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Carlo Gatta, Oriol Pujol, Oriol Rodriguez-Leor, J. Mauri, & Petia Radeva. (2008). Robust Image-based IVUS Pullbacks Gating. In Proceedings 11th International ConferenceMedical Image Computing and Computer–Assisted Intervention (Vol. 5242, 518–525). LNCS.
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Carlo Gatta, Oriol Pujol, Oriol Rodriguez-Leor, J. M. Ferre, & Petia Radeva. (2009). Fast Rigid Registration of Vascular Structures in IVUS Sequences. IEEE Transactions on Information Technology in Biomedicine, 13(6), 106–1011.
Abstract: Intravascular ultrasound (IVUS) technology permits visualization of high-resolution images of internal vascular structures. IVUS is a unique image-guiding tool to display longitudinal view of the vessels, and estimate the length and size of vascular structures with the goal of accurate diagnosis. Unfortunately, due to pulsatile contraction and expansion of the heart, the captured images are affected by different motion artifacts that make visual inspection difficult. In this paper, we propose an efficient algorithm that aligns vascular structures and strongly reduces the saw-shaped oscillation, simplifying the inspection of longitudinal cuts; it reduces the motion artifacts caused by the displacement of the catheter in the short-axis plane and the catheter rotation due to vessel tortuosity. The algorithm prototype aligns 3.16 frames/s and clearly outperforms state-of-the-art methods with similar computational cost. The speed of the algorithm is crucial since it allows to inspect the corrected sequence during patient intervention. Moreover, we improved an indirect methodology for IVUS rigid registration algorithm evaluation.
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Carlo Gatta, Juan Diego Gomez, Francesco Ciompi, Oriol Rodriguez-Leor, & Petia Radeva. (2009). Toward robust myocardial blush grade estimation in contrast angiography. In 4th Iberian Conference on Pattern Recognition and Image Analysis (Vol. 5524, 249–256). LNCS. Springer Berlin Heidelberg.
Abstract: The assessment of Myocardial Blush Grade after primary angioplasty is a precious diagnostic tool to understand if the patient needs further medication or the use of specifics drugs. Unfortunately, the assessment of MBG is difficult for non highly specialized staff. Experimental data show that there is poor correlation between MBG assessment of low and high specialized staff, thus reducing its applicability. This paper proposes a method able to achieve an objective measure of MBG, or a set of parameters that correlates with the MBG. The method tracks the blush area starting from just one single frame tagged by the physician. As a consequence, the blush area is kept isolated from contaminating phenomena such as diaphragm and arteries movements. We also present a method to extract four parameters that are expected to correlate with the MBG. Preliminary results show that the method is capable of extracting interesting information regarding the behavior of the myocardial perfusion.
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Carlo Gatta, & Francesco Ciompi. (2014). Stacked Sequential Scale-Space Taylor Context. TPAMI - IEEE Transactions on Pattern Analysis and Machine Intelligence, 36(8), 1694–1700.
Abstract: We analyze sequential image labeling methods that sample the posterior label field in order to gather contextual information. We propose an effective method that extracts local Taylor coefficients from the posterior at different scales. Results show that our proposal outperforms state-of-the-art methods on MSRC-21, CAMVID, eTRIMS8 and KAIST2 data sets.
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Carlo Gatta, Eloi Puertas, & Oriol Pujol. (2011). Multi-Scale Stacked Sequential Learning. PR - Pattern Recognition, 44(10-11), 2414–2416.
Abstract: One of the most widely used assumptions in supervised learning is that data is independent and identically distributed. This assumption does not hold true in many real cases. Sequential learning is the discipline of machine learning that deals with dependent data such that neighboring examples exhibit some kind of relationship. In the literature, there are different approaches that try to capture and exploit this correlation, by means of different methodologies. In this paper we focus on meta-learning strategies and, in particular, the stacked sequential learning approach. The main contribution of this work is two-fold: first, we generalize the stacked sequential learning. This generalization reflects the key role of neighboring interactions modeling. Second, we propose an effective and efficient way of capturing and exploiting sequential correlations that takes into account long-range interactions by means of a multi-scale pyramidal decomposition of the predicted labels. Additionally, this new method subsumes the standard stacked sequential learning approach. We tested the proposed method on two different classification tasks: text lines classification in a FAQ data set and image classification. Results on these tasks clearly show that our approach outperforms the standard stacked sequential learning. Moreover, we show that the proposed method allows to control the trade-off between the detail and the desired range of the interactions.
