet to be developed. Here, we introduce Codabench, a meta-benchmark platform that is open sourced and community driven for benchmarking algorithms or software agents versus datasets or tasks. A public instance of Codabench is open to everyone free of charge and allows benchmark organizers to fairly compare submissions under the same setting (software, hardware, data, algorithms), with custom protocols and data formats. Codabench has unique features facilitating easy organization of flexible and reproducible benchmarks, such as the possibility of reusing templates of benchmarks and supplying compute resources on demand. Codabench has been used internally and externally on various applications, receiving more than 130 users and 2,500 submissions. As illustrative use cases, we introduce four diverse benchmarks covering graph machine learning, cancer heterogeneity, clinical diagnosis, and reinforcement learning.
	Address	June 24, 2022
	Corporate Author				Thesis
	Publisher	Science Direct	Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	HuPBA			Approved	no
	Call Number	Admin @ si @ XEP2022			Serial	3764
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	Author	Oriol Ramos Terrades; Albert Berenguel; Debora Gil
	Title	A Flexible Outlier Detector Based on a Topology Given by Graph Communities			Type	Journal Article
	Year	2022	Publication	Big Data Research	Abbreviated Journal	BDR
	Volume	29	Issue		Pages	100332
	Keywords	Classification algorithms; Detection algorithms; Description of feature space local structure; Graph communities; Machine learning algorithms; Outlier detectors
	Abstract	Outlier detection is essential for optimal performance of machine learning methods and statistical predictive models. Their detection is especially determinant in small sample size unbalanced problems, since in such settings outliers become highly influential and significantly bias models. This particular experimental settings are usual in medical applications, like diagnosis of rare pathologies, outcome of experimental personalized treatments or pandemic emergencies. In contrast to population-based methods, neighborhood based local approaches compute an outlier score from the neighbors of each sample, are simple flexible methods that have the potential to perform well in small sample size unbalanced problems. A main concern of local approaches is the impact that the computation of each sample neighborhood has on the method performance. Most approaches use a distance in the feature space to define a single neighborhood that requires careful selection of several parameters, like the number of neighbors. This work presents a local approach based on a local measure of the heterogeneity of sample labels in the feature space considered as a topological manifold. Topology is computed using the communities of a weighted graph codifying mutual nearest neighbors in the feature space. This way, we provide with a set of multiple neighborhoods able to describe the structure of complex spaces without parameter fine tuning. The extensive experiments on real-world and synthetic data sets show that our approach outperforms, both, local and global strategies in multi and single view settings.
	Address	August 28, 2022
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	DAG; IAM; 600.140; 600.121; 600.139; 600.145; 600.159			Approved	no
	Call Number	Admin @ si @ RBG2022a			Serial	3718
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	Author	Xavier Soria; Gonzalo Pomboza-Junez; Angel Sappa
	Title	LDC: Lightweight Dense CNN for Edge Detection			Type	Journal Article
	Year	2022	Publication	IEEE Access	Abbreviated Journal	ACCESS
	Volume	10	Issue		Pages	68281-68290
	Keywords
	Abstract	This paper presents a Lightweight Dense Convolutional (LDC) neural network for edge detection. The proposed model is an adaptation of two state-of-the-art approaches, but it requires less than 4% of parameters in comparison with these approaches. The proposed architecture generates thin edge maps and reaches the highest score (i.e., ODS) when compared with lightweight models (models with less than 1 million parameters), and reaches a similar performance when compare with heavy architectures (models with about 35 million parameters). Both quantitative and qualitative results and comparisons with state-of-the-art models, using different edge detection datasets, are provided. The proposed LDC does not use pre-trained weights and requires straightforward hyper-parameter settings. The source code is released at https://github.com/xavysp/LDC
	Address	27 June 2022
	Corporate Author				Thesis
	Publisher	IEEE	Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	MSIAU; MACO; 600.160; 600.167			Approved	no
	Call Number	Admin @ si @ SPS2022			Serial	3751
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	Author	Parichehr Behjati Ardakani; Pau Rodriguez; Carles Fernandez; Armin Mehri; Xavier Roca; Seiichi Ozawa; Jordi Gonzalez
	Title	Frequency-based Enhancement Network for Efficient Super-Resolution			Type	Journal Article
	Year	2022	Publication	IEEE Access	Abbreviated Journal	ACCESS
	Volume	10	Issue		Pages	57383-57397
	Keywords	Deep learning; Frequency-based methods; Lightweight architectures; Single image super-resolution
