| |
Records |
Links |
|
Author |
Debora Gil; Aura Hernandez-Sabate; Mireia Burnat; Steven Jansen; Jordi Martinez-Vilalta |
|
| |
Title |
Structure-Preserving Smoothing of Biomedical Images |
Type |
Conference Article |
| |
Year |
2009 |
Publication |
13th International Conference on Computer Analysis of Images and Patterns |
Abbreviated Journal |
|
|
| |
Volume |
5702 |
Issue |
|
Pages |
427-434 |
|
| |
Keywords |
non-linear smoothing; differential geometry; anatomical structures segmentation; cardiac magnetic resonance; computerized tomography. |
|
| |
Abstract |
Smoothing of biomedical images should preserve gray-level transitions between adjacent tissues, while restoring contours consistent with anatomical structures. Anisotropic diffusion operators are based on image appearance discontinuities (either local or contextual) and might fail at weak inter-tissue transitions. Meanwhile, the output of block-wise and morphological operations is prone to present a block structure due to the shape and size of the considered pixel neighborhood. In this contribution, we use differential geometry concepts to define a diffusion operator that restricts to image consistent level-sets. In this manner, the final state is a non-uniform intensity image presenting homogeneous inter-tissue transitions along anatomical structures, while smoothing intra-structure texture. Experiments on different types of medical images (magnetic resonance, computerized tomography) illustrate its benefit on a further process (such as segmentation) of images. |
|
| |
Address |
Münster, Germany |
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
Springer Berlin Heidelberg |
Place of Publication |
|
Editor |
|
|
| |
Language |
|
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
LNCS |
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
0302-9743 |
ISBN  |
978-3-642-03766-5 |
Medium |
|
|
| |
Area |
|
Expedition |
|
Conference |
CAIP |
|
| |
Notes |
IAM |
Approved |
no |
|
| |
Call Number |
IAM @ iam @ GHB2009 |
Serial |
1527 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
Sergio Vera; Debora Gil; Agnes Borras; F. Javier Sanchez; Frederic Perez; Marius G. Linguraru; Miguel Angel Gonzalez Ballester |
|
| |
Title |
Computation and Evaluation of Medial Surfaces for Shape Representation of Abdominal Organs |
Type |
Book Chapter |
| |
Year |
2012 |
Publication |
Workshop on Computational and Clinical Applications in Abdominal Imaging |
Abbreviated Journal |
|
|
| |
Volume |
7029 |
Issue |
|
Pages |
223–230 |
|
| |
Keywords |
medial manifolds, abdomen. |
|
| |
Abstract |
Medial representations are powerful tools for describing and parameterizing the volumetric shape of anatomical structures. Existing methods show excellent results when applied to 2D
objects, but their quality drops across dimensions. This paper contributes to the computation of medial manifolds in two aspects. First, we provide a standard scheme for the computation of medial
manifolds that avoid degenerated medial axis segments; second, we introduce an energy based method which performs independently of the dimension. We evaluate quantitatively the performance of our
method with respect to existing approaches, by applying them to synthetic shapes of known medial geometry. Finally, we show results on shape representation of multiple abdominal organs,
exploring the use of medial manifolds for the representation of multi-organ relations. |
|
| |
Address |
Toronto; Canada; |
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
Springer Link |
Place of Publication |
Berlin |
Editor |
H. Yoshida et al |
|
| |
Language |
English |
Summary Language |
English |
Original Title |
|
|
| |
Series Editor |
|
Series Title |
Lecture Notes in Computer Science |
Abbreviated Series Title |
LNCS |
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
0302-9743 |
ISBN |
978-3-642-28556-1 |
Medium |
|
|
| |
Area |
|
Expedition |
|
Conference |
ABDI |
|
| |
Notes |
IAM;MV |
Approved |
no |
|
| |
Call Number |
IAM @ iam @ VGB2012 |
Serial |
1834 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
Patricia Marquez; Debora Gil ; Aura Hernandez-Sabate |
|
| |
Title |
Error Analysis for Lucas-Kanade Based Schemes |
Type |
Conference Article |
| |
Year |
2012 |
Publication |
9th International Conference on Image Analysis and Recognition |
Abbreviated Journal |
|
|
| |
Volume |
7324 |
Issue |
I |
Pages |
184-191 |