Keywords: Stacked sequential learning; Multiscale; Multiresolution; Contextual classification
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Carlo Gatta, Adriana Romero, & Joost Van de Weijer. (2014). Unrolling loopy top-down semantic feedback in convolutional deep networks. In Workshop on Deep Vision: Deep Learning for Computer Vision (pp. 498–505).
Abstract: In this paper, we propose a novel way to perform top-down semantic feedback in convolutional deep networks for efficient and accurate image parsing. We also show how to add global appearance/semantic features, which have shown to improve image parsing performance in state-of-the-art methods, and was not present in previous convolutional approaches. The proposed method is characterised by an efficient training and a sufficiently fast testing. We use the well known SIFTflow dataset to numerically show the advantages provided by our contributions, and to compare with state-of-the-art image parsing convolutional based approaches.
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Carles Sanchez, F. Javier Sanchez, Antoni Rosell, & Debora Gil. (2012). An illumination model of the trachea appearance in videobronchoscopy images. In Image Analysis and Recognition (Vol. 7325, pp. 313–320). LNCS. Springer Berlin Heidelberg.
Abstract: Videobronchoscopy is a medical imaging technique that allows interactive navigation inside the respiratory pathways. This imaging modality provides realistic images and allows non-invasive minimal intervention procedures. Tracheal procedures are routinary interventions that require assessment of the percentage of obstructed pathway for injury (stenosis) detection. Visual assessment in videobronchoscopic sequences requires high expertise of trachea anatomy and is prone to human error.
This paper introduces an automatic method for the estimation of steneosed trachea percentage reduction in videobronchoscopic images. We look for tracheal rings , whose deformation determines the degree of obstruction. For ring extraction , we present a ring detector based on an illumination and appearance model. This model allows us to parametrise the ring detection. Finally, we can infer optimal estimation parameters for any video resolution.
Keywords: Bronchoscopy, tracheal ring, stenosis assesment, trachea appearance model, segmentation
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Carles Sanchez, Oriol Ramos Terrades, Patricia Marquez, Enric Marti, Jaume Rocarias, & Debora Gil. (2014). Evaluación automática de prácticas en Moodle para el aprendizaje autónomo en Ingenierías.
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Carles Sanchez, Oriol Ramos Terrades, Patricia Marquez, Enric Marti, J.Roncaries, & Debora Gil. (2015). Automatic evaluation of practices in Moodle for Self Learning in Engineering. JOTSE - Journal of Technology and Science Education, 97–106.
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Carles Sanchez, Miguel Viñas, Coen Antens, Agnes Borras, & Debora Gil. (2018). Back to Front Architecture for Diagnosis as a Service. In 20th International Symposium on Symbolic and Numeric Algorithms for Scientific Computing (pp. 343–346).
Abstract: Software as a Service (SaaS) is a cloud computing model in which a provider hosts applications in a server that customers use via internet. Since SaaS does not require to install applications on customers' own computers, it allows the use by multiple users of highly specialized software without extra expenses for hardware acquisition or licensing. A SaaS tailored for clinical needs not only would alleviate licensing costs, but also would facilitate easy access to new methods for diagnosis assistance. This paper presents a SaaS client-server architecture for Diagnosis as a Service (DaaS). The server is based on docker technology in order to allow execution of softwares implemented in different languages with the highest portability and scalability. The client is a content management system allowing the design of websites with multimedia content and interactive visualization of results allowing user editing. We explain a usage case that uses our DaaS as crowdsourcing platform in a multicentric pilot study carried out to evaluate the clinical benefits of a software for assessment of central airway obstruction.
