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Frederic Sampedro; Sergio Escalera; Anna Domenech; Ignasi Carrio |
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Title |
Automatic Tumor Volume Segmentation in Whole-Body PET/CT Scans: A Supervised Learning Approach Source |
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Journal Article |
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2015 |
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Journal of Medical Imaging and Health Informatics |
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JMIHI |
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5 |
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2 |
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192-201 |
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CONTEXTUAL CLASSIFICATION; PET/CT; SUPERVISED LEARNING; TUMOR SEGMENTATION; WHOLE BODY |
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Whole-body 3D PET/CT tumoral volume segmentation provides relevant diagnostic and prognostic information in clinical oncology and nuclear medicine. Carrying out this procedure manually by a medical expert is time consuming and suffers from inter- and intra-observer variabilities. In this paper, a completely automatic approach to this task is presented. First, the problem is stated and described both in clinical and technological terms. Then, a novel supervised learning segmentation framework is introduced. The segmentation by learning approach is defined within a Cascade of Adaboost classifiers and a 3D contextual proposal of Multiscale Stacked Sequential Learning. Segmentation accuracy results on 200 Breast Cancer whole body PET/CT volumes show mean 49% sensitivity, 99.993% specificity and 39% Jaccard overlap Index, which represent good performance results both at the clinical and technological level. |
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HuPBA;MILAB |
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no |
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Admin @ si @ SED2015 |
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2584 |
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Author |
Frederic Sampedro; Sergio Escalera; Anna Puig |
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Title |
Iterative Multiclass Multiscale Stacked Sequential Learning: definition and application to medical volume segmentation |
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Journal Article |
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Year |
2014 |
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Pattern Recognition Letters |
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PRL |
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46 |
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1-10 |
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Machine learning; Sequential learning; Multi-class problems; Contextual learning; Medical volume segmentation |
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In this work we present the iterative multi-class multi-scale stacked sequential learning framework (IMMSSL), a novel learning scheme that is particularly suited for medical volume segmentation applications. This model exploits the inherent voxel contextual information of the structures of interest in order to improve its segmentation performance results. Without any feature set or learning algorithm prior assumption, the proposed scheme directly seeks to learn the contextual properties of a region from the predicted classifications of previous classifiers within an iterative scheme. Performance results regarding segmentation accuracy in three two-class and multi-class medical volume datasets show a significant improvement with respect to state of the art alternatives. Due to its easiness of implementation and its independence of feature space and learning algorithm, the presented machine learning framework could be taken into consideration as a first choice in complex volume segmentation scenarios. |
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HuPBA;MILAB |
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no |
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Admin @ si @ SEP2014 |
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2550 |
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I. Sorodoc; S. Pezzelle; A. Herbelot; Mariella Dimiccoli; R. Bernardi |
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Title |
Learning quantification from images: A structured neural architecture |
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2018 |
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Natural Language Engineering |
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NLE |
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24 |
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3 |
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363-392 |
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Major advances have recently been made in merging language and vision representations. Most tasks considered so far have confined themselves to the processing of objects and lexicalised relations amongst objects (content words). We know, however, that humans (even pre-school children) can abstract over raw multimodal data to perform certain types of higher level reasoning, expressed in natural language by function words. A case in point is given by their ability to learn quantifiers, i.e. expressions like few, some and all. From formal semantics and cognitive linguistics, we know that quantifiers are relations over sets which, as a simplification, we can see as proportions. For instance, in most fish are red, most encodes the proportion of fish which are red fish. In this paper, we study how well current neural network strategies model such relations. We propose a task where, given an image and a query expressed by an object–property pair, the system must return a quantifier expressing which proportions of the queried object have the queried property. Our contributions are twofold. First, we show that the best performance on this task involves coupling state-of-the-art attention mechanisms with a network architecture mirroring the logical structure assigned to quantifiers by classic linguistic formalisation. Second, we introduce a new balanced dataset of image scenarios associated with quantification queries, which we hope will foster further research in this area. |
