Abstract: Domain Adaptation (DA) has recently raised strong interests in the medical imaging community. While a large variety of DA techniques has been proposed for image segmentation, most of these techniques have been validated either on private datasets or on small publicly available datasets. Moreover, these datasets mostly addressed single-class problems. To tackle these limitations, the Cross-Modality Domain Adaptation (crossMoDA) challenge was organised in conjunction with the 24th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2021). CrossMoDA is the first large and multi-class benchmark for unsupervised cross-modality DA. The challenge's goal is to segment two key brain structures involved in the follow-up and treatment planning of vestibular schwannoma (VS): the VS and the cochleas. Currently, the diagnosis and surveillance in patients with VS are performed using contrast-enhanced T1 (ceT1) MRI. However, there is growing interest in using non-contrast sequences such as high-resolution T2 (hrT2) MRI. Therefore, we created an unsupervised cross-modality segmentation benchmark. The training set provides annotated ceT1 (N=105) and unpaired non-annotated hrT2 (N=105). The aim was to automatically perform unilateral VS and bilateral cochlea segmentation on hrT2 as provided in the testing set (N=137). A total of 16 teams submitted their algorithm for the evaluation phase. The level of performance reached by the top-performing teams is strikingly high (best median Dice – VS:88.4%; Cochleas:85.7%) and close to full supervision (median Dice – VS:92.5%; Cochleas:87.7%). All top-performing methods made use of an image-to-image translation approach to transform the source-domain images into pseudo-target-domain images. A segmentation network was then trained using these generated images and the manual annotations provided for the source image.

Abstract: Assessment of myocardial viability is essential in diagnosis and treatment management of patients suffering from myocardial infarction, and classification of pathology on the myocardium is the key to this assessment. This work defines a new task of medical image analysis, i.e., to perform myocardial pathology segmentation (MyoPS) combining three-sequence cardiac magnetic resonance (CMR) images, which was first proposed in the MyoPS challenge, in conjunction with MICCAI 2020. Note that MyoPS refers to both myocardial pathology segmentation and the challenge in this paper. The challenge provided 45 paired and pre-aligned CMR images, allowing algorithms to combine the complementary information from the three CMR sequences for pathology segmentation. In this article, we provide details of the challenge, survey the works from fifteen participants and interpret their methods according to five aspects, i.e., preprocessing, data augmentation, learning strategy, model architecture and post-processing. In addition, we analyze the results with respect to different factors, in order to examine the key obstacles and explore the potential of solutions, as well as to provide a benchmark for future research. The average Dice scores of submitted algorithms were and for myocardial scars and edema, respectively. We conclude that while promising results have been reported, the research is still in the early stage, and more in-depth exploration is needed before a successful application to the clinics. MyoPS data and evaluation tool continue to be publicly available upon registration via its homepage (www.sdspeople.fudan.edu.cn/zhuangxiahai/0/myops20/).

Abstract: JCR 2019 Q2, IF=3.121
The task of unpaired image-to-image translation is highly challenging due to the lack of explicit cross-domain pairs of instances. We consider here diverse image translation (DIT), an even more challenging setting in which an image can have multiple plausible translations. This is normally achieved by explicitly disentangling content and style in the latent representation and sampling different styles codes while maintaining the image content. Despite the success of current DIT models, they are prone to suffer from bias. In this paper, we study the problem of bias in image-to-image translation. Biased datasets may add undesired changes (e.g. change gender or race in face images) to the output translations as a consequence of the particular underlying visual distribution in the target domain. In order to alleviate the effects of this problem we propose the use of semantic constraints that enforce the preservation of desired image properties. Our proposed model is a step towards unbiased diverse image-to-image translation (UDIT), and results in less unwanted changes in the translated images while still performing the wanted transformation. Experiments on several heavily biased datasets show the effectiveness of the proposed techniques in different domains such as faces, objects, and scenes.

Abstract: Finding a person across a camera network plays an important role in video surveillance. For a real-world person re-identification application, in order to guarantee an optimal time response, it is crucial to find the balance between accuracy and speed. We analyse this trade-off, comparing a classical method, that comprises hand-crafted feature description and metric learning, in particular, LOMO and XQDA, to deep learning based techniques, using image classification networks, ResNet and MobileNets. Additionally, we propose and analyse network distillation as a learning strategy to reduce the computational cost of the deep learning approach at test time. We evaluate both methods on the Market-1501 and DukeMTMC-reID large-scale datasets, showing that distillation helps reducing the computational cost at inference time while even increasing the accuracy performance.

Abstract: Blur detection aims at segmenting the blurred areas of a given image. Recent deep learning-based methods approach this problem by learning an end-to-end mapping between the blurred input and a binary mask representing the localization of its blurred areas. Nevertheless, the effectiveness of such deep models is limited due to the scarcity of datasets annotated in terms of blur segmentation, as blur annotation is labor intensive. In this work, we bypass the need for such annotated datasets for end-to-end learning, and instead rely on object proposals and a model for blur generation in order to produce a dataset of synthetically blurred images. This allows us to perform self-supervised learning over the generated image and ground truth blur mask pairs using CNNs, defining a framework that can be employed in purely self-supervised, weakly supervised or semi-supervised configurations. Interestingly, experimental results of such setups over the largest blur segmentation datasets available show that this approach achieves state of the art results in blur segmentation, even without ever observing any real blurred image.

Abstract: This paper presents a domain adaptation strategy to efficiently train network architectures for estimating the relative camera pose in multi-view scenarios. The network architectures are fed by a pair of simultaneously acquired images, hence in order to improve the accuracy of the solutions, and due to the lack of large datasets with pairs of overlapped images, a domain adaptation strategy is proposed. The domain adaptation strategy consists on transferring the knowledge learned from synthetic images to real-world scenarios. For this, the networks are firstly trained using pairs of synthetic images, which are captured at the same time by a pair of cameras in a virtual environment; and then, the learned weights of the networks are transferred to the real-world case, where the networks are retrained with a few real images. Different virtual 3D scenarios are generated to evaluate the relationship between the accuracy on the result and the similarity between virtual and real scenarios—similarity on both geometry of the objects contained in the scene as well as relative pose between camera and objects in the scene. Experimental results and comparisons are provided showing that the accuracy of all the evaluated networks for estimating the camera pose improves when the proposed domain adaptation strategy is used, highlighting the importance on the similarity between virtual-real scenarios.

Abstract: The most common tool for population-wide COVID-19 identification is the Reverse Transcription-Polymerase Chain Reaction test that detects the presence of the virus in the throat (or sputum) in swab samples. This test has a sensitivity between 59% and 71%. However, this test does not provide precise information regarding the extension of the pulmonary infection. Moreover, it has been proven that through the reading of a computed tomography (CT) scan, a clinician can provide a more complete perspective of the severity of the disease. Therefore, we propose a comprehensive system for fully-automated COVID-19 detection and lesion segmentation from CT scans, powered by deep learning strategies to support decision-making process for the diagnosis of COVID-19.