| |
Records |
Links |
|
Author |
Debora Gil; Agnes Borras; Manuel Ballester; Francesc Carreras; Ruth Aris; Manuel Vazquez; Enric Marti; Ferran Poveda |
|
| |
Title |
MIOCARDIA: Integrating cardiac function and muscular architecture for a better diagnosis |
Type |
Conference Article |
| |
Year  |
2011 |
Publication |
14th International Symposium on Applied Sciences in Biomedical and Communication Technologies |
Abbreviated Journal |
|
|
| |
Volume |
|
Issue |
|
Pages |
|
|
| |
Keywords |
|
|
| |
Abstract |
Deep understanding of myocardial structure of the heart would unravel crucial knowledge for clinical and medical procedures. The MIOCARDIA project is a multidisciplinary project in cooperation with l'Hospital de la Santa Creu i de Sant Pau, Clinica la Creu Blanca and Barcelona Supercomputing Center. The ultimate goal of this project is defining a computational model of the myocardium. The model takes into account the deep interrelation between the anatomy and the mechanics of the heart. The paper explains the workflow of the MIOCARDIA project. It also introduces a multiresolution reconstruction technique based on DT-MRI streamlining for simplified global myocardial model generation. Our reconstructions can restore the most complex myocardial structures and provides evidences of a global helical organization. |
|
| |
Address |
Barcelona; Spain |
|
| |
Corporate Author |
Association for Computing Machinery |
Thesis |
|
|
| |
Publisher |
|
Place of Publication |
Barcelona, Spain |
Editor |
Association for Computing Machinery |
|
| |
Language |
english |
Summary Language |
english |
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
|
ISBN |
978-1-4503-0913-4 |
Medium |
|
|
| |
Area |
|
Expedition |
|
Conference |
ISABEL |
|
| |
Notes |
IAM |
Approved |
no |
|
| |
Call Number |
IAM @ iam @ GGB2011 |
Serial |
1691 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
Joan M. Nuñez |
|
| |
Title |
Computer vision techniques for characterization of finger joints in X-ray image |
Type |
Report |
| |
Year |
2011 |
Publication |
CVC Technical Report |
Abbreviated Journal |
|
|
| |
Volume |
165 |
Issue |
|
Pages |
|
|
| |
Keywords |
Rheumatoid arthritis, X-ray, Sharp Van der Heijde, joint characterization, sclerosis detection, bone detection, edge, ridge |
|
| |
Abstract |
Rheumatoid arthritis (RA) is an autoimmune inflammatory type of arthritis which mainly affects hands on its first stages. Though it is a chronic disease and there is no cure for it, treatments require an accurate assessment of illness evolution. Such assessment is based on evaluation of hand X-ray images by using one of the several available semi-quantitative methods. This task requires highly trained medical personnel. That is why the automation of the assessment would allow professionals to save time and effort. Two stages are involved in this task. Firstly, the joint detection, afterwards, the joint characterization. Unlike the little existing previous work, this contribution clearly separates those two stages and sets the foundations of a modular assessment system focusing on the characterization stage. A hand joint dataset is created and an accurate data analysis is achieved in order to identify relevant features. Since the sclerosis and the lower bone were decided to be the most important features, different computer vision techniques were used in order to develop a detector system for both of them. Joint space width measures are provided and their correlation with Sharp-Van der Heijde is verified |
|
| |
Address |
Bellaterra (Barcelona) |
|
| |
Corporate Author |
Computer Vision Center |
Thesis |
Master's thesis |
|
| |
Publisher |
|
Place of Publication |
|
Editor |
Dr. Fernando Vilariño and Dra. Debora Gil |
|
| |
Language |
|
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
|
ISBN |
|
Medium |
|
|
| |
Area |
|
Expedition |
|
Conference |
|
|
| |
Notes |
MV;IAM; |
Approved |
no |
|
| |
Call Number |
IAM @ iam @ Nuñ2011 |
Serial |
1795 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
Carles Sanchez |
|
| |
Title |
Tracheal ring detection in bronchoscopy |
Type |
Report |
| |
Year |
2011 |
Publication |
CVC Technical Report |
Abbreviated Journal |
|
|
| |
Volume |
168 |
Issue |
|
Pages |
|
|
| |
Keywords |
Bronchoscopy, tracheal ring, segmentation |
|
| |
Abstract |
Endoscopy is the process in which a camera is introduced inside a human.
Given that endoscopy provides realistic images (in contrast to other modalities) and allows non-invase minimal intervention procedures (which can aid in diagnosis and surgical interventions), its use has spreaded during last decades.
