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Author Esmitt Ramirez; Carles Sanchez; Agnes Borras; Marta Diez Ferrer; Antoni Rosell; Debora Gil edit   pdf
url  openurl
  Title Image-Based Bronchial Anatomy Codification for Biopsy Guiding in Video Bronchoscopy Type Conference Article
  Year (down) 2018 Publication OR 2.0 Context-Aware Operating Theaters, Computer Assisted Robotic Endoscopy, Clinical Image-Based Procedures, and Skin Image Analysis Abbreviated Journal  
  Volume 11041 Issue Pages  
  Keywords Biopsy guiding; Bronchoscopy; Lung biopsy; Intervention guiding; Airway codification  
  Abstract Bronchoscopy examinations allow biopsy of pulmonary nodules with minimum risk for the patient. Even for experienced bronchoscopists, it is difficult to guide the bronchoscope to most distal lesions and obtain an accurate diagnosis. This paper presents an image-based codification of the bronchial anatomy for bronchoscopy biopsy guiding. The 3D anatomy of each patient is codified as a binary tree with nodes representing bronchial levels and edges labeled using their position on images projecting the 3D anatomy from a set of branching points. The paths from the root to leaves provide a codification of navigation routes with spatially consistent labels according to the anatomy observes in video bronchoscopy explorations. We evaluate our labeling approach as a guiding system in terms of the number of bronchial levels correctly codified, also in the number of labels-based instructions correctly supplied, using generalized mixed models and computer-generated data. Results obtained for three independent observers prove the consistency and reproducibility of our guiding system. We trust that our codification based on viewer’s projection might be used as a foundation for the navigation process in Virtual Bronchoscopy systems.  
  Address Granada; September 2018  
  Corporate Author Thesis  
  Publisher Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title LNCS  
  Series Volume Series Issue Edition  
  ISSN ISBN Medium  
  Area Expedition Conference MICCAIW  
  Notes IAM; 600.096; 600.075; 601.323; 600.145 Approved no  
  Call Number Admin @ si @ RSB2018b Serial 3137  
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Author Carles Sanchez; Antonio Esteban Lansaque; Agnes Borras; Marta Diez-Ferrer; Antoni Rosell; Debora Gil edit   pdf
openurl 
  Title Towards a Videobronchoscopy Localization System from Airway Centre Tracking Type Conference Article
  Year (down) 2017 Publication 12th International Conference on Computer Vision Theory and Applications Abbreviated Journal  
  Volume Issue Pages 352-359  
  Keywords Video-bronchoscopy; Lung cancer diagnosis; Airway lumen detection; Region tracking; Guided bronchoscopy navigation  
  Abstract Bronchoscopists use fluoroscopy to guide flexible bronchoscopy to the lesion to be biopsied without any kind of incision. Being fluoroscopy an imaging technique based on X-rays, the risk of developmental problems and cancer is increased in those subjects exposed to its application, so minimizing radiation is crucial. Alternative guiding systems such as electromagnetic navigation require specific equipment, increase the cost of the clinical procedure and still require fluoroscopy. In this paper we propose an image based guiding system based on the extraction of airway centres from intra-operative videos. Such anatomical landmarks are matched to the airway centreline extracted from a pre-planned CT to indicate the best path to the nodule. We present a
feasibility study of our navigation system using simulated bronchoscopic videos and a multi-expert validation of landmarks extraction in 3 intra-operative ultrathin explorations.
 
  Address Porto; Portugal; February 2017  
  Corporate Author Thesis  
  Publisher Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN ISBN Medium  
  Area Expedition Conference VISAPP  
  Notes IAM; 600.096; 600.075; 600.145 Approved no  
  Call Number Admin @ si @ SEB2017 Serial 2943  
Permanent link to this record
 

 
Author Debora Gil; Aura Hernandez-Sabate; David Castells; Jordi Carrabina edit   pdf
openurl 
  Title CYBERH: Cyber-Physical Systems in Health for Personalized Assistance Type Conference Article
  Year (down) 2017 Publication International Symposium on Symbolic and Numeric Algorithms for Scientific Computing Abbreviated Journal  
  Volume Issue Pages  
  Keywords  
  Abstract Assistance systems for e-Health applications have some specific requirements that demand of new methods for data gathering, analysis and modeling able to deal with SmallData:
1) systems should dynamically collect data from, both, the environment and the user to issue personalized recommendations; 2) data analysis should be able to tackle a limited number of samples prone to include non-informative data and possibly evolving in time due to changes in patient condition; 3) algorithms should run in real time with possibly limited computational resources and fluctuant internet access.
Electronic medical devices (and CyberPhysical devices in general) can enhance the process of data gathering and analysis in several ways: (i) acquiring simultaneously multiple sensors data instead of single magnitudes (ii) filtering data; (iii) providing real-time implementations condition by isolating tasks in individual processors of multiprocessors Systems-on-chip (MPSoC) platforms and (iv) combining information through sensor fusion
techniques.
Our approach focus on both aspects of the complementary role of CyberPhysical devices and analysis of SmallData in the process of personalized models building for e-Health applications. In particular, we will address the design of Cyber-Physical Systems in Health for Personalized Assistance (CyberHealth) in two specific application cases: 1) A Smart Assisted Driving System (SADs) for dynamical assessment of the driving capabilities of Mild Cognitive Impaired (MCI) people; 2) An Intelligent Operating Room (iOR) for improving the yield of bronchoscopic interventions for in-vivo lung cancer diagnosis.
 
