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Reuben Dorent; Aaron Kujawa; Marina Ivory; Spyridon Bakas; Nikola Rieke; Samuel Joutard; Ben Glocker; Jorge Cardoso; Marc Modat; Kayhan Batmanghelich; Arseniy Belkov; Maria Baldeon Calisto; Jae Won Choi; Benoit M. Dawant; Hexin Dong; Sergio Escalera; Yubo Fan; Lasse Hansen; Mattias P. Heinrich; Smriti Joshi; Victoriya Kashtanova; Hyeon Gyu Kim; Satoshi Kondo; Christian N. Kruse; Susana K. Lai-Yuen; Hao Li; Han Liu; Buntheng Ly; Ipek Oguz; Hyungseob Shin; Boris Shirokikh; Zixian Su; Guotai Wang; Jianghao Wu; Yanwu Xu; Kai Yao; Li Zhang; Sebastien Ourselin, |
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CrossMoDA 2021 challenge: Benchmark of Cross-Modality Domain Adaptation techniques for Vestibular Schwannoma and Cochlea Segmentation |
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2023 |
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Medical Image Analysis |
Abbreviated Journal |
MIA |
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83 |
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102628 |
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Domain Adaptation; Segmen tation; Vestibular Schwnannoma |
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Domain Adaptation (DA) has recently raised strong interests in the medical imaging community. While a large variety of DA techniques has been proposed for image segmentation, most of these techniques have been validated either on private datasets or on small publicly available datasets. Moreover, these datasets mostly addressed single-class problems. To tackle these limitations, the Cross-Modality Domain Adaptation (crossMoDA) challenge was organised in conjunction with the 24th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2021). CrossMoDA is the first large and multi-class benchmark for unsupervised cross-modality DA. The challenge's goal is to segment two key brain structures involved in the follow-up and treatment planning of vestibular schwannoma (VS): the VS and the cochleas. Currently, the diagnosis and surveillance in patients with VS are performed using contrast-enhanced T1 (ceT1) MRI. However, there is growing interest in using non-contrast sequences such as high-resolution T2 (hrT2) MRI. Therefore, we created an unsupervised cross-modality segmentation benchmark. The training set provides annotated ceT1 (N=105) and unpaired non-annotated hrT2 (N=105). The aim was to automatically perform unilateral VS and bilateral cochlea segmentation on hrT2 as provided in the testing set (N=137). A total of 16 teams submitted their algorithm for the evaluation phase. The level of performance reached by the top-performing teams is strikingly high (best median Dice – VS:88.4%; Cochleas:85.7%) and close to full supervision (median Dice – VS:92.5%; Cochleas:87.7%). All top-performing methods made use of an image-to-image translation approach to transform the source-domain images into pseudo-target-domain images. A segmentation network was then trained using these generated images and the manual annotations provided for the source image. |
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Admin @ si @ DKI2023 |
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3706 |
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Swathikiran Sudhakaran; Sergio Escalera; Oswald Lanz |
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Gate-Shift-Fuse for Video Action Recognition |
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Journal Article |
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2023 |
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IEEE Transactions on Pattern Analysis and Machine Intelligence |
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TPAMI |
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45 |
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9 |
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10913-10928 |
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Action Recognition; Video Classification; Spatial Gating; Channel Fusion |
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Convolutional Neural Networks are the de facto models for image recognition. However 3D CNNs, the straight forward extension of 2D CNNs for video recognition, have not achieved the same success on standard action recognition benchmarks. One of the main reasons for this reduced performance of 3D CNNs is the increased computational complexity requiring large scale annotated datasets to train them in scale. 3D kernel factorization approaches have been proposed to reduce the complexity of 3D CNNs. Existing kernel factorization approaches follow hand-designed and hard-wired techniques. In this paper we propose Gate-Shift-Fuse (GSF), a novel spatio-temporal feature extraction module which controls interactions in spatio-temporal decomposition and learns to adaptively route features through time and combine them in a data dependent manner. GSF leverages grouped spatial gating to decompose input tensor and channel weighting to fuse the decomposed tensors. GSF can be inserted into existing 2D CNNs to convert them into an efficient and high performing spatio-temporal feature extractor, with negligible parameter and compute overhead. We perform an extensive analysis of GSF using two popular 2D CNN families and achieve state-of-the-art or competitive performance on five standard action recognition benchmarks. |
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1 Sept. 2023 |
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HUPBA; no menciona |
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no |
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Admin @ si @ SEL2023 |
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3814 |
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Javier Selva; Anders S. Johansen; Sergio Escalera; Kamal Nasrollahi; Thomas B. Moeslund; Albert Clapes |
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Video transformers: A survey |
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2023 |
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IEEE Transactions on Pattern Analysis and Machine Intelligence |
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TPAMI |
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45 |
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11 |
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12922-12943 |
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Artificial Intelligence; Computer Vision; Self-Attention; Transformers; Video Representations |
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Transformer models have shown great success handling long-range interactions, making them a promising tool for modeling video. However, they lack inductive biases and scale quadratically with input length. These limitations are further exacerbated when dealing with the high dimensionality introduced by the temporal dimension. While there are surveys analyzing the advances of Transformers for vision, none focus on an in-depth analysis of video-specific designs. In this survey, we analyze the main contributions and trends of works leveraging Transformers to model video. Specifically, we delve into how videos are handled at the input level first. Then, we study the architectural changes made to deal with video more efficiently, reduce redundancy, re-introduce useful inductive biases, and capture long-term temporal dynamics. In addition, we provide an overview of different training regimes and explore effective self-supervised learning strategies for video. Finally, we conduct a performance comparison on the most common benchmark for Video Transformers (i.e., action classification), finding them to outperform 3D ConvNets even with less computational complexity. |
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1 Nov. 2023 |
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HUPBA; no menciona |
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no |
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Admin @ si @ SJE2023 |
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3823 |
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Lei Li; Fuping Wu; Sihan Wang; Xinzhe Luo; Carlos Martin Isla; Shuwei Zhai; Jianpeng Zhang; Yanfei Liu; Zhen Zhang; Markus J. Ankenbrand; Haochuan Jiang; Xiaoran Zhang; Linhong Wang; Tewodros Weldebirhan Arega; Elif Altunok; Zhou Zhao; Feiyan Li; Jun Ma; Xiaoping Yang; Elodie Puybareau; Ilkay Oksuz; Stephanie Bricq; Weisheng Li;Kumaradevan Punithakumar; Sotirios A. Tsaftaris; Laura M. Schreiber; Mingjing Yang; Guocai Liu; Yong Xia; Guotai Wang; Sergio Escalera; Xiahai Zhuag |
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MyoPS: A benchmark of myocardial pathology segmentation combining three-sequence cardiac magnetic resonance images |
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Journal Article |
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2023 |
Publication |
Medical Image Analysis |
Abbreviated Journal |
MIA |
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87 |
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102808 |
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Assessment of myocardial viability is essential in diagnosis and treatment management of patients suffering from myocardial infarction, and classification of pathology on the myocardium is the key to this assessment. This work defines a new task of medical image analysis, i.e., to perform myocardial pathology segmentation (MyoPS) combining three-sequence cardiac magnetic resonance (CMR) images, which was first proposed in the MyoPS challenge, in conjunction with MICCAI 2020. Note that MyoPS refers to both myocardial pathology segmentation and the challenge in this paper. The challenge provided 45 paired and pre-aligned CMR images, allowing algorithms to combine the complementary information from the three CMR sequences for pathology segmentation. In this article, we provide details of the challenge, survey the works from fifteen participants and interpret their methods according to five aspects, i.e., preprocessing, data augmentation, learning strategy, model architecture and post-processing. In addition, we analyze the results with respect to different factors, in order to examine the key obstacles and explore the potential of solutions, as well as to provide a benchmark for future research. The average Dice scores of submitted algorithms were and for myocardial scars and edema, respectively. We conclude that while promising results have been reported, the research is still in the early stage, and more in-depth exploration is needed before a successful application to the clinics. MyoPS data and evaluation tool continue to be publicly available upon registration via its homepage (www.sdspeople.fudan.edu.cn/zhuangxiahai/0/myops20/). |
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Admin @ si @ LWW2023a |
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3878 |
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Razieh Rastgoo; Kourosh Kiani; Sergio Escalera |
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ZS-GR: zero-shot gesture recognition from RGB-D videos |
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Journal Article |
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2023 |
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Multimedia Tools and Applications |
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MTAP |
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82 |
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43781-43796 |
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Gesture Recognition (GR) is a challenging research area in computer vision. To tackle the annotation bottleneck in GR, we formulate the problem of Zero-Shot Gesture Recognition (ZS-GR) and propose a two-stream model from two input modalities: RGB and Depth videos. To benefit from the vision Transformer capabilities, we use two vision Transformer models, for human detection and visual features representation. We configure a transformer encoder-decoder architecture, as a fast and accurate human detection model, to overcome the challenges of the current human detection models. Considering the human keypoints, the detected human body is segmented into nine parts. A spatio-temporal representation from human body is obtained using a vision Transformer and a LSTM network. A semantic space maps the visual features to the lingual embedding of the class labels via a Bidirectional Encoder Representations from Transformers (BERT) model. We evaluated the proposed model on five datasets, Montalbano II, MSR Daily Activity 3D, CAD-60, NTU-60, and isoGD obtaining state-of-the-art results compared to state-of-the-art ZS-GR models as well as the Zero-Shot Action Recognition (ZS-AR). |
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Admin @ si @ RKE2023a |
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3879 |
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