In this project we will focus on bronchoscopic procedures, during which the camera is introduced through the trachea in order to have a diagnostic of the patient. The diagnostic interventions are focused on: degree of stenosis (reduction in tracheal area), prosthesis or early diagnosis of tumors. In the first case, assessment of the luminal area and the calculation of the diameters of the tracheal rings are required. A main limitation is that all the process is done by hand,
which means that the doctor takes all the measurements and decisions just by looking at the screen. As far as we know there is no computational framework for helping the doctors in the diagnosis.
This project will consist of analysing bronchoscopic videos in order to extract useful information for the diagnostic of the degree of stenosis. In particular we will focus on segmentation of the tracheal rings. As a result of this project several strategies (for detecting tracheal rings) had been implemented in order to compare their performance. |
|
| |
Address |
|
|
| |
Corporate Author |
|
Thesis |
Master's thesis |
|
| |
Publisher |
|
Place of Publication |
|
Editor |
Debora Gil, F.Javier Sanchez |
|
| |
Language |
english |
Summary Language |
english |
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
|
ISBN |
|
Medium |
|
|
| |
Area |
|
Expedition |
|
Conference |
|
|
| |
Notes |
IAM;MV |
Approved |
no |
|
| |
Call Number |
IAM @ iam @ San2011 |
Serial |
1841 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
Sergio Vera; Debora Gil; Agnes Borras; F. Javier Sanchez; Frederic Perez; Marius G. Linguraru |
|
| |
Title |
Computation and Evaluation of Medial Surfaces for Shape Representation of Abdominal Organs |
Type |
Conference Article |
| |
Year |
2011 |
Publication |
Workshop on Computational and Clinical Applications in Abdominal Imaging |
Abbreviated Journal |
|
|
| |
Volume |
7029 |
Issue |
|
Pages |
223-230 |
|
| |
Keywords |
|
|
| |
Abstract |
Medial representations are powerful tools for describing and parameterizing the volumetric shape of anatomical structures. Existing methods show excellent results when applied to 2D objects, but their quality drops across dimensions. This paper contributes to the computation of medial manifolds in two aspects. First, we provide a standard scheme for the computation of medial manifolds that avoid degenerated medial axis segments; second, we introduce an energy based method which performs independently of the dimension. We evaluate quantitatively the performance of our method with respect to existing approaches, by applying them to synthetic shapes of known medial geometry. Finally, we show results on shape representation of multiple abdominal organs, exploring the use of medial manifolds for the representation of multi-organ relations. |
|
| |
Address |
Nice, France |
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
Springer Berlin Heidelberg |
Place of Publication |
|
Editor |
In H. Yoshida et al |
|
| |
Language |
|
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
|
ISBN |
|
Medium |
|
|
| |
Area |
|
Expedition |
|
Conference |
ABDI |
|
| |
Notes |
IAM; MV |
Approved |
no |
|
| |
Call Number |
VGB2011 |
Serial |
2036 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
Francesc Carreras; Jaume Garcia; Debora Gil; Sandra Pujadas; Chi ho Lion; R.Suarez-Arias; R.Leta; Xavier Alomar; Manuel Ballester; Guillem Pons-Llados |
|
| |
Title |
Left ventricular torsion and longitudinal shortening: two fundamental components of myocardial mechanics assessed by tagged cine-MRI in normal subjects |
Type |
Journal Article |
| |
Year |
2012 |
Publication |
International Journal of Cardiovascular Imaging |
Abbreviated Journal |
IJCI |
|
| |
Volume |
28 |
Issue |
2 |
Pages |
273-284 |
|
| |
Keywords |
Magnetic resonance imaging (MRI); Tagging MRI; Cardiac mechanics; Ventricular torsion |
|
| |
Abstract |
Cardiac magnetic resonance imaging (Cardiac MRI) has become a gold standard diagnostic technique for the assessment of cardiac mechanics, allowing the non-invasive calculation of left ventric- ular long axis longitudinal shortening (LVLS) and absolute myocardial torsion (AMT) between basal and apical left ventricular slices, a movement directly related to the helicoidal anatomic disposition of the myocardial fibers. The aim of this study is to determine AMT and LVLS behaviour and normal values from a group of healthy subjects. A group of 21 healthy volunteers (15 males) (age: 23–55 y.o., mean:30.7 ± 7.5) were prospectively included in an obser- vational study by Cardiac MRI. Left ventricular rotation (degrees) was calculated by custom-made software (Harmonic Phase Flow) in consecutive LV short axis planes tagged cine-MRI sequences. AMT was determined from the difference between basal and apical planes LV rotations. LVLS (%) was determined from the LV longitudinal and horizontal axis cine-MRI images. All the 21 cases studied were interpretable, although in three cases the value of the LV apical rotation could not be determined. The mean rotation of the basal and apical planes at end-systole were -3.71° ± 0.84° and 6.73° ± 1.69° (n:18) respectively, resulting in a LV mean AMT of 10.48° ± 1.63° (n:18). End-systolic mean LVLS was 19.07 ± 2.71%. Cardiac MRI allows for the calculation of AMT and LVLS, fundamental functional components of the ventricular twist mechanics conditioned, in turn, by the anatomical helical layout of the myocardial fibers. These values provide complementary information about systolic ventricular function in relation to the traditional parameters used in daily practice. |
