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Simeon Petkov; Xavier Carrillo; Petia Radeva; Carlo Gatta |
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Title |
Diaphragm border detection in coronary X-ray angiographies: New method and applications |
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2014 |
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Computerized Medical Imaging and Graphics |
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CMIG |
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38 |
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4 |
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296-305 |
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X-ray angiography is widely used in cardiac disease diagnosis during or prior to intravascular interventions. The diaphragm motion and the heart beating induce gray-level changes, which are one of the main obstacles in quantitative analysis of myocardial perfusion. In this paper we focus on detecting the diaphragm border in both single images or whole X-ray angiography sequences. We show that the proposed method outperforms state of the art approaches. We extend a previous publicly available data set, adding new ground truth data. We also compose another set of more challenging images, thus having two separate data sets of increasing difficulty. Finally, we show three applications of our method: (1) a strategy to reduce false positives in vessel enhanced images; (2) a digital diaphragm removal algorithm; (3) an improvement in Myocardial Blush Grade semi-automatic estimation. |
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MILAB; LAMP; 600.079 |
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Admin @ si @ PCR2014 |
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2468 |
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Author |
Pierluigi Casale; Oriol Pujol; Petia Radeva |
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Title |
Approximate polytope ensemble for one-class classification |
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Journal Article |
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Year |
2014 |
Publication |
Pattern Recognition |
Abbreviated Journal |
PR |
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47 |
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2 |
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854-864 |
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One-class classification; Convex hull; High-dimensionality; Random projections; Ensemble learning |
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In this work, a new one-class classification ensemble strategy called approximate polytope ensemble is presented. The main contribution of the paper is threefold. First, the geometrical concept of convex hull is used to define the boundary of the target class defining the problem. Expansions and contractions of this geometrical structure are introduced in order to avoid over-fitting. Second, the decision whether a point belongs to the convex hull model in high dimensional spaces is approximated by means of random projections and an ensemble decision process. Finally, a tiling strategy is proposed in order to model non-convex structures. Experimental results show that the proposed strategy is significantly better than state of the art one-class classification methods on over 200 datasets. |
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MILAB; 605.203 |
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Admin @ si @ CPR2014a |
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2469 |
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Author |
Francesco Ciompi; Oriol Pujol; Petia Radeva |
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ECOC-DRF: Discriminative random fields based on error correcting output codes |
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Journal Article |
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2014 |
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Pattern Recognition |
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PR |
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47 |
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6 |
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2193-2204 |
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Discriminative random fields; Error-correcting output codes; Multi-class classification; Graphical models |
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We present ECOC-DRF, a framework where potential functions for Discriminative Random Fields are formulated as an ensemble of classifiers. We introduce the label trick, a technique to express transitions in the pairwise potential as meta-classes. This allows to independently learn any possible transition between labels without assuming any pre-defined model. The Error Correcting Output Codes matrix is used as ensemble framework for the combination of margin classifiers. We apply ECOC-DRF to a large set of classification problems, covering synthetic, natural and medical images for binary and multi-class cases, outperforming state-of-the art in almost all the experiments. |
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LAMP; HuPBA; MILAB; 605.203; 600.046; 601.043; 600.079 |
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Admin @ si @ CPR2014b |
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2470 |
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Author |
Frederic Sampedro; Sergio Escalera; Anna Domenech; Ignasi Carrio |
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Title |
Automatic Tumor Volume Segmentation in Whole-Body PET/CT Scans: A Supervised Learning Approach Source |
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2015 |
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Journal of Medical Imaging and Health Informatics |
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JMIHI |
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5 |
Issue |
2 |
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192-201 |
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CONTEXTUAL CLASSIFICATION; PET/CT; SUPERVISED LEARNING; TUMOR SEGMENTATION; WHOLE BODY |
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Whole-body 3D PET/CT tumoral volume segmentation provides relevant diagnostic and prognostic information in clinical oncology and nuclear medicine. Carrying out this procedure manually by a medical expert is time consuming and suffers from inter- and intra-observer variabilities. In this paper, a completely automatic approach to this task is presented. First, the problem is stated and described both in clinical and technological terms. Then, a novel supervised learning segmentation framework is introduced. The segmentation by learning approach is defined within a Cascade of Adaboost classifiers and a 3D contextual proposal of Multiscale Stacked Sequential Learning. Segmentation accuracy results on 200 Breast Cancer whole body PET/CT volumes show mean 49% sensitivity, 99.993% specificity and 39% Jaccard overlap Index, which represent good performance results both at the clinical and technological level. |
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HuPBA;MILAB |
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Admin @ si @ SED2015 |
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2584 |
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Author |
Frederic Sampedro; Anna Domenech; Sergio Escalera |
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Title |
Static and dynamic computational cancer spread quantification in whole body FDG-PET/CT scans |
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Year |
2014 |
Publication |
Journal of Medical Imaging and Health Informatics |
Abbreviated Journal |
JMIHI |
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4 |
Issue |
6 |
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825-831 |
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CANCER SPREAD; COMPUTER AIDED DIAGNOSIS; MEDICAL IMAGING; TUMOR QUANTIFICATION |
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In this work we address the computational cancer spread quantification scenario in whole body FDG-PET/CT scans. At the static level, this setting can be modeled as a clustering problem on the set of 3D connected components of the whole body PET tumoral segmentation mask carried out by nuclear medicine physicians. At the dynamic level, and ad-hoc algorithm is proposed in order to quantify the cancer spread time evolution which, when combined with other existing indicators, gives rise to the metabolic tumor volume-aggressiveness-spread time evolution chart, a novel tool that we claim that would prove useful in nuclear medicine and oncological clinical or research scenarios. Good performance results of the proposed methodologies both at the clinical and technological level are shown using a dataset of 48 segmented whole body FDG-PET/CT scans. |
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HuPBA;MILAB |
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Admin @ si @ SDE2014b |
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2548 |
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