|
| |
Keywords |
Optical flow, Confidence measure, Lucas-Kanade, Cardiac Magnetic Resonance |
|
| |
Abstract |
Optical flow is a valuable tool for motion analysis in medical imaging sequences. A reliable application requires determining the accuracy of the computed optical flow. This is a main challenge given the absence of ground truth in medical sequences. This paper presents an error analysis of Lucas-Kanade schemes in terms of intrinsic design errors and numerical stability of the algorithm. Our analysis provides a confidence measure that is naturally correlated to the accuracy of the flow field. Our experiments show the higher predictive value of our confidence measure compared to existing measures. |
|
| |
Address |
Aveiro, Portugal |
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
Springer-Verlag Berlin Heidelberg |
Place of Publication |
|
Editor |
|
|
| |
Language |
english |
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
Campilho, Aurélio and Kamel, Mohamed |
Series Title |
Lecture Notes in Computer Science |
Abbreviated Series Title |
LNCS |
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
0302-9743 |
ISBN |
978-3-642-31294-6 |
Medium |
|
|
| |
Area |
|
Expedition |
|
Conference |
ICIAR |
|
| |
Notes |
IAM |
Approved |
no |
|
| |
Call Number |
IAM @ iam @ MGH2012a |
Serial |
1899 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
Carles Sanchez;F. Javier Sanchez; Antoni Rosell; Debora Gil |
|
| |
Title |
An illumination model of the trachea appearance in videobronchoscopy images |
Type |
Book Chapter |
| |
Year |
2012 |
Publication |
Image Analysis and Recognition |
Abbreviated Journal |
LNCS |
|
| |
Volume |
7325 |
Issue |
|
Pages |
313-320 |
|
| |
Keywords |
Bronchoscopy, tracheal ring, stenosis assesment, trachea appearance model, segmentation |
|
| |
Abstract |
Videobronchoscopy is a medical imaging technique that allows interactive navigation inside the respiratory pathways. This imaging modality provides realistic images and allows non-invasive minimal intervention procedures. Tracheal procedures are routinary interventions that require assessment of the percentage of obstructed pathway for injury (stenosis) detection. Visual assessment in videobronchoscopic sequences requires high expertise of trachea anatomy and is prone to human error.
This paper introduces an automatic method for the estimation of steneosed trachea percentage reduction in videobronchoscopic images. We look for tracheal rings , whose deformation determines the degree of obstruction. For ring extraction , we present a ring detector based on an illumination and appearance model. This model allows us to parametrise the ring detection. Finally, we can infer optimal estimation parameters for any video resolution. |
|
| |
Address |
Aveiro, Portugal |
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
Springer Berlin Heidelberg |
Place of Publication |
|
Editor |
|
|
| |
Language |
|
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
Lecture Notes in Computer Science |
Abbreviated Series Title |
LNCS |
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
0302-9743 |
ISBN |
978-3-642-31297-7 |
Medium |
|
|
| |
Area |
800 |
Expedition |
|
Conference |
ICIAR |
|
| |
Notes |
MV;IAM |
Approved |
no |
|
| |
Call Number |
IAM @ iam @ SSR2012 |
Serial |
1898 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
Sergio Vera; Miguel Angel Gonzalez Ballester; Debora Gil |
|
| |
Title |
Optimal Medial Surface Generation for Anatomical Volume Representations |
Type |
Book Chapter |
| |
Year |
2012 |
Publication |
Abdominal Imaging. Computational and Clinical Applications |
Abbreviated Journal |
LNCS |
|
| |
Volume |
7601 |
Issue |
|
Pages |
265-273 |
|
| |
Keywords |
Medial surface representation; volume reconstruction |
|
| |
Abstract |
Medial representations are a widely used technique in abdominal organ shape representation and parametrization. Those methods require good medial manifolds as a starting point. Any medial
surface used to parametrize a volume should be simple enough to allow an easy manipulation and complete enough to allow an accurate reconstruction of the volume. Obtaining good quality medial
surfaces is still a problem with current iterative thinning methods. This forces the usage of generic, pre-calculated medial templates that are adapted to the final shape at the cost of a drop in volume reconstruction.
