Debora Gil, Agnes Borras, Manuel Ballester, Francesc Carreras, Ruth Aris, Manuel Vazquez, et al. (2011). MIOCARDIA: Integrating cardiac function and muscular architecture for a better diagnosis. In Association for Computing Machinery (Ed.), 14th International Symposium on Applied Sciences in Biomedical and Communication Technologies. Barcelona, Spain.
Abstract: Deep understanding of myocardial structure of the heart would unravel crucial knowledge for clinical and medical procedures. The MIOCARDIA project is a multidisciplinary project in cooperation with l'Hospital de la Santa Creu i de Sant Pau, Clinica la Creu Blanca and Barcelona Supercomputing Center. The ultimate goal of this project is defining a computational model of the myocardium. The model takes into account the deep interrelation between the anatomy and the mechanics of the heart. The paper explains the workflow of the MIOCARDIA project. It also introduces a multiresolution reconstruction technique based on DT-MRI streamlining for simplified global myocardial model generation. Our reconstructions can restore the most complex myocardial structures and provides evidences of a global helical organization.
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Jaume Gibert, Ernest Valveny, Oriol Ramos Terrades, & Horst Bunke. (2011). Multiple Classifiers for Graph of Words Embedding. In Carlo Sansone, Josef Kittler, & Fabio Roli (Eds.), 10th International Conference on Multiple Classifier Systems (Vol. 6713, pp. 36–45). LNCS.
Abstract: During the last years, there has been an increasing interest in applying the multiple classifier framework to the domain of structural pattern recognition. Constructing base classifiers when the input patterns are graph based representations is not an easy problem. In this work, we make use of the graph embedding methodology in order to construct different feature vector representations for graphs. The graph of words embedding assigns a feature vector to every graph by counting unary and binary relations between node representatives and combining these pieces of information into a single vector. Selecting different node representatives leads to different vectorial representations and therefore to different base classifiers that can be combined. We experimentally show how this methodology significantly improves the classification of graphs with respect to single base classifiers.
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Pierluigi Casale, Oriol Pujol, & Petia Radeva. (2011). Approximate Convex Hulls Family for One-Class Cassification. In Carlo Sansone, Josef Kittler, & Fabio Roli (Eds.), 10th International Workshop on Multiple Classifier Systems (Vol. 6713, pp. 106–115). LNCS. Springer Berlin Heidelberg.
Abstract: In this work, a new method for one-class classification based on the Convex Hull geometric structure is proposed. The new method creates a family of convex hulls able to fit the geometrical shape of the training points. The increased computational cost due to the creation of the convex hull in multiple dimensions is circumvented using random projections. This provides an approximation of the original structure with multiple bi-dimensional views. In the projection planes, a mechanism for noisy points rejection has also been elaborated and evaluated. Results show that the approach performs considerably well with respect to the state the art in one-class classification.
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Miguel Angel Bautista, Oriol Pujol, Xavier Baro, & Sergio Escalera. (2011). Introducing the Separability Matrix for Error Correcting Output Codes Coding. In Carlo Sansone, Josef Kittler, & Fabio Roli (Eds.), 10th International conference on Multiple Classifier Systems (Vol. 6713, pp. 227–236). LNCS. Springer-Verlag Berlin Heidelberg.
Abstract: Error Correcting Output Codes (ECOC) have demonstrate to be a powerful tool for treating multi-class problems. Nevertheless, predefined ECOC designs may not benefit from Error-correcting principles for particular multi-class data. In this paper, we introduce the Separability matrix as a tool to study and enhance designs for ECOC coding. In addition, a novel problem-dependent coding design based on the Separability matrix is tested over a wide set of challenging multi-class problems, obtaining very satisfactory results.
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Eloi Puertas, Sergio Escalera, & Oriol Pujol. (2011). Multi-Class Multi-Scale Stacked Sequential Learning. In Carlo Sansone, Josef Kittler, & Fabio Roli (Eds.), 10th International Conference on Multiple Classifier Systems (Vol. 6713, pp. 197–206). Springer.
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Miguel Angel Bautista, Oriol Pujol, Xavier Baro, & Sergio Escalera. (2011). Introducing the Separability Matrix for Error Correcting Output Codes Coding. In Carlo Sansone, Josef Kittler, & Fabio Roli (Eds.), 10th International Conference on Multiple Classifier Systems (Vol. 6713, pp. 227–236). LNCS. Springer-Verlag Berlin, Heidelberg.
Abstract: Error Correcting Output Codes (ECOC) have demonstrate to be a powerful tool for treating multi-class problems. Nevertheless, predefined ECOC designs may not benefit from Error-correcting principles for particular multi-class data. In this paper, we introduce the Separability matrix as a tool to study and enhance designs for ECOC coding. In addition, a novel problem-dependent coding design based on the Separability matrix is tested over a wide set of challenging multi-class problems, obtaining very satisfactory results.
