|
|
Michael Villamizar, A. Sanfeliu, & Juan Andrade. (2006). Orientation Invariant Features for Multiclass Object Recognition.
|
|
|
|
Michal Drozdzal. (2014). Sequential image analysis for computer-aided wireless endoscopy (Petia Radeva, Ed.). Ph.D. thesis, Ediciones Graficas Rey, .
Abstract: Wireless Capsule Endoscopy (WCE) is a technique for inner-visualization of the entire small intestine and, thus, offers an interesting perspective on intestinal motility. The two major drawbacks of this technique are: 1) huge amount of data acquired by WCE makes the motility analysis tedious and 2) since the capsule is the first tool that offers complete inner-visualization of the small intestine,the exact importance of the observed events is still an open issue. Therefore, in this thesis, a novel computer-aided system for intestinal motility analysis is presented. The goal of the system is to provide an easily-comprehensible visual description of motility-related intestinal events to a physician. In order to do so, several tools based either on computer vision concepts or on machine learning techniques are presented. A method for transforming 3D video signal to a holistic image of intestinal motility, called motility bar, is proposed. The method calculates the optimal mapping from video into image from the intestinal motility point of view.
To characterize intestinal motility, methods for automatic extraction of motility information from WCE are presented. Two of them are based on the motility bar and two of them are based on frame-per-frame analysis. In particular, four algorithms dealing with the problems of intestinal contraction detection, lumen size estimation, intestinal content characterization and wrinkle frame detection are proposed and validated. The results of the algorithms are converted into sequential features using an online statistical test. This test is designed to work with multivariate data streams. To this end, we propose a novel formulation of concentration inequality that is introduced into a robust adaptive windowing algorithm for multivariate data streams. The algorithm is used to obtain robust representation of segments with constant intestinal motility activity. The obtained sequential features are shown to be discriminative in the problem of abnormal motility characterization.
Finally, we tackle the problem of efficient labeling. To this end, we incorporate active learning concepts to the problems present in WCE data and propose two approaches. The first one is based the concepts of sequential learning and the second one adapts the partition-based active learning to an error-free labeling scheme. All these steps are sufficient to provide an extensive visual description of intestinal motility that can be used by an expert as decision support system.
|
|
|
|
Michal Drozdzal, Jordi Vitria, Santiago Segui, Carolina Malagelada, Fernando Azpiroz, & Petia Radeva. (2014). Intestinal event segmentation for endoluminal video analysis. In 21st IEEE International Conference on Image Processing (pp. 3592–3596).
|
|
|
|
Michal Drozdzal, Laura Igual, Jordi Vitria, Petia Radeva, Carolina Malagelada, & Fernando Azpiroz. (2010). SIFT flow-based Sequences Alignment. In Medical Image Computing in Catalunya: Graduate Student Workshop (7–8).
|
|
|
|
Michal Drozdzal, Laura Igual, Petia Radeva, Jordi Vitria, Carolina Malagelada, & Fernando Azpiroz. (2010). Aligning Endoluminal Scene Sequences in Wireless Capsule Endoscopy. In IEEE Computer Society Workshop on Mathematical Methods in Biomedical Image Analysis (117–124).
Abstract: Intestinal motility analysis is an important examination in detection of various intestinal malfunctions. One of the big challenges of automatic motility analysis is how to compare sequence of images and extract dynamic paterns taking into account the high deformability of the intestine wall as well as the capsule motion. From clinical point of view the ability to align endoluminal scene sequences will help to find regions of similar intestinal activity and in this way will provide a valuable information on intestinal motility problems. This work, for first time, addresses the problem of aligning endoluminal sequences taking into account motion and structure of the intestine. To describe motility in the sequence, we propose different descriptors based on the Sift Flow algorithm, namely: (1) Histograms of Sift Flow Directions to describe the flow course, (2) Sift Descriptors to represent image intestine structure and (3) Sift Flow Magnitude to quantify intestine deformation. We show that the merge of all three descriptors provides robust information on sequence description in terms of motility. Moreover, we develop a novel methodology to rank the intestinal sequences based on the expert feedback about relevance of the results. The experimental results show that the selected descriptors are useful in the alignment and similarity description and the proposed method allows the analysis of the WCE.
|
|
|
|
Michal Drozdzal, Petia Radeva, Santiago Segui, Laura Igual, Carolina Malagelada, Fernando Azpiroz, et al. (2012). System and Method for Improving a Discriminative Model.
|
|
|
|
Michal Drozdzal, Petia Radeva, Santiago Segui, Laura Igual, Carolina Malagelada, Fernando Azpiroz, et al. (2012). System and method for automatic detection of in vivo contraction video sequences.
