Simone Balocco, O. Camara, E. Vivas, T. Sola, L. Guimaraens, H. A. van Andel, et al. (2010). Feasibility of Estimating Regional Mechanical Properties of Cerebral Aneurysms In Vivo. MEDPHYS - Medical Physics, 37(4), 1689–1706.
Abstract: PURPOSE:
In this article, the authors studied the feasibility of estimating regional mechanical properties in cerebral aneurysms, integrating information extracted from imaging and physiological data with generic computational models of the arterial wall behavior.
METHODS:
A data assimilation framework was developed to incorporate patient-specific geometries into a given biomechanical model, whereas wall motion estimates were obtained from applying registration techniques to a pair of simulated MR images and guided the mechanical parameter estimation. A simple incompressible linear and isotropic Hookean model coupled with computational fluid-dynamics was employed as a first approximation for computational purposes. Additionally, an automatic clustering technique was developed to reduce the number of parameters to assimilate at the optimization stage and it considerably accelerated the convergence of the simulations. Several in silico experiments were designed to assess the influence of aneurysm geometrical characteristics and the accuracy of wall motion estimates on the mechanical property estimates. Hence, the proposed methodology was applied to six real cerebral aneurysms and tested against a varying number of regions with different elasticity, different mesh discretization, imaging resolution, and registration configurations.
RESULTS:
Several in silico experiments were conducted to investigate the feasibility of the proposed workflow, results found suggesting that the estimation of the mechanical properties was mainly influenced by the image spatial resolution and the chosen registration configuration. According to the in silico experiments, the minimal spatial resolution needed to extract wall pulsation measurements with enough accuracy to guide the proposed data assimilation framework was of 0.1 mm.
CONCLUSIONS:
Current routine imaging modalities do not have such a high spatial resolution and therefore the proposed data assimilation framework cannot currently be used on in vivo data to reliably estimate regional properties in cerebral aneurysms. Besides, it was observed that the incorporation of fluid-structure interaction in a biomechanical model with linear and isotropic material properties did not have a substantial influence in the final results.
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Aura Hernandez-Sabate, Monica Mitiko, Sergio Shiguemi, & Debora Gil. (2010). A validation protocol for assessing cardiac phase retrieval in IntraVascular UltraSound. In Computing in Cardiology (Vol. 37, pp. 899–902). IEEE.
Abstract: A good reliable approach to cardiac triggering is of utmost importance in obtaining accurate quantitative results of atherosclerotic plaque burden from the analysis of IntraVascular UltraSound. Although, in the last years, there has been an increase in research of methods for retrospective gating, there is no general consensus in a validation protocol. Many methods are based on quality assessment of longitudinal cuts appearance and those reporting quantitative numbers do not follow a standard protocol. Such heterogeneity in validation protocols makes faithful comparison across methods a difficult task. We propose a validation protocol based on the variability of the retrieved cardiac phase and explore the capability of several quality measures for quantifying such variability. An ideal detector, suitable for its application in clinical practice, should produce stable phases. That is, it should always sample the same cardiac cycle fraction. In this context, one should measure the variability (variance) of a candidate sampling with respect a ground truth (reference) sampling, since the variance would indicate how spread we are aiming a target. In order to quantify the deviation between the sampling and the ground truth, we have considered two quality scores reported in the literature: signed distance to the closest reference sample and distance to the right of each reference sample. We have also considered the residuals of the regression line of reference against candidate sampling. The performance of the measures has been explored on a set of synthetic samplings covering different cardiac cycle fractions and variabilities. From our simulations, we conclude that the metrics related to distances are sensitive to the shift considered while the residuals are robust against fraction and variabilities as far as one can establish a pair-wise correspondence between candidate and reference. We will further investigate the impact of false positive and negative detections in experimental data.
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Ernest Valveny, Robert Benavente, Agata Lapedriza, Miquel Ferrer, Jaume Garcia, & Gemma Sanchez. (2012). Adaptation of a computer programming course to the EXHE requirements: evaluation five years later (Vol. 37).
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Laura Igual, Agata Lapedriza, & Ricard Borras. (2013). Robust Gait-Based Gender Classification using Depth Cameras. EURASIPJ - EURASIP Journal on Advances in Signal Processing, 37(1), 72–80.
