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Karim Lekadir; Alfiia Galimzianova; Angels Betriu; Maria del Mar Vila; Laura Igual; Daniel L. Rubin; Elvira Fernandez-Giraldez; Petia Radeva; Sandy Napel |
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A Convolutional Neural Network for Automatic Characterization of Plaque Composition in Carotid Ultrasound |
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2017 |
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IEEE Journal Biomedical and Health Informatics |
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J-BHI |
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21 |
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1 |
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48-55 |
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Characterization of carotid plaque composition, more specifically the amount of lipid core, fibrous tissue, and calcified tissue, is an important task for the identification of plaques that are prone to rupture, and thus for early risk estimation of cardiovascular and cerebrovascular events. Due to its low costs and wide availability, carotid ultrasound has the potential to become the modality of choice for plaque characterization in clinical practice. However, its significant image noise, coupled with the small size of the plaques and their complex appearance, makes it difficult for automated techniques to discriminate between the different plaque constituents. In this paper, we propose to address this challenging problem by exploiting the unique capabilities of the emerging deep learning framework. More specifically, and unlike existing works which require a priori definition of specific imaging features or thresholding values, we propose to build a convolutional neural network (CNN) that will automatically extract from the images the information that is optimal for the identification of the different plaque constituents. We used approximately 90 000 patches extracted from a database of images and corresponding expert plaque characterizations to train and to validate the proposed CNN. The results of cross-validation experiments show a correlation of about 0.90 with the clinical assessment for the estimation of lipid core, fibrous cap, and calcified tissue areas, indicating the potential of deep learning for the challenging task of automatic characterization of plaque composition in carotid ultrasound. |
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MILAB; no menciona |
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no |
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Admin @ si @ LGB2017 |
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2931 |
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I. Sorodoc; S. Pezzelle; A. Herbelot; Mariella Dimiccoli; R. Bernardi |
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Title |
Learning quantification from images: A structured neural architecture |
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Journal Article |
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2018 |
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Natural Language Engineering |
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NLE |
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24 |
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3 |
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363-392 |
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Major advances have recently been made in merging language and vision representations. Most tasks considered so far have confined themselves to the processing of objects and lexicalised relations amongst objects (content words). We know, however, that humans (even pre-school children) can abstract over raw multimodal data to perform certain types of higher level reasoning, expressed in natural language by function words. A case in point is given by their ability to learn quantifiers, i.e. expressions like few, some and all. From formal semantics and cognitive linguistics, we know that quantifiers are relations over sets which, as a simplification, we can see as proportions. For instance, in most fish are red, most encodes the proportion of fish which are red fish. In this paper, we study how well current neural network strategies model such relations. We propose a task where, given an image and a query expressed by an object–property pair, the system must return a quantifier expressing which proportions of the queried object have the queried property. Our contributions are twofold. First, we show that the best performance on this task involves coupling state-of-the-art attention mechanisms with a network architecture mirroring the logical structure assigned to quantifiers by classic linguistic formalisation. Second, we introduce a new balanced dataset of image scenarios associated with quantification queries, which we hope will foster further research in this area. |
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MILAB; no menciona |
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Admin @ si @ SPH2018 |
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3021 |
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Mireia Forns-Nadal; Federico Sem; Anna Mane; Laura Igual; Dani Guinart; Oscar Vilarroya |
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Increased Nucleus Accumbens Volume in First-Episode Psychosis |
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2017 |
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Psychiatry Research-Neuroimaging |
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PRN |
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263 |
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57-60 |
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Nucleus accumbens has been reported as a key structure in the neurobiology of schizophrenia. Studies analyzing structural abnormalities have shown conflicting results, possibly related to confounding factors. We investigated the nucleus accumbens volume using manual delimitation in first-episode psychosis (FEP) controlling for age, cannabis use and medication. Thirty-one FEP subjects who were naive or minimally exposed to antipsychotics and a control group were MRI scanned and clinically assessed from baseline to 6 months of follow-up. FEP showed increased relative and total accumbens volumes. Clinical correlations with negative symptoms, duration of untreated psychosis and cannabis use were not significant. |
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MILAB; no menciona |
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no |
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Admin @ si @ FSM2017 |
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3028 |
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Mariella Dimiccoli; Cathal Gurrin; David J. Crandall; Xavier Giro; Petia Radeva |
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Introduction to the special issue: Egocentric Vision and Lifelogging |
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2018 |
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Journal of Visual Communication and Image Representation |
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JVCIR |
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55 |
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352-353 |
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MILAB; no proj |
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Admin @ si @ DGC2018 |
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3187 |
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Md. Mostafa Kamal Sarker; Hatem A. Rashwan; Farhan Akram; Vivek Kumar Singh; Syeda Furruka Banu; Forhad U H Chowdhury; Kabir Ahmed Choudhury; Sylvie Chambon; Petia Radeva; Domenec Puig; Mohamed Abdel-Nasser |
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SLSNet: Skin lesion segmentation using a lightweight generative adversarial network |
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2021 |
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Expert Systems With Applications |
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ESWA |
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183 |
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115433 |
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The determination of precise skin lesion boundaries in dermoscopic images using automated methods faces many challenges, most importantly, the presence of hair, inconspicuous lesion edges and low contrast in dermoscopic images, and variability in the color, texture and shapes of skin lesions. Existing deep learning-based skin lesion segmentation algorithms are expensive in terms of computational time and memory. Consequently, running such segmentation algorithms requires a powerful GPU and high bandwidth memory, which are not available in dermoscopy devices. Thus, this article aims to achieve precise skin lesion segmentation with minimum resources: a lightweight, efficient generative adversarial network (GAN) model called SLSNet, which combines 1-D kernel factorized networks, position and channel attention, and multiscale aggregation mechanisms with a GAN model. The 1-D kernel factorized network reduces the computational cost of 2D filtering. The position and channel attention modules enhance the discriminative ability between the lesion and non-lesion feature representations in spatial and channel dimensions, respectively. A multiscale block is also used to aggregate the coarse-to-fine features of input skin images and reduce the effect of the artifacts. SLSNet is evaluated on two publicly available datasets: ISBI 2017 and the ISIC 2018. Although SLSNet has only 2.35 million parameters, the experimental results demonstrate that it achieves segmentation results on a par with the state-of-the-art skin lesion segmentation methods with an accuracy of 97.61%, and Dice and Jaccard similarity coefficients of 90.63% and 81.98%, respectively. SLSNet can run at more than 110 frames per second (FPS) in a single GTX1080Ti GPU, which is faster than well-known deep learning-based image segmentation models, such as FCN. Therefore, SLSNet can be used for practical dermoscopic applications. |
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MILAB; no proj |
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Admin @ si @ SRA2021 |
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3633 |
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