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Carles Sanchez. (2011). Tracheal ring detection in bronchoscopy (F. J. S. Debora Gil, Ed.) (Vol. 168). Master's thesis, , .
Abstract: Endoscopy is the process in which a camera is introduced inside a human.
Given that endoscopy provides realistic images (in contrast to other modalities) and allows non-invase minimal intervention procedures (which can aid in diagnosis and surgical interventions), its use has spreaded during last decades.
In this project we will focus on bronchoscopic procedures, during which the camera is introduced through the trachea in order to have a diagnostic of the patient. The diagnostic interventions are focused on: degree of stenosis (reduction in tracheal area), prosthesis or early diagnosis of tumors. In the first case, assessment of the luminal area and the calculation of the diameters of the tracheal rings are required. A main limitation is that all the process is done by hand,
which means that the doctor takes all the measurements and decisions just by looking at the screen. As far as we know there is no computational framework for helping the doctors in the diagnosis.
This project will consist of analysing bronchoscopic videos in order to extract useful information for the diagnostic of the degree of stenosis. In particular we will focus on segmentation of the tracheal rings. As a result of this project several strategies (for detecting tracheal rings) had been implemented in order to compare their performance.
Keywords: Bronchoscopy, tracheal ring, segmentation
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Jorge Bernal, F. Javier Sanchez, & Fernando Vilariño. (2011). Current Challenges on Polyp Detection in Colonoscopy Videos: From Region Segmentation to Region Classification. a Pattern Recognition-based Approach.ased Approach. In K. Djemal (Ed.), 2nd International Workshop on Medical Image Analysis and Descriptionfor Diagnosis Systems (pp. 62–71). SciTePress.
Abstract: In this paper we present our approach on real-time polyp detection in colonoscopy videos. Our method consists of three stages: Image Segmentation, Region Description and Image Classification. Taking into account the constraints of our project, we introduce our segmentation system that is based on the model of appearance of the polyp that we have defined after observing real videos from colonoscopy processes. The output of this stage will ideally be a low number of regions of which one of them should cover the whole polyp region (if there is one in the image). This regions will be described in terms of features and, as a result of a machine learning schema, classified based on the values that they have for the several features that we will use on their description. Although we are still on the early stages of the project, we present some preliminary segmentation results that indicates that we are going in a good direction.
Keywords: Medical Imaging, Colonoscopy, Pattern Recognition, Segmentation, Polyp Detection, Region Description, Machine Learning, Real-time.
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Joan M. Nuñez. (2011). Computer vision techniques for characterization of finger joints in X-ray image (Dr. Fernando Vilariño and Dra. Debora Gil, Ed.) (Vol. 165). Master's thesis, , .
Abstract: Rheumatoid arthritis (RA) is an autoimmune inflammatory type of arthritis which mainly affects hands on its first stages. Though it is a chronic disease and there is no cure for it, treatments require an accurate assessment of illness evolution. Such assessment is based on evaluation of hand X-ray images by using one of the several available semi-quantitative methods. This task requires highly trained medical personnel. That is why the automation of the assessment would allow professionals to save time and effort. Two stages are involved in this task. Firstly, the joint detection, afterwards, the joint characterization. Unlike the little existing previous work, this contribution clearly separates those two stages and sets the foundations of a modular assessment system focusing on the characterization stage. A hand joint dataset is created and an accurate data analysis is achieved in order to identify relevant features. Since the sclerosis and the lower bone were decided to be the most important features, different computer vision techniques were used in order to develop a detector system for both of them. Joint space width measures are provided and their correlation with Sharp-Van der Heijde is verified
Keywords: Rheumatoid arthritis, X-ray, Sharp Van der Heijde, joint characterization, sclerosis detection, bone detection, edge, ridge
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Sergio Escalera, David M.J. Tax, Oriol Pujol, Petia Radeva, & Robert P.W. Duin. (2011). Multi-Class Classification in Image Analysis Via Error-Correcting Output Codes. In H. Kawasnicka, & L.Jain (Eds.), Innovations in Intelligent Image Analysis (Vol. 339, pp. 7–29). Berlin: Springer Berlin Heidelberg.
Abstract: A common way to model multi-class classification problems is by means of Error-Correcting Output Codes (ECOC). Given a multi-class problem, the ECOC technique designs a codeword for each class, where each position of the code identifies the membership of the class for a given binary problem.A classification decision is obtained by assigning the label of the class with the closest code. In this paper, we overview the state-of-the-art on ECOC designs and test them in real applications. Results on different multi-class data sets show the benefits of using the ensemble of classifiers when categorizing objects in images.