  Address Timisoara; Rumania; September 2017  
  Corporate Author Thesis  
  Publisher Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN ISBN Medium  
  Area Expedition Conference SYNASC  
  Notes IAM; 600.085; 600.096; 600.075; 600.145 Approved no  
  Call Number Admin @ si @ GHC2017 Serial 3045  
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Author Debora Gil; Oriol Ramos Terrades; Elisa Minchole; Carles Sanchez; Noelia Cubero de Frutos; Marta Diez-Ferrer; Rosa Maria Ortiz; Antoni Rosell edit  url
openurl 
  Title Classification of Confocal Endomicroscopy Patterns for Diagnosis of Lung Cancer Type Conference Article
  Year (down) 2017 Publication 6th Workshop on Clinical Image-based Procedures: Translational Research in Medical Imaging Abbreviated Journal  
  Volume 10550 Issue Pages 151-159  
  Keywords  
  Abstract Confocal Laser Endomicroscopy (CLE) is an emerging imaging technique that allows the in-vivo acquisition of cell patterns of potentially malignant lesions. Such patterns could discriminate between inflammatory and neoplastic lesions and, thus, serve as a first in-vivo biopsy to discard cases that do not actually require a cell biopsy.

The goal of this work is to explore whether CLE images obtained during videobronchoscopy contain enough visual information to discriminate between benign and malign peripheral lesions for lung cancer diagnosis. To do so, we have performed a pilot comparative study with 12 patients (6 adenocarcinoma and 6 benign-inflammatory) using 2 different methods for CLE pattern analysis: visual analysis by 3 experts and a novel methodology that uses graph methods to find patterns in pre-trained feature spaces. Our preliminary results indicate that although visual analysis can only achieve a 60.2% of accuracy, the accuracy of the proposed unsupervised image pattern classification raises to 84.6%.

We conclude that CLE images visual information allow in-vivo detection of neoplastic lesions and graph structural analysis applied to deep-learning feature spaces can achieve competitive results.
 
  Address Quebec; Canada; September 2017  
  Corporate Author Thesis  
  Publisher Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title LNCS  
  Series Volume Series Issue Edition  
  ISSN ISBN Medium  
  Area Expedition Conference CLIP  
  Notes IAM; 600.096; 600.075; 600.145 Approved no  
  Call Number Admin @ si @ GRM2017 Serial 2957  
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Author Mireia Sole; J. Blanco; Debora Gil; Oliver Valero; Gothami Fonseka; M. Lawrie; Francesca Vidal; Zaida Sarrate edit   pdf
openurl 
  Title Chromosome Territories in Mice Spermatogenesis: A new three-dimensional methodology of study Type Conference Article
  Year (down) 2017 Publication 11th European CytoGenesis Conference Abbreviated Journal  
  Volume Issue Pages  
  Keywords  
  Abstract  
  Address Florencia; Italia; July 2017  
  Corporate Author Thesis  
  Publisher Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN ISBN Medium  
  Area Expedition Conference ECA  
  Notes IAM; 600.096; 600.145 Approved no  
  Call Number Admin @ si @ SBG2017a Serial 2936  
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Author Mireia Sole; Joan Blanco; Debora Gil; Gothami Fonseka; Richard Frodsham; Oliver Valero; Francesca Vidal; Zaida Sarrate edit   pdf
openurl 
  Title Is there a pattern of Chromosome territoriality along mice spermatogenesis? Type Conference Article
  Year (down) 2017 Publication 3rd Spanish MeioNet Meeting Abstract Book Abbreviated Journal  
  Volume Issue Pages 55-56  
  Keywords  
  Abstract  
  Address Miraflores de la Sierra; Madrid; June 2017  
  Corporate Author Thesis  
  Publisher Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN ISBN Medium  
  Area Expedition Conference MEIONET  
  Notes IAM; 600.096; 600.145 Approved no  
  Call Number Admin @ si @ Serial 2958  
Permanent link to this record
 

 
Author Mireia Sole; Joan Blanco; Debora Gil; Gothami Fonseka; Richard Frodsham; Oliver Valero; Francesca Vidal; Zaida Sarrate edit  openurl
  Title Unraveling the enigmas of chromosome territoriality during spermatogenesis Type Conference Article
  Year (down) 2017 Publication IX Jornada del Departament de Biologia Cel•lular, Fisiologia i Immunologia Abbreviated Journal  
  Volume Issue Pages  
  Keywords  
  Abstract  
  Address UAB; Barcelona; June 2017  
  Corporate Author Thesis  
  Publisher Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN ISBN Medium  
  Area Expedition Conference  
  Notes IAM; 600.145 Approved no  
  Call Number Admin @ si @ SBG2017b Serial 2959  
Permanent link to this record
 