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Carles Sanchez, Jorge Bernal, F. Javier Sanchez, Marta Diez-Ferrer, Antoni Rosell, & Debora Gil. (2015). Towards On-line Quantification of Tracheal Stenosis from Videobronchoscopy. In 6th International Conference on Information Processing in Computer-Assisted Interventions IPCAI2015 (Vol. 10, pp. 935–945).
Abstract: PURPOSE:
Lack of objective measurement of tracheal obstruction degree has a negative impact on the chosen treatment prone to lead to unnecessary repeated explorations and other scanners. Accurate computation of tracheal stenosis in videobronchoscopy would constitute a breakthrough for this noninvasive technique and a reduction in operation cost for the public health service.
METHODS:
Stenosis calculation is based on the comparison of the region delimited by the lumen in an obstructed frame and the region delimited by the first visible ring in a healthy frame. We propose a parametric strategy for the extraction of lumen and tracheal ring regions based on models of their geometry and appearance that guide a deformable model. To ensure a systematic applicability, we present a statistical framework to choose optimal parametric values and a strategy to choose the frames that minimize the impact of scope optical distortion.
RESULTS:
Our method has been tested in 40 cases covering different stenosed tracheas. Experiments report a non- clinically relevant [Formula: see text] of discrepancy in the calculated stenotic area and a computational time allowing online implementation in the operating room.
CONCLUSIONS:
Our methodology allows reliable measurements of airway narrowing in the operating room. To fully assess its clinical impact, a prospective clinical trial should be done.
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Carles Sanchez, Jorge Bernal, F. Javier Sanchez, Antoni Rosell, Marta Diez-Ferrer, & Debora Gil. (2015). Towards On-line Quantification of Tracheal Stenosis from Videobronchoscopy. IJCAR - International Journal of Computer Assisted Radiology and Surgery, 10(6), 935–945.
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Carles Sanchez, Jorge Bernal, Debora Gil, & F. Javier Sanchez. (2013). On-line lumen centre detection in gastrointestinal and respiratory endoscopy. In Klaus Miguel Angel and Drechsler Stefan and González Ballester Raj and Wesarg Cristina and Shekhar Marius George and Oyarzun Laura M. and L. Erdt (Ed.), Second International Workshop Clinical Image-Based Procedures (Vol. 8361, pp. 31–38). LNCS. Springer International Publishing.
Abstract: We present in this paper a novel lumen centre detection for gastrointestinal and respiratory endoscopic images. The proposed method is based on the appearance and geometry of the lumen, which we defined as the darkest image region which centre is a hub of image gradients. Experimental results validated on the first public annotated gastro-respiratory database prove the reliability of the method for a wide range of images (with precision over 95 %).
Keywords: Lumen centre detection; Bronchoscopy; Colonoscopy
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Carles Sanchez, Debora Gil, T. Gache, N. Koufos, Marta Diez-Ferrer, & Antoni Rosell. (2016). SENSA: a System for Endoscopic Stenosis Assessment. In 28th Conference of the international Society for Medical Innovation and Technology.
Abstract: Documenting the severity of a static or dynamic Central Airway Obstruction (CAO) is crucial to establish proper diagnosis and treatment, predict possible treatment effects and better follow-up the patients. The subjective visual evaluation of a stenosis during video-bronchoscopy still remains the most common way to assess a CAO in spite of a consensus among experts for a need to standardize all calculations [1].
The Computer Vision Center in cooperation with the «Hospital de Bellvitge», has developed a System for Endoscopic Stenosis Assessment (SENSA), which computes CAO directly by analyzing standard bronchoscopic data without the need of using other imaging tecnologies.
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Carles Sanchez, Debora Gil, R. Tazi, Jorge Bernal, Y. Ruiz, L. Planas, et al. (2015). Quasi-real time digital assessment of Central Airway Obstruction. In 3rd European congress for bronchology and interventional pulmonology ECBIP2015.
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