Abstract: Publication date: 2012/3/8
|
|
|
|
Michal Drozdzal, Santiago Segui, Carolina Malagelada, Fernando Azpiroz, Jordi Vitria, & Petia Radeva. (2011). Interactive Labeling of WCE Images. In J. Vitria, J. M. R. Sanches, & M. Hernández (Eds.), 5th Iberian Conference on Pattern Recognition and Image Analysis (Vol. 6669, pp. 143–150). Springer.
Abstract: A high quality labeled training set is necessary for any supervised machine learning algorithm. Labeling of the data can be a very expensive process, specially while dealing with data of high variability and complexity. A good example of such data are the videos from Wireless Capsule Endoscopy. Building a representative WCE data set means many videos to be labeled by an expert. The problem that occurs is the data diversity, in the space of the features, from different WCE studies. That means that when new data arrives it is highly probable that it will not be represented in the training set, thus getting a high probability of performing an error when applying machine learning schemes. In this paper an interactive labeling scheme that allows reducing expert effort in the labeling process is presented. It is shown that the number of human interventions can be significantly reduced. The proposed system allows the annotation of informative/non-informative frames of the WCE video with less than 100 clicks
|
|
|
|
Michal Drozdzal, Santiago Segui, Carolina Malagelada, Fernando Azpiroz, & Petia Radeva. (2013). Adaptable image cuts for motility inspection using WCE. CMIG - Computerized Medical Imaging and Graphics, 37(1), 72–80.
Abstract: The Wireless Capsule Endoscopy (WCE) technology allows the visualization of the whole small intestine tract. Since the capsule is freely moving, mainly by the means of peristalsis, the data acquired during the study gives a lot of information about the intestinal motility. However, due to: (1) huge amount of frames, (2) complex intestinal scene appearance and (3) intestinal dynamics that make difficult the visualization of the small intestine physiological phenomena, the analysis of the WCE data requires computer-aided systems to speed up the analysis. In this paper, we propose an efficient algorithm for building a novel representation of the WCE video data, optimal for motility analysis and inspection. The algorithm transforms the 3D video data into 2D longitudinal view by choosing the most informative, from the intestinal motility point of view, part of each frame. This step maximizes the lumen visibility in its longitudinal extension. The task of finding “the best longitudinal view” has been defined as a cost function optimization problem which global minimum is obtained by using Dynamic Programming. Validation on both synthetic data and WCE data shows that the adaptive longitudinal view is a good alternative to the traditional motility analysis done by video analysis. The proposed novel data representation a new, holistic insight into the small intestine motility, allowing to easily define and analyze motility events that are difficult to spot by analyzing WCE video. Moreover, the visual inspection of small intestine motility is 4 times faster then by means of video skimming of the WCE.
|
|
|
|
Michal Drozdzal, Santiago Segui, Petia Radeva, Carolina Malagelada, Fernando Azpiroz, & Jordi Vitria. (2013). An Application for Efficient Error-Free Labeling of Medical Images. In Multimodal Interaction in Image and Video Applications (Vol. 48, pp. 1–16). Springer Berlin Heidelberg.
Abstract: In this chapter we describe an application for efficient error-free labeling of medical images. In this scenario, the compilation of a complete training set for building a realistic model of a given class of samples is not an easy task, making the process tedious and time consuming. For this reason, there is a need for interactive labeling applications that minimize the effort of the user while providing error-free labeling. We propose a new algorithm that is based on data similarity in feature space. This method actively explores data in order to find the best label-aligned clustering and exploits it to reduce the labeler effort, that is measured by the number of “clicks. Moreover, error-free labeling is guaranteed by the fact that all data and their labels proposals are visually revised by en expert.
|
|
|
|
Michal Drozdzal, Santiago Segui, Petia Radeva, Carolina Malagelada, Fernando Azpiroz, & Jordi Vitria. (2015). Motility bar: a new tool for motility analysis of endoluminal videos. CBM - Computers in Biology and Medicine, 65, 320–330.