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MILAB; no menciona |
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no |
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Admin @ si @ SPH2018 |
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3021 |
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Author |
Md.Mostafa Kamal Sarker; Hatem A. Rashwan; Farhan Akram; Estefania Talavera; Syeda Furruka Banu; Petia Radeva; Domenec Puig |
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Title |
Recognizing Food Places in Egocentric Photo-Streams Using Multi-Scale Atrous Convolutional Networks and Self-Attention Mechanism |
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2019 |
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IEEE Access |
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ACCESS |
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7 |
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39069-39082 |
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Wearable sensors (e.g., lifelogging cameras) represent very useful tools to monitor people's daily habits and lifestyle. Wearable cameras are able to continuously capture different moments of the day of their wearers, their environment, and interactions with objects, people, and places reflecting their personal lifestyle. The food places where people eat, drink, and buy food, such as restaurants, bars, and supermarkets, can directly affect their daily dietary intake and behavior. Consequently, developing an automated monitoring system based on analyzing a person's food habits from daily recorded egocentric photo-streams of the food places can provide valuable means for people to improve their eating habits. This can be done by generating a detailed report of the time spent in specific food places by classifying the captured food place images to different groups. In this paper, we propose a self-attention mechanism with multi-scale atrous convolutional networks to generate discriminative features from image streams to recognize a predetermined set of food place categories. We apply our model on an egocentric food place dataset called “EgoFoodPlaces” that comprises of 43 392 images captured by 16 individuals using a lifelogging camera. The proposed model achieved an overall classification accuracy of 80% on the “EgoFoodPlaces” dataset, respectively, outperforming the baseline methods, such as VGG16, ResNet50, and InceptionV3. |
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MILAB; no menciona |
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no |
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Admin @ si @ SRA2019 |
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3296 |
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Author |
Md Mostafa Kamal Sarker; Hatem A. Rashwan; Farhan Akram; Vivek Kumar Singh; Syeda Furruka Banu; Forhad U H Chowdhury; Kabir Ahmed Choudhury; Sylvie Chambon; Petia Radeva; Domenec Puig; Mohamed Abdel-Nasser |
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Title |
SLSNet: Skin lesion segmentation using a lightweight generative adversarial network |
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Journal Article |
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Year |
2021 |
Publication |
Expert Systems With Applications |
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ESWA |
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183 |
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115433 |
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The determination of precise skin lesion boundaries in dermoscopic images using automated methods faces many challenges, most importantly, the presence of hair, inconspicuous lesion edges and low contrast in dermoscopic images, and variability in the color, texture and shapes of skin lesions. Existing deep learning-based skin lesion segmentation algorithms are expensive in terms of computational time and memory. Consequently, running such segmentation algorithms requires a powerful GPU and high bandwidth memory, which are not available in dermoscopy devices. Thus, this article aims to achieve precise skin lesion segmentation with minimum resources: a lightweight, efficient generative adversarial network (GAN) model called SLSNet, which combines 1-D kernel factorized networks, position and channel attention, and multiscale aggregation mechanisms with a GAN model. The 1-D kernel factorized network reduces the computational cost of 2D filtering. The position and channel attention modules enhance the discriminative ability between the lesion and non-lesion feature representations in spatial and channel dimensions, respectively. A multiscale block is also used to aggregate the coarse-to-fine features of input skin images and reduce the effect of the artifacts. SLSNet is evaluated on two publicly available datasets: ISBI 2017 and the ISIC 2018. Although SLSNet has only 2.35 million parameters, the experimental results demonstrate that it achieves segmentation results on a par with the state-of-the-art skin lesion segmentation methods with an accuracy of 97.61%, and Dice and Jaccard similarity coefficients of 90.63% and 81.98%, respectively. SLSNet can run at more than 110 frames per second (FPS) in a single GTX1080Ti GPU, which is faster than well-known deep learning-based image segmentation models, such as FCN. Therefore, SLSNet can be used for practical dermoscopic applications. |
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MILAB; no proj |
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no |
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Admin @ si @ SRA2021 |
Serial |
3633 |
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