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Sergio Vera, Debora Gil, Agnes Borras, F. Javier Sanchez, Frederic Perez, & Marius G. Linguraru. (2011). Computation and Evaluation of Medial Surfaces for Shape Representation of Abdominal Organs. In In H. Yoshida et al (Ed.), Workshop on Computational and Clinical Applications in Abdominal Imaging (Vol. 7029, pp. 223–230). Springer Berlin Heidelberg.
Abstract: Medial representations are powerful tools for describing and parameterizing the volumetric shape of anatomical structures. Existing methods show excellent results when applied to 2D objects, but their quality drops across dimensions. This paper contributes to the computation of medial manifolds in two aspects. First, we provide a standard scheme for the computation of medial manifolds that avoid degenerated medial axis segments; second, we introduce an energy based method which performs independently of the dimension. We evaluate quantitatively the performance of our method with respect to existing approaches, by applying them to synthetic shapes of known medial geometry. Finally, we show results on shape representation of multiple abdominal organs, exploring the use of medial manifolds for the representation of multi-organ relations.
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Farhan Riaz, Fernando Vilariño, Mario Dinis-Ribeiro, & Miguel Coimbraln. (2011). Identifying Potentially Cancerous Tissues in Chromoendoscopy Images. In and M. Hernandez J. M. S. J. Vitria (Ed.), 5th Iberian Conference on Pattern Recognition and Image Analysis (Vol. 6669, pp. 709–716). LNCS. Berlin: Springer.
Abstract: The dynamics of image acquisition conditions for gastroenterology imaging scenarios pose novel challenges for automatic computer assisted decision systems. Such systems should have the ability to mimic the tissue characterization of the physicians. In this paper, our objective is to compare some feature extraction methods to classify a Chromoendoscopy image into two different classes: Normal and Potentially cancerous. Results show that LoG filters generally give best classification accuracy among the other feature extraction methods considered.
Keywords: Endoscopy, Computer Assisted Diagnosis, Gradient.
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Nataliya Shapovalova, Wenjuan Gong, Marco Pedersoli, Xavier Roca, & Jordi Gonzalez. (2011). On Importance of Interactions and Context in Human Action Recognition. In and M. Hernandez J. M. S. J. Vitria (Ed.), 5th Iberian Conference on Pattern Recognition and Image Analysis (Vol. 6669, pp. 58–66). LNCS. Springer Berlin Heidelberg.
Abstract: This paper is focused on the automatic recognition of human events in static images. Popular techniques use knowledge of the human pose for inferring the action, and the most recent approaches tend to combine pose information with either knowledge of the scene or of the objects with which the human interacts. Our approach makes a step forward in this direction by combining the human pose with the scene in which the human is placed, together with the spatial relationships between humans and objects. Based on standard, simple descriptors like HOG and SIFT, recognition performance is enhanced when these three types of knowledge are taken into account. Results obtained in the PASCAL 2010 Action Recognition Dataset demonstrate that our technique reaches state-of-the-art results using simple descriptors and classifiers.
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Muhammad Anwer Rao, David Vazquez, & Antonio Lopez. (2011). Opponent Colors for Human Detection. In J. Vitria, J.M. Sanches, & M. Hernandez (Eds.), 5th Iberian Conference on Pattern Recognition and Image Analysis (Vol. 6669, pp. 363–370). LNCS. Berlin Heidelberg: Springer.
Abstract: Human detection is a key component in fields such as advanced driving assistance and video surveillance. However, even detecting non-occluded standing humans remains a challenge of intensive research. Finding good features to build human models for further detection is probably one of the most important issues to face. Currently, shape, texture and motion features have deserve extensive attention in the literature. However, color-based features, which are important in other domains (e.g., image categorization), have received much less attention. In fact, the use of RGB color space has become a kind of choice by default. The focus has been put in developing first and second order features on top of RGB space (e.g., HOG and co-occurrence matrices, resp.). In this paper we evaluate the opponent colors (OPP) space as a biologically inspired alternative for human detection. In particular, by feeding OPP space in the baseline framework of Dalal et al. for human detection (based on RGB, HOG and linear SVM), we will obtain better detection performance than by using RGB space. This is a relevant result since, up to the best of our knowledge, OPP space has not been previously used for human detection. This suggests that in the future it could be worth to compute co-occurrence matrices, self-similarity features, etc., also on top of OPP space, i.e., as we have done with HOG in this paper.
Keywords: Pedestrian Detection; Color; Part Based Models
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Jordi Vitria, Joao Sanchez, Miguel Raposo, & Mario Hernandez. (2011). Pattern Recognition and Image Analysis (J. Vitrià, J. Sanchez, M. Raposo, & M. Hernandez, Eds.) (Vol. 6669). Berlin: Springer-Verlag.
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