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Jorge Bernal; F. Javier Sanchez; Gloria Fernandez Esparrach; Debora Gil; Cristina Rodriguez de Miguel; Fernando Vilariño |
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Title |
WM-DOVA Maps for Accurate Polyp Highlighting in Colonoscopy: Validation vs. Saliency Maps from Physicians |
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Journal Article |
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2015 |
Publication |
Computerized Medical Imaging and Graphics |
Abbreviated Journal |
CMIG |
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43 |
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99-111 |
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Keywords |
Polyp localization; Energy Maps; Colonoscopy; Saliency; Valley detection |
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Abstract |
We introduce in this paper a novel polyp localization method for colonoscopy videos. Our method is based on a model of appearance for polyps which defines polyp boundaries in terms of valley information. We propose the integration of valley information in a robust way fostering complete, concave and continuous boundaries typically associated to polyps. This integration is done by using a window of radial sectors which accumulate valley information to create WMDOVA1 energy maps related with the likelihood of polyp presence. We perform a double validation of our maps, which include the introduction of two new databases, including the first, up to our knowledge, fully annotated database with clinical metadata associated. First we assess that the highest value corresponds with the location of the polyp in the image. Second, we show that WM-DOVA energy maps can be comparable with saliency maps obtained from physicians' fixations obtained via an eye-tracker. Finally, we prove that our method outperforms state-of-the-art computational saliency results. Our method shows good performance, particularly for small polyps which are reported to be the main sources of polyp miss-rate, which indicates the potential applicability of our method in clinical practice. |
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0895-6111 |
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MV; IAM; 600.047; 600.060; 600.075;SIAI |
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Admin @ si @ BSF2015 |
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2609 |
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Jorge Bernal; Aymeric Histace; Marc Masana; Quentin Angermann; Cristina Sanchez Montes; Cristina Rodriguez de Miguel; Maroua Hammami; Ana Garcia Rodriguez; Henry Cordova; Olivier Romain; Gloria Fernandez Esparrach; Xavier Dray; F. Javier Sanchez |
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Title |
GTCreator: a flexible annotation tool for image-based datasets |
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Journal Article |
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2019 |
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International Journal of Computer Assisted Radiology and Surgery |
Abbreviated Journal |
IJCAR |
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14 |
Issue |
2 |
Pages |
191–201 |
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Annotation tool; Validation Framework; Benchmark; Colonoscopy; Evaluation |
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Abstract Purpose: Methodology evaluation for decision support systems for health is a time consuming-task. To assess performance of polyp detection
methods in colonoscopy videos, clinicians have to deal with the annotation
of thousands of images. Current existing tools could be improved in terms of
exibility and ease of use. Methods:We introduce GTCreator, a exible annotation tool for providing image and text annotations to image-based datasets.
It keeps the main basic functionalities of other similar tools while extending
other capabilities such as allowing multiple annotators to work simultaneously
on the same task or enhanced dataset browsing and easy annotation transfer aiming to speed up annotation processes in large datasets. Results: The
comparison with other similar tools shows that GTCreator allows to obtain
fast and precise annotation of image datasets, being the only one which offers
full annotation editing and browsing capabilites. Conclusions: Our proposed
annotation tool has been proven to be efficient for large image dataset annota-
tion, as well as showing potential of use in other stages of method evaluation
such as experimental setup or results analysis. |
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MV; 600.096; 600.109; 600.119; 601.305 |
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Admin @ si @ BHM2019 |
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3163 |
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Author |
Jorge Bernal |
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Title |
Polyp Localization and Segmentation in Colonoscopy Images by Means of a Model of Appearance for Polyps |
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Journal Article |
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Year |
2014 |
Publication |
Electronic Letters on Computer Vision and Image Analysis |
Abbreviated Journal |
ELCVIA |
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13 |
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2 |
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9-10 |
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Colonoscopy; polyp localization; polyp segmentation; Eye-tracking |
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Colorectal cancer is the fourth most common cause of cancer death worldwide and its survival rate depends on the stage in which it is detected on hence the necessity for an early colon screening. There are several screening techniques but colonoscopy is still nowadays the gold standard, although it has some drawbacks such as the miss rate. Our contribution, in the field of intelligent systems for colonoscopy, aims at providing a polyp localization and a polyp segmentation system based on a model of appearance for polyps. To develop both methods we define a model of appearance for polyps, which describes a polyp as enclosed by intensity valleys. The novelty of our contribution resides on the fact that we include in our model aspects of the image formation and we also consider the presence of other elements from the endoluminal scene such as specular highlights and blood vessels, which have an impact on the performance of our methods. In order to develop our polyp localization method we accumulate valley information in order to generate energy maps, which are also used to guide the polyp segmentation. Our methods achieve promising results in polyp localization and segmentation. As we want to explore the usability of our methods we present a comparative analysis between physicians fixations obtained via an eye tracking device and our polyp localization method. The results show that our method is indistinguishable to novice physicians although it is far from expert physicians. |
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Alicia Fornes; Volkmar Frinken |
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MV |
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Admin @ si @ Ber2014 |
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2487 |
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Author |
Miguel Angel Bautista; Sergio Escalera; Xavier Baro; Petia Radeva; Jordi Vitria; Oriol Pujol |
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Title |
Minimal Design of Error-Correcting Output Codes |
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Journal Article |
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2011 |
Publication |
Pattern Recognition Letters |
Abbreviated Journal |
PRL |
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33 |
Issue |
6 |
Pages |
693-702 |
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Multi-class classification; Error-correcting output codes; Ensemble of classifiers |
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IF JCR CCIA 1.303 2009 54/103
The classification of large number of object categories is a challenging trend in the pattern recognition field. In literature, this is often addressed using an ensemble of classifiers. In this scope, the Error-correcting output codes framework has demonstrated to be a powerful tool for combining classifiers. However, most state-of-the-art ECOC approaches use a linear or exponential number of classifiers, making the discrimination of a large number of classes unfeasible. In this paper, we explore and propose a minimal design of ECOC in terms of the number of classifiers. Evolutionary computation is used for tuning the parameters of the classifiers and looking for the best minimal ECOC code configuration. The results over several public UCI datasets and different multi-class computer vision problems show that the proposed methodology obtains comparable (even better) results than state-of-the-art ECOC methodologies with far less number of dichotomizers. |
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Elsevier |
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0167-8655 |
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MILAB; OR;HuPBA;MV |
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no |
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Call Number |
Admin @ si @ BEB2011a |
Serial |
1800 |
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Author |
Sergio Escalera; Jordi Gonzalez; Xavier Baro; Jamie Shotton |
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Title |
Guest Editor Introduction to the Special Issue on Multimodal Human Pose Recovery and Behavior Analysis |
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Journal Article |
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2016 |
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IEEE Transactions on Pattern Analysis and Machine Intelligence |
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TPAMI |
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28 |
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1489 - 1491 |
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The sixteen papers in this special section focus on human pose recovery and behavior analysis (HuPBA). This is one of the most challenging topics in computer vision, pattern analysis, and machine learning. It is of critical importance for application areas that include gaming, computer interaction, human robot interaction, security, commerce, assistive technologies and rehabilitation, sports, sign language recognition, and driver assistance technology, to mention just a few. In essence, HuPBA requires dealing with the articulated nature of the human body, changes in appearance due to clothing, and the inherent problems of clutter scenes, such as background artifacts, occlusions, and illumination changes. These papers represent the most recent research in this field, including new methods considering still images, image sequences, depth data, stereo vision, 3D vision, audio, and IMUs, among others. |
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HuPBA; ISE;MV; |
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Admin @ si @ |
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2851 |
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