|
| |
Address |
|
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
Springer Netherlands |
Place of Publication |
|
Editor |
|
|
| |
Language |
|
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
1569-5794 |
ISBN |
|
Medium |
|
|
| |
Area |
|
Expedition |
|
Conference |
|
|
| |
Notes |
IAM; |
Approved |
no |
|
| |
Call Number |
IAM @ iam @ CGG2012 |
Serial |
1496 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
Aura Hernandez-Sabate; Debora Gil |
|
| |
Title |
The Benefits of IVUS Dynamics for Retrieving Stable Models of Arteries |
Type |
Book Chapter |
| |
Year |
2012 |
Publication |
Intravascular Ultrasound |
Abbreviated Journal |
|
|
| |
Volume |
|
Issue |
|
Pages |
185-206 |
|
| |
Keywords |
|
|
| |
Abstract |
|
|
| |
Address |
|
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
Intech |
Place of Publication |
|
Editor |
Yasuhiro Honda |
|
| |
Language |
English |
Summary Language |
english |
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
|
ISBN |
978-953-307-900-4 |
Medium |
|
|
| |
Area |
|
Expedition |
|
Conference |
|
|
| |
Notes |
IAM; ADAS |
Approved |
no |
|
| |
Call Number |
IAM @ iam @ HeG2012 |
Serial |
1684 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
Sergio Vera; Debora Gil; Agnes Borras; F. Javier Sanchez; Frederic Perez; Marius G. Linguraru; Miguel Angel Gonzalez Ballester |
|
| |
Title |
Computation and Evaluation of Medial Surfaces for Shape Representation of Abdominal Organs |
Type |
Book Chapter |
| |
Year |
2012 |
Publication |
Workshop on Computational and Clinical Applications in Abdominal Imaging |
Abbreviated Journal |
|
|
| |
Volume |
7029 |
Issue |
|
Pages |
223–230 |
|
| |
Keywords |
medial manifolds, abdomen. |
|
| |
Abstract |
Medial representations are powerful tools for describing and parameterizing the volumetric shape of anatomical structures. Existing methods show excellent results when applied to 2D
objects, but their quality drops across dimensions. This paper contributes to the computation of medial manifolds in two aspects. First, we provide a standard scheme for the computation of medial
manifolds that avoid degenerated medial axis segments; second, we introduce an energy based method which performs independently of the dimension. We evaluate quantitatively the performance of our
method with respect to existing approaches, by applying them to synthetic shapes of known medial geometry. Finally, we show results on shape representation of multiple abdominal organs,
exploring the use of medial manifolds for the representation of multi-organ relations. |
|
| |
Address |
Toronto; Canada; |
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
Springer Link |
Place of Publication |
Berlin |
Editor |
H. Yoshida et al |
|
| |
Language |
English |
Summary Language |
English |
Original Title |
|
|
| |
Series Editor |
|
Series Title |
Lecture Notes in Computer Science |
Abbreviated Series Title |
LNCS |
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
0302-9743 |
ISBN |
978-3-642-28556-1 |
Medium |
|
|
| |
Area |
|
Expedition |
|
Conference |
ABDI |
|
| |
Notes |
IAM;MV |
Approved |
no |
|
| |
Call Number |
IAM @ iam @ VGB2012 |
Serial |
1834 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
Sergio Vera; Debora Gil; Antonio Lopez; Miguel Angel Gonzalez Ballester |
|
| |
Title |
Multilocal Creaseness Measure |
Type |
Journal |
| |
Year |
2012 |
Publication |
The Insight Journal |
Abbreviated Journal |
IJ |
|
| |
Volume |
|
Issue |
|
Pages |
|
|
| |
Keywords |
Ridges, Valley, Creaseness, Structure Tensor, Skeleton, |
|
| |
Abstract |
This document describes the implementation using the Insight Toolkit of an algorithm for detecting creases (ridges and valleys) in N-dimensional images, based on the Local Structure Tensor of the image. In addition to the filter used to calculate the creaseness image, a filter for the computation of the structure tensor is also included in this submission. |
|
| |
Address |
|
|
| |
Corporate Author |
Alma IT Systems |
Thesis |
|
|
| |
Publisher |
|
Place of Publication |
|
Editor |
|
|
| |
Language |
english |
Summary Language |
english |
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
|
ISBN |
|
Medium |
|
|
| |
Area |
|
Expedition |
|
Conference |
|
|
| |
Notes |
IAM;ADAS; |
Approved |
no |
|
| |
Call Number |
IAM @ iam @ VGL2012 |
Serial |
1840 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
David Roche; Debora Gil; Jesus Giraldo |
|
| |
Title |
Assessing agonist efficacy in an uncertain Em world |
Type |
Conference Article |
| |
Year |
2012 |
Publication |
40th Keystone Symposia on mollecular and celular biology |
Abbreviated Journal |
|
|
| |
Volume |
|
Issue |
|
Pages |
79 |
|
| |
Keywords |
|
|
| |
Abstract |
The operational model of agonism has been widely used for the analysis of agonist action since its formulation in 1983. The model includes the Em parameter, which is defined as the maximum response of the system. The methods for Em estimation provide Em values not significantly higher than the maximum responses achieved by full agonists. However, it has been found that that some classes of compounds as, for instance, superagonists and positive allosteric modulators can increase the full agonist maximum response, implying upper limits for Em and thereby posing doubts on the validity of Em estimates. Because of the correlation between Em and operational efficacy, τ, wrong Em estimates will yield wrong τ estimates.