	Abstract	Recently, deep convolutional neural networks (CNNs) have provided outstanding performance in single image super-resolution (SISR). Despite their remarkable performance, the lack of high-frequency information in the recovered images remains a core problem. Moreover, as the networks increase in depth and width, deep CNN-based SR methods are faced with the challenge of computational complexity in practice. A promising and under-explored solution is to adapt the amount of compute based on the different frequency bands of the input. To this end, we present a novel Frequency-based Enhancement Block (FEB) which explicitly enhances the information of high frequencies while forwarding low-frequencies to the output. In particular, this block efficiently decomposes features into low- and high-frequency and assigns more computation to high-frequency ones. Thus, it can help the network generate more discriminative representations by explicitly recovering finer details. Our FEB design is simple and generic and can be used as a direct replacement of commonly used SR blocks with no need to change network architectures. We experimentally show that when replacing SR blocks with FEB we consistently improve the reconstruction error, while reducing the number of parameters in the model. Moreover, we propose a lightweight SR model — Frequency-based Enhancement Network (FENet) — based on FEB that matches the performance of larger models. Extensive experiments demonstrate that our proposal performs favorably against the state-of-the-art SR algorithms in terms of visual quality, memory footprint, and inference time. The code is available at https://github.com/pbehjatii/FENet
	Address	18 May 2022
	Corporate Author				Thesis
	Publisher	IEEE	Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	ISE			Approved	no
	Call Number	Admin @ si @ BRF2022a			Serial	3747
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	Author	Miquel Angel Piera; Jose Luis Muñoz; Debora Gil; Gonzalo Martin; Jordi Manzano
	Title	A Socio-Technical Simulation Model for the Design of the Future Single Pilot Cockpit: An Opportunity to Improve Pilot Performance			Type	Journal Article
	Year	2022	Publication	IEEE Access	Abbreviated Journal	ACCESS
	Volume	10	Issue		Pages	22330-22343
	Keywords	Human factors ; Performance evaluation ; Simulation; Sociotechnical systems ; System performance
	Abstract	The future deployment of single pilot operations must be supported by new cockpit computer services. Such services require an adaptive context-aware integration of technical functionalities with the concurrent tasks that a pilot must deal with. Advanced artificial intelligence supporting services and improved communication capabilities are the key enabling technologies that will render future cockpits more integrated with the present digitalized air traffic management system. However, an issue in the integration of such technologies is the lack of socio-technical analysis in the design of these teaming mechanisms. A key factor in determining how and when a service support should be provided is the dynamic evolution of pilot workload. This paper investigates how the socio-technical model-based systems engineering approach paves the way for the design of a digital assistant framework by formalizing this workload. The model was validated in an Airbus A-320 cockpit simulator, and the results confirmed the degraded pilot behavioral model and the performance impact according to different contextual flight deck information. This study contributes to practical knowledge for designing human-machine task-sharing systems.
	Address	Feb 2022
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	IAM;			Approved	no
	Call Number	Admin @ si @ PMG2022			Serial	3697
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	Author	Victor M. Campello; Carlos Martin-Isla; Cristian Izquierdo; Andrea Guala; Jose F. Rodriguez Palomares; David Vilades; Martin L. Descalzo; Mahir Karakas; Ersin Cavus; Zahra Zahra Raisi-Estabragh; Steffen E. Petersen; Sergio Escalera; Santiago Segui; Karim Lekadir
	Title	Minimising multi-centre radiomics variability through image normalisation: a pilot study			Type	Journal Article
	Year	2022	Publication	Scientific Reports	Abbreviated Journal	ScR
	Volume	12	Issue	1	Pages	12532
	Keywords
	Abstract	Radiomics is an emerging technique for the quantification of imaging data that has recently shown great promise for deeper phenotyping of cardiovascular disease. Thus far, the technique has been mostly applied in single-centre studies. However, one of the main difficulties in multi-centre imaging studies is the inherent variability of image characteristics due to centre differences. In this paper, a comprehensive analysis of radiomics variability under several image- and feature-based normalisation techniques was conducted using a multi-centre cardiovascular magnetic resonance dataset. 218 subjects divided into healthy (n = 112) and hypertrophic cardiomyopathy (n = 106, HCM) groups from five different centres were considered. First and second order texture radiomic features were extracted from three regions of interest, namely the left and right ventricular cavities and the left ventricular myocardium. Two methods were used to assess features’ variability. First, feature distributions were compared across centres to obtain a distribution similarity index. Second, two classification tasks were proposed to assess: (1) the amount of centre-related information encoded in normalised features (centre identification) and (2) the generalisation ability for a classification model when trained on these features (healthy versus HCM classification). The results showed that the feature-based harmonisation technique ComBat is able to remove the variability introduced by centre information from radiomic features, at the expense of slightly degrading classification performance. Piecewise linear histogram matching normalisation gave features with greater generalisation ability for classification ( balanced accuracy in between 0.78 ± 0.08 and 0.79 ± 0.09). Models trained with features from images without normalisation showed the worst performance overall ( balanced accuracy in between 0.45 ± 0.28 and 0.60 ± 0.22). In conclusion, centre-related information removal did not imply good generalisation ability for classification.
	Address	2022/07/22
	Corporate Author				Thesis
	Publisher	Springer Nature	Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	HuPBA			Approved	no
	Call Number	Admin @ si @ CMI2022			Serial	3749
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