Abstract: Wireless Capsule Endoscopy (WCE) provides a new perspective of the small intestine, since it enables, for the first time, visualization of the entire organ. However, the long visual video analysis time, due to the large number of data in a single WCE study, was an important factor impeding the widespread use of the capsule as a tool for intestinal abnormalities detection. Therefore, the introduction of WCE triggered a new field for the application of computational methods, and in particular, of computer vision. In this paper, we follow the computational approach and come up with a new perspective on the small intestine motility problem. Our approach consists of three steps: first, we review a tool for the visualization of the motility information contained in WCE video; second, we propose algorithms for the characterization of two motility building-blocks: contraction detector and lumen size estimation; finally, we introduce an approach to detect segments of stable motility behavior. Our claims are supported by an evaluation performed with 10 WCE videos, suggesting that our methods ably capture the intestinal motility information.
Keywords: Small intestine; Motility; WCE; Computer vision; Image classification
|
|
|
|
Michal Drozdzal, Santiago Segui, Petia Radeva, Jordi Vitria, & Laura Igual. (2011). System and Method for Displaying Motility Events in an in Vivo Image Stream.
|
|
|
|
Mickael Cormier, Andreas Specker, Julio C. S. Jacques, Lucas Florin, Jurgen Metzler, Thomas B. Moeslund, et al. (2023). UPAR Challenge: Pedestrian Attribute Recognition and Attribute-based Person Retrieval – Dataset, Design, and Results. In 2023 IEEE/CVF Winter Conference on Applications of Computer Vision Workshops (pp. 166–175).
Abstract: In civilian video security monitoring, retrieving and tracking a person of interest often rely on witness testimony and their appearance description. Deployed systems rely on a large amount of annotated training data and are expected to show consistent performance in diverse areas and gen-eralize well between diverse settings w.r.t. different view-points, illumination, resolution, occlusions, and poses for indoor and outdoor scenes. However, for such generalization, the system would require a large amount of various an-notated data for training and evaluation. The WACV 2023 Pedestrian Attribute Recognition and Attributed-based Per-son Retrieval Challenge (UPAR-Challenge) aimed to spot-light the problem of domain gaps in a real-world surveil-lance context and highlight the challenges and limitations of existing methods. The UPAR dataset, composed of 40 important binary attributes over 12 attribute categories across four datasets, was extended with data captured from a low-flying UAV from the P-DESTRE dataset. To this aim, 0.6M additional annotations were manually labeled and vali-dated. Each track evaluated the robustness of the competing methods to domain shifts by training on limited data from a specific domain and evaluating using data from unseen do-mains. The challenge attracted 41 registered participants, but only one team managed to outperform the baseline on one track, emphasizing the task's difficulty. This work de-scribes the challenge design, the adopted dataset, obtained results, as well as future directions on the topic.
|
|
|
|
Mickael Coustaty, & Alicia Fornes. (2023). Document Analysis and Recognition – ICDAR 2023 Workshops (Vol. 14194). LNCS.
|
|
|
|
Miguel Angel Bautista, Antonio Hernandez, Sergio Escalera, Laura Igual, Oriol Pujol, Josep Moya, et al. (2016). A Gesture Recognition System for Detecting Behavioral Patterns of ADHD. TSMCB - IEEE Transactions on System, Man and Cybernetics, Part B, 46(1), 136–147.
Abstract: We present an application of gesture recognition using an extension of Dynamic Time Warping (DTW) to recognize behavioural patterns of Attention Deficit Hyperactivity Disorder (ADHD). We propose an extension of DTW using one-class classifiers in order to be able to encode the variability of a gesture category, and thus, perform an alignment between a gesture sample and a gesture class. We model the set of gesture samples of a certain gesture category using either GMMs or an approximation of Convex Hulls. Thus, we add a theoretical contribution to classical warping path in DTW by including local modeling of intra-class gesture variability. This methodology is applied in a clinical context, detecting a group of ADHD behavioural patterns defined by experts in psychology/psychiatry, to provide support to clinicians in the diagnose procedure. The proposed methodology is tested on a novel multi-modal dataset (RGB plus Depth) of ADHD children recordings with behavioural patterns. We obtain satisfying results when compared to standard state-of-the-art approaches in the DTW context.
Keywords: Gesture Recognition; ADHD; Gaussian Mixture Models; Convex Hulls; Dynamic Time Warping; Multi-modal RGB-Depth data
|
|