In this presentation, the operational model of agonism and various methods for the simulation of allosteric modulation will be analyzed. Alternatives for curve fitting will be presented and discussed. |
|
| |
Address |
Fairmont Banff Springs, Banff, Alberta, Canada |
|
| |
Corporate Author |
Keystone Symposia |
Thesis |
|
|
| |
Publisher |
Keystone Symposia |
Place of Publication |
|
Editor |
A. Christopoulus and M. Bouvier |
|
| |
Language |
english |
Summary Language |
english |
Original Title |
|
|
| |
Series Editor |
Keystone Symposia |
Series Title |
|
Abbreviated Series Title |
|
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
|
ISBN |
|
Medium |
|
|
| |
Area |
|
Expedition |
|
Conference |
KSMCB |
|
| |
Notes |
IAM |
Approved |
no |
|
| |
Call Number |
IAM @ iam @ RGG2012 |
Serial |
1855 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
Alberto Hidalgo; Ferran Poveda; Enric Marti;Debora Gil;Albert Andaluz; Francesc Carreras; Manuel Ballester |
|
| |
Title |
Evidence of continuous helical structure of the cardiac ventricular anatomy assessed by diffusion tensor imaging magnetic resonance multiresolution tractography |
Type |
Journal Article |
| |
Year |
2012 |
Publication |
European Radiology |
Abbreviated Journal |
ECR |
|
| |
Volume |
3 |
Issue |
1 |
Pages |
361-362 |
|
| |
Keywords |
|
|
| |
Abstract |
Deep understanding of myocardial structure linking morphology and func- tion of the heart would unravel crucial knowledge for medical and surgical clinical procedures and studies. Diffusion tensor MRI provides a discrete measurement of the 3D arrangement of myocardial fibres by the observation of local anisotropic
diffusion of water molecules in biological tissues. In this work, we present a multi- scale visualisation technique based on DT-MRI streamlining capable of uncovering additional properties of the architectural organisation of the heart. Methods and Materials: We selected the John Hopkins University (JHU) Canine Heart Dataset, where the long axis cardiac plane is aligned with the scanner’s Z- axis. Their equipment included a 4-element passed array coil emitting a 1.5 T. For DTI acquisition, a 3D-FSE sequence is apply. We used 200 seeds for full-scale tractography, while we applied a MIP mapping technique for simplified tractographic reconstruction. In this case, we reduced each DTI 3D volume dimensions by order- two magnitude before streamlining.
Our simplified tractographic reconstruction method keeps the main geometric features of fibres, allowing for an easier identification of their global morphological disposition, including the ventricular basal ring. Moreover, we noticed a clearly visible helical disposition of the myocardial fibres, in line with the helical myocardial band ventricular structure described by Torrent-Guasp. Finally, our simplified visualisation with single tracts identifies the main segments of the helical ventricular architecture.
DT-MRI makes possible the identification of a continuous helical architecture of the myocardial fibres, which validates Torrent-Guasp’s helical myocardial band ventricular anatomical model. |
|
| |
Address |
Viena, Austria |
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
Springer Link |
Place of Publication |
|
Editor |
|
|
| |
Language |
|
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
1869-4101 |
ISBN |
|
Medium |
|
|
| |
Area |
|
Expedition |
|
Conference |
|
|
| |
Notes |
IAM |
Approved |
no |
|
| |
Call Number |
IAM @ iam @ HPM2012 |
Serial |
1858 |
|
| Permanent link to this record |