Abstract: This article presents a new approach for gait-based gender recognition using depth cameras, that can run in real time. The main contribution of this study is a new fast feature extraction strategy that uses the 3D point cloud obtained from the frames in a gait cycle. For each frame, these points are aligned according to their centroid and grouped. After that, they are projected into their PCA plane, obtaining a representation of the cycle particularly robust against view changes. Then, final discriminative features are computed by first making a histogram of the projected points and then using linear discriminant analysis. To test the method we have used the DGait database, which is currently the only publicly available database for gait analysis that includes depth information. We have performed experiments on manually labeled cycles and over whole video sequences, and the results show that our method improves the accuracy significantly, compared with state-of-the-art systems which do not use depth information. Furthermore, our approach is insensitive to illumination changes, given that it discards the RGB information. That makes the method especially suitable for real applications, as illustrated in the last part of the experiments section.
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Michal Drozdzal, Santiago Segui, Carolina Malagelada, Fernando Azpiroz, & Petia Radeva. (2013). Adaptable image cuts for motility inspection using WCE. CMIG - Computerized Medical Imaging and Graphics, 37(1), 72–80.
Abstract: The Wireless Capsule Endoscopy (WCE) technology allows the visualization of the whole small intestine tract. Since the capsule is freely moving, mainly by the means of peristalsis, the data acquired during the study gives a lot of information about the intestinal motility. However, due to: (1) huge amount of frames, (2) complex intestinal scene appearance and (3) intestinal dynamics that make difficult the visualization of the small intestine physiological phenomena, the analysis of the WCE data requires computer-aided systems to speed up the analysis. In this paper, we propose an efficient algorithm for building a novel representation of the WCE video data, optimal for motility analysis and inspection. The algorithm transforms the 3D video data into 2D longitudinal view by choosing the most informative, from the intestinal motility point of view, part of each frame. This step maximizes the lumen visibility in its longitudinal extension. The task of finding “the best longitudinal view” has been defined as a cost function optimization problem which global minimum is obtained by using Dynamic Programming. Validation on both synthetic data and WCE data shows that the adaptive longitudinal view is a good alternative to the traditional motility analysis done by video analysis. The proposed novel data representation a new, holistic insight into the small intestine motility, allowing to easily define and analyze motility events that are difficult to spot by analyzing WCE video. Moreover, the visual inspection of small intestine motility is 4 times faster then by means of video skimming of the WCE.
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G. Lisanti, I. Masi, Andrew Bagdanov, & Alberto del Bimbo. (2015). Person Re-identification by Iterative Re-weighted Sparse Ranking. TPAMI - IEEE Transactions on Pattern Analysis and Machine Intelligence, 37(8), 1629–1642.
Abstract: In this paper we introduce a method for person re-identification based on discriminative, sparse basis expansions of targets in terms of a labeled gallery of known individuals. We propose an iterative extension to sparse discriminative classifiers capable of ranking many candidate targets. The approach makes use of soft- and hard- re-weighting to redistribute energy among the most relevant contributing elements and to ensure that the best candidates are ranked at each iteration. Our approach also leverages a novel visual descriptor which we show to be discriminative while remaining robust to pose and illumination variations. An extensive comparative evaluation is given demonstrating that our approach achieves state-of-the-art performance on single- and multi-shot person re-identification scenarios on the VIPeR, i-LIDS, ETHZ, and CAVIAR4REID datasets. The combination of our descriptor and iterative sparse basis expansion improves state-of-the-art rank-1 performance by six percentage points on VIPeR and by 20 on CAVIAR4REID compared to other methods with a single gallery image per person. With multiple gallery and probe images per person our approach improves by 17 percentage points the state-of-the-art on i-LIDS and by 72 on CAVIAR4REID at rank-1. The approach is also quite efficient, capable of single-shot person re-identification over galleries containing hundreds of individuals at about 30 re-identifications per second.
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Adriana Romero, Petia Radeva, & Carlo Gatta. (2015). Meta-parameter free unsupervised sparse feature learning. TPAMI - IEEE Transactions on Pattern Analysis and Machine Intelligence, 37(8), 1716–1722.
Abstract: We propose a meta-parameter free, off-the-shelf, simple and fast unsupervised feature learning algorithm, which exploits a new way of optimizing for sparsity. Experiments on CIFAR-10, STL- 10 and UCMerced show that the method achieves the state-of-theart performance, providing discriminative features that generalize well.
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Marçal Rusiñol, & Josep Llados. (2017). Flowchart Recognition in Patent Information Retrieval. In M. Lupu, K. Mayer, N. Kando, & A.J. Trippe (Eds.), Current Challenges in Patent Information Retrieval (Vol. 37, pp. 351–368). Springer Berlin Heidelberg.