This paper describes an operator for generation of medial structures that generates clean and complete manifolds well suited for their further use in medial representations of abdominal organ volumes. While being simpler than thinning surfaces, experiments show its high performance in volume reconstruction and preservation of medial surface main branching topology. |
|
| |
Address |
Nice, France |
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
Springer Berlin Heidelberg |
Place of Publication |
|
Editor |
Yoshida, Hiroyuki and Hawkes, David and Vannier, MichaelW. |
|
| |
Language |
|
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
Lecture Notes in Computer Science |
Abbreviated Series Title |
|
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
0302-9743 |
ISBN |
978-3-642-33611-9 |
Medium |
|
|
| |
Area |
|
Expedition |
|
Conference |
STACOM |
|
| |
Notes |
IAM |
Approved |
no |
|
| |
Call Number |
IAM @ iam @ VGG2012b |
Serial |
1988 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
Patricia Marquez;Debora Gil;Aura Hernandez-Sabate |
|
| |
Title |
A Complete Confidence Framework for Optical Flow |
Type |
Conference Article |
| |
Year |
2012 |
Publication |
12th European Conference on Computer Vision – Workshops and Demonstrations |
Abbreviated Journal |
|
|
| |
Volume |
7584 |
Issue |
2 |
Pages |
124-133 |
|
| |
Keywords |
Optical flow, confidence measures, sparsification plots, error prediction plots |
|
| |
Abstract |
Medial representations are powerful tools for describing and parameterizing the volumetric shape of anatomical structures. Existing methods show excellent results when applied to 2D objects, but their quality drops across dimensions. This paper contributes to the computation of medial manifolds in two aspects. First, we provide a standard scheme for the computation of medial manifolds that avoid degenerated medial axis segments; second, we introduce an energy based method which performs independently of the dimension. We evaluate quantitatively the performance of our method with respect to existing approaches, by applying them to synthetic shapes of known medial geometry. Finally, we show results on shape representation of multiple abdominal organs, exploring the use of medial manifolds for the representation of multi-organ relations. |
|
| |
Address |
|
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
Springer-Verlag |
Place of Publication |
Florence, Italy, October 7-13, 2012 |
Editor |
Andrea Fusiello, Vittorio Murino ,Rita Cucchiara |
|
| |
Language |
|
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
LNCS |
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
|
ISBN |
978-3-642-33867-0 |
Medium |
|
|
| |
Area |
|
Expedition |
|
Conference |
ECCVW |
|
| |
Notes |
IAM;ADAS; |
Approved |
no |
|
| |
Call Number |
IAM @ iam @ MGH2012b |
Serial |
1991 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
Ferran Poveda; Debora Gil;Enric Marti |
|
| |
Title |
Multi-resolution DT-MRI cardiac tractography |
Type |
Conference Article |
| |
Year |
2012 |
Publication |
Statistical Atlases And Computational Models Of The Heart: Imaging and Modelling Challenges |
Abbreviated Journal |
|
|
| |
Volume |
7746 |
Issue |
|
Pages |
270-277 |
|
| |
Keywords |
|
|
| |
Abstract |
Even using objective measures from DT-MRI no consensus about myocardial architecture has been achieved so far. Streamlining provides good reconstructions at low level of detail, but falls short to give global abstract interpretations. In this paper, we present a multi-resolution methodology that is able to produce simplified representations of cardiac architecture. Our approach produces a reduced set of tracts that are representative of the main geometric features of myocardial anatomical structure. Experiments show that fiber geometry is preserved along reductions, which validates the simplified model for interpretation of cardiac architecture. |
|
| |
Address |
Nice, France |
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
Springer Berlin Heidelberg |
Place of Publication |
|
Editor |
|
|
| |
Language |
|
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
LNCS |
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
0302-9743 |
ISBN |
978-3-642-36960-5 |
Medium |
|
|
| |
Area |
|
Expedition |
|
Conference |
STACOM |
|
| |
Notes |
IAM |
Approved |
no |
|
| |
Call Number |
IAM @ iam @ PGM2012 |
Serial |
1986 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
Debora Gil;Agnes Borras;Ruth Aris;Mariano Vazquez;Pierre Lafortune; Guillame Houzeaux |
|
| |
Title |
What a difference in biomechanics cardiac fiber makes |
Type |
Conference Article |
| |
Year |
2012 |
Publication |
Statistical Atlases And Computational Models Of The Heart: Imaging and Modelling Challenges |
Abbreviated Journal |
|
|
| |
Volume |
7746 |
Issue |
|
Pages |
253-260 |
|
| |
Keywords |
|
|
| |
Abstract |
Computational simulations of the heart are a powerful tool for a comprehensive understanding of cardiac function and its intrinsic relationship with its muscular architecture. Cardiac biomechanical models require a vector field representing the orientation of cardiac fibers. A wrong orientation of the fibers can lead to a
non-realistic simulation of the heart functionality. In this paper we explore the impact of the fiber information on the simulated biomechanics of cardiac muscular anatomy. We have used the John Hopkins database to perform a biomechanical simulation using both a synthetic benchmark fiber distribution and the data obtained experimentally from DTI. Results illustrate how differences in fiber orientation affect heart deformation along cardiac cycle. |
|
| |
Address |
Nice, France |
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
Springer Berlin Heidelberg |
Place of Publication |
|
Editor |
|
|
| |
Language |
|
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
0302-9743 |
ISBN |
978-3-642-36960-5 |
Medium |
|
|
| |
Area |
|
Expedition |
|
Conference |
STACOM |
|
| |
Notes |
IAM |
Approved |
no |
|
| |
Call Number |
IAM @ iam @ GBA2012 |
Serial |
1987 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
Debora Gil; Agnes Borras; Sergio Vera; Miguel Angel Gonzalez Ballester |
|
| |
Title |
A Validation Benchmark for Assessment of Medial Surface Quality for Medical Applications |
Type |
Conference Article |
| |
Year |
2013 |
Publication |
9th International Conference on Computer Vision Systems |
Abbreviated Journal |
|
|
| |
Volume |
7963 |
Issue |
|
Pages |
334-343 |
|
| |
Keywords |
Medial Surfaces; Shape Representation; Medical Applications; Performance Evaluation |
|
| |
Abstract |
Confident use of medial surfaces in medical decision support systems requires evaluating their quality for detecting pathological deformations and describing anatomical volumes. Validation in the medical imaging field is a challenging task mainly due to the difficulties for getting consensual ground truth. In this paper we propose a validation benchmark for assessing medial surfaces in the context of medical applications. Our benchmark includes a home-made database of synthetic medial surfaces and volumes and specific scores for evaluating surface accuracy, its stability against volume deformations and its capabilities for accurate reconstruction of anatomical volumes. |
|
| |
Address |
Sant Petersburg; Russia; July 2013 |
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
Springer Berlin Heidelberg |
Place of Publication |
|
Editor |
|
|
| |
Language |
|
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
LNCS |
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
0302-9743 |
ISBN |
978-3-642-39401-0 |
Medium |
|
|
| |
Area |
|
Expedition |
|
Conference |
ICVS |
|
| |
Notes |
IAM; 600.044; 600.060 |
Approved |
no |
|
| |
Call Number |
Admin @ si @ GBV2013 |
Serial |
2300 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
Patricia Marquez; Debora Gil; Aura Hernandez-Sabate; Daniel Kondermann |
|
| |
Title |
When Is A Confidence Measure Good Enough? |
Type |
Conference Article |
| |
Year |
2013 |
Publication |
9th International Conference on Computer Vision Systems |
Abbreviated Journal |
|
|
| |
Volume |
7963 |
Issue |
|
Pages |
344-353 |
|
| |
Keywords |
Optical flow, confidence measure, performance evaluation |
|
| |
Abstract |
Confidence estimation has recently become a hot topic in image processing and computer vision.Yet, several definitions exist of the term “confidence” which are sometimes used interchangeably. This is a position paper, in which we aim to give an overview on existing definitions,
thereby clarifying the meaning of the used terms to facilitate further research in this field. Based on these clarifications, we develop a theory to compare confidence measures with respect to their quality. |
|
| |
Address |
St Petersburg; Russia; July 2013 |
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
Springer Link |
Place of Publication |
|
Editor |
|
|
| |
Language |
|
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
LNCS |
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
0302-9743 |
ISBN |
978-3-642-39401-0 |
Medium |
|
|
| |
Area |
|
Expedition |
|
Conference |
ICVS |
|
| |
Notes |
IAM;ADAS; 600.044; 600.057; 600.060; 601.145 |
Approved |
no |
|
| |
Call Number |
IAM @ iam @ MGH2013a |
Serial |
2218 |
|
| Permanent link to this record |