 
Author Rosa Maria Ortiz; Debora Gil; Elisa Minchole; Marta Diez-Ferrer; Noelia Cubero de Frutos edit  openurl
  Title Classification of Confolcal Endomicroscopy Patterns for Diagnosis of Lung Cancer Type Conference Article
  Year (down) 2017 Publication 18th World Conference on Lung Cancer Abbreviated Journal  
  Volume Issue Pages  
  Keywords  
  Abstract Confocal Laser Endomicroscopy (CLE) is an emerging imaging technique that allows the in-vivo acquisition of cell patterns of potentially malignant lesions. Such patterns could discriminate between inflammatory and neoplastic lesions and, thus, serve as a first in-vivo biopsy to discard cases that do not actually require a cell biopsy.

The goal of this work is to explore whether CLE images obtained during videobronchoscopy contain enough visual information to discriminate between benign and malign peripheral lesions for lung cancer diagnosis. To do so, we have performed a pilot comparative study with 12 patients (6 adenocarcinoma and 6 benign-inflammatory) using 2 different methods for CLE pattern analysis: visual analysis by 3 experts and a novel methodology that uses graph methods to find patterns in pre-trained feature spaces. Our preliminary results indicate that although visual analysis can only achieve a 60.2% of accuracy, the accuracy of the proposed unsupervised image pattern classification raises to 84.6%.

We conclude that CLE images visual information allow in-vivo detection of neoplastic lesions and graph structural analysis applied to deep-learning feature spaces can achieve competitive results.
 
  Address Yokohama; Japan; October 2017  
  Corporate Author Thesis  
  Publisher Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN ISBN Medium  
  Area Expedition Conference IASLC WCLC  
  Notes IAM; 600.096; 600.075; 600.145 Approved no  
  Call Number Admin @ si @ OGM2017 Serial 3044  
Permanent link to this record
 

 
Author Antoni Gurgui; Debora Gil; Enric Marti; Vicente Grau edit  doi
openurl 
  Title Left-Ventricle Basal Region Constrained Parametric Mapping to Unitary Domain Type Conference Article
  Year (down) 2016 Publication 7th International Workshop on Statistical Atlases & Computational Modelling of the Heart Abbreviated Journal  
  Volume 10124 Issue Pages 163-171  
  Keywords Laplacian; Constrained maps; Parameterization; Basal ring  
  Abstract Due to its complex geometry, the basal ring is often omitted when putting different heart geometries into correspondence. In this paper, we present the first results on a new mapping of the left ventricle basal rings onto a normalized coordinate system using a fold-over free approach to the solution to the Laplacian. To guarantee correspondences between different basal rings, we imposed some internal constrained positions at anatomical landmarks in the normalized coordinate system. To prevent internal fold-overs, constraints are handled by cutting the volume into regions defined by anatomical features and mapping each piece of the volume separately. Initial results presented in this paper indicate that our method is able to handle internal constrains without introducing fold-overs and thus guarantees one-to-one mappings between different basal ring geometries.  
  Address Athens; October 2016  
  Corporate Author Thesis  
  Publisher Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title LNCS  
  Series Volume Series Issue Edition  
  ISSN ISBN Medium  
  Area Expedition Conference STACOM  
  Notes IAM; Approved no  
  Call Number Admin @ si @ GGM2016 Serial 2884  
Permanent link to this record
 

 
Author Antonio Esteban Lansaque; Carles Sanchez; Agnes Borras; M. Diez-Ferrer; A. Rosell; Debora Gil edit   pdf
openurl 
  Title Stable Airway Center Tracking for Bronchoscopic Navigation Type Conference Article
  Year (down) 2016 Publication 28th Conference of the international Society for Medical Innovation and Technology Abbreviated Journal  
  Volume Issue Pages  
  Keywords  
  Abstract Bronchoscopists use X‐ray fluoroscopy to guide bronchoscopes to the lesion to be biopsied without any kind of incisions. Reducing exposure to X‐ray is important for both patients and doctors but alternatives like electromagnetic navigation require specific equipment and increase the cost of the clinical procedure. We propose a guiding system based on the extraction of airway centers from intra‐operative videos. Such anatomical landmarks could be
matched to the airway centerline extracted from a pre‐planned CT to indicate the best path to the lesion. We present an extraction of lumen centers
from intra‐operative videos based on tracking of maximal stable regions of energy maps.
 
  Address Delft; Rotterdam; Leiden; The Netherlands; October 2016  
  Corporate Author Thesis  
  Publisher Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN ISBN Medium  
  Area Expedition Conference SMIT  
  Notes IAM; Approved no  
  Call Number Admin @ si @ LSB2016a Serial 2856  
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