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Hassan Ahmed Sial, Ramon Baldrich, & Maria Vanrell. (2020). Deep intrinsic decomposition trained on surreal scenes yet with realistic light effects. JOSA A - Journal of the Optical Society of America A, 37(1), 1–15.
Abstract: Estimation of intrinsic images still remains a challenging task due to weaknesses of ground-truth datasets, which either are too small or present non-realistic issues. On the other hand, end-to-end deep learning architectures start to achieve interesting results that we believe could be improved if important physical hints were not ignored. In this work, we present a twofold framework: (a) a flexible generation of images overcoming some classical dataset problems such as larger size jointly with coherent lighting appearance; and (b) a flexible architecture tying physical properties through intrinsic losses. Our proposal is versatile, presents low computation time, and achieves state-of-the-art results.
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Mohamed Ali Souibgui, Sanket Biswas, Andres Mafla, Ali Furkan Biten, Alicia Fornes, Yousri Kessentini, et al. (2023). Text-DIAE: a self-supervised degradation invariant autoencoder for text recognition and document enhancement. In Proceedings of the 37th AAAI Conference on Artificial Intelligence (Vol. 37).
Abstract: In this paper, we propose a Text-Degradation Invariant Auto Encoder (Text-DIAE), a self-supervised model designed to tackle two tasks, text recognition (handwritten or scene-text) and document image enhancement. We start by employing a transformer-based architecture that incorporates three pretext tasks as learning objectives to be optimized during pre-training without the usage of labelled data. Each of the pretext objectives is specifically tailored for the final downstream tasks. We conduct several ablation experiments that confirm the design choice of the selected pretext tasks. Importantly, the proposed model does not exhibit limitations of previous state-of-the-art methods based on contrastive losses, while at the same time requiring substantially fewer data samples to converge. Finally, we demonstrate that our method surpasses the state-of-the-art in existing supervised and self-supervised settings in handwritten and scene text recognition and document image enhancement. Our code and trained models will be made publicly available at https://github.com/dali92002/SSL-OCR
Keywords: Representation Learning for Vision; CV Applications; CV Language and Vision; ML Unsupervised; Self-Supervised Learning
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Khanh Nguyen, Ali Furkan Biten, Andres Mafla, Lluis Gomez, & Dimosthenis Karatzas. (2023). Show, Interpret and Tell: Entity-Aware Contextualised Image Captioning in Wikipedia. In Proceedings of the 37th AAAI Conference on Artificial Intelligence (Vol. 37, pp. 1940–1948).
Abstract: Humans exploit prior knowledge to describe images, and are able to adapt their explanation to specific contextual information given, even to the extent of inventing plausible explanations when contextual information and images do not match. In this work, we propose the novel task of captioning Wikipedia images by integrating contextual knowledge. Specifically, we produce models that jointly reason over Wikipedia articles, Wikimedia images and their associated descriptions to produce contextualized captions. The same Wikimedia image can be used to illustrate different articles, and the produced caption needs to be adapted to the specific context allowing us to explore the limits of the model to adjust captions to different contextual information. Dealing with out-of-dictionary words and Named Entities is a challenging task in this domain. To address this, we propose a pre-training objective, Masked Named Entity Modeling (MNEM), and show that this pretext task results to significantly improved models. Furthermore, we verify that a model pre-trained in Wikipedia generalizes well to News Captioning datasets. We further define two different test splits according to the difficulty of the captioning task. We offer insights on the role and the importance of each modality and highlight the limitations of our model.
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Albert Gordo, Florent Perronnin, Yunchao Gong, & Svetlana Lazebnik. (2014). Asymmetric Distances for Binary Embeddings. TPAMI - IEEE Transactions on Pattern Analysis and Machine Intelligence, 36(1), 33–47.
Abstract: In large-scale query-by-example retrieval, embedding image signatures in a binary space offers two benefits: data compression and search efficiency. While most embedding algorithms binarize both query and database signatures, it has been noted that this is not strictly a requirement. Indeed, asymmetric schemes which binarize the database signatures but not the query still enjoy the same two benefits but may provide superior accuracy. In this work, we propose two general asymmetric distances which are applicable to a wide variety of embedding techniques including Locality Sensitive Hashing (LSH), Locality Sensitive Binary Codes (LSBC), Spectral Hashing (SH), PCA Embedding (PCAE), PