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Clementine Decamps, Alexis Arnaud, Florent Petitprez, Mira Ayadi, Aurelia Baures, Lucile Armenoult, et al. (2021). DECONbench: a benchmarking platform dedicated to deconvolution methods for tumor heterogeneity quantification. BMC Bioinformatics, 22, 473.
Abstract: Quantification of tumor heterogeneity is essential to better understand cancer progression and to adapt therapeutic treatments to patient specificities. Bioinformatic tools to assess the different cell populations from single-omic datasets as bulk transcriptome or methylome samples have been recently developed, including reference-based and reference-free methods. Improved methods using multi-omic datasets are yet to be developed in the future and the community would need systematic tools to perform a comparative evaluation of these algorithms on controlled data.
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Hugo Bertiche, Meysam Madadi, & Sergio Escalera. (2021). PBNS: Physically Based Neural Simulation for Unsupervised Garment Pose Space Deformation. ACM Transactions on Graphics, 40(6), 1–14.
Abstract: We present a methodology to automatically obtain Pose Space Deformation (PSD) basis for rigged garments through deep learning. Classical approaches rely on Physically Based Simulations (PBS) to animate clothes. These are general solutions that, given a sufficiently fine-grained discretization of space and time, can achieve highly realistic results. However, they are computationally expensive and any scene modification prompts the need of re-simulation. Linear Blend Skinning (LBS) with PSD offers a lightweight alternative to PBS, though, it needs huge volumes of data to learn proper PSD. We propose using deep learning, formulated as an implicit PBS, to unsupervisedly learn realistic cloth Pose Space Deformations in a constrained scenario: dressed humans. Furthermore, we show it is possible to train these models in an amount of time comparable to a PBS of a few sequences. To the best of our knowledge, we are the first to propose a neural simulator for cloth.
While deep-based approaches in the domain are becoming a trend, these are data-hungry models. Moreover, authors often propose complex formulations to better learn wrinkles from PBS data. Supervised learning leads to physically inconsistent predictions that require collision solving to be used. Also, dependency on PBS data limits the scalability of these solutions, while their formulation hinders its applicability and compatibility. By proposing an unsupervised methodology to learn PSD for LBS models (3D animation standard), we overcome both of these drawbacks. Results obtained show cloth-consistency in the animated garments and meaningful pose-dependant folds and wrinkles. Our solution is extremely efficient, handles multiple layers of cloth, allows unsupervised outfit resizing and can be easily applied to any custom 3D avatar.
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Anastasios Doulamis, Nikolaos Doulamis, Marco Bertini, Jordi Gonzalez, & Thomas B. Moeslund. (2016). Introduction to the Special Issue on the Analysis and Retrieval of Events/Actions and Workflows in Video Streams. MTAP - Multimedia Tools and Applications, 75(22), 14985–14990.
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Raquel Justo, Leila Ben Letaifa, Cristina Palmero, Eduardo Gonzalez-Fraile, Anna Torp Johansen, Alain Vazquez, et al. (2020). Analysis of the Interaction between Elderly People and a Simulated Virtual Coach, Journal of Ambient Intelligence and Humanized Computing. AIHC - Journal of Ambient Intelligence and Humanized Computing, 11(12), 6125–6140.
Abstract: The EMPATHIC project develops and validates new interaction paradigms for personalized virtual coaches (VC) to promote healthy and independent aging. To this end, the work presented in this paper is aimed to analyze the interaction between the EMPATHIC-VC and the users. One of the goals of the project is to ensure an end-user driven design, involving senior users from the beginning and during each phase of the project. Thus, the paper focuses on some sessions where the seniors carried out interactions with a Wizard of Oz driven, simulated system. A coaching strategy based on the GROW model was used throughout these sessions so as to guide interactions and engage the elderly with the goals of the project. In this interaction framework, both the human and the system behavior were analyzed. The way the wizard implements the GROW coaching strategy is a key aspect of the system behavior during the interaction. The language used by the virtual agent as well as his or her physical aspect are also important cues that were analyzed. Regarding the user behavior, the vocal communication provides information about the speaker’s emotional status, that is closely related to human behavior and which can be extracted from the speech and language analysis. In the same way, the analysis of the facial expression, gazes and gestures can provide information on the non verbal human communication even when the user is not talking. In addition, in order to engage senior users, their preferences and likes had to be considered. To this end, the effect of the VC on the users was gathered by means of direct questionnaires. These analyses have shown a positive and calm behavior of users when interacting with the simulated virtual coach as well as some difficulties of the system to develop the proposed coaching strategy.
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Wenlong Deng, Yongli Mou, Takahiro Kashiwa, Sergio Escalera, Kohei Nagai, Kotaro Nakayama, et al. (2020). Vision based Pixel-level Bridge Structural Damage Detection Using a Link ASPP Network. AC - Automation in Construction, 110, 102973.
Abstract: Structural Health Monitoring (SHM) has greatly benefited from computer vision. Recently, deep learning approaches are widely used to accurately estimate the state of deterioration of infrastructure. In this work, we focus on the problem of bridge surface structural damage detection, such as delamination and rebar exposure. It is well known that the quality of a deep learning model is highly dependent on the quality of the training dataset. Bridge damage detection, our application domain, has the following main challenges: (i) labeling the damages requires knowledgeable civil engineering professionals, which makes it difficult to collect a large annotated dataset; (ii) the damage area could be very small, whereas the background area is large, which creates an unbalanced training environment; (iii) due to the difficulty to exactly determine the extension of the damage, there is often a variation among different labelers who perform pixel-wise labeling. In this paper, we propose a novel model for bridge structural damage detection to address the first two challenges. This paper follows the idea of an atrous spatial pyramid pooling (ASPP) module that is designed as a novel network for bridge damage detection. Further, we introduce the weight balanced Intersection over Union (IoU) loss function to achieve accurate segmentation on a highly unbalanced small dataset. The experimental results show that (i) the IoU loss function improves the overall performance of damage detection, as compared to cross entropy loss or focal loss, and (ii) the proposed model has a better ability to detect a minority class than other light segmentation networks.
Keywords: Semantic image segmentation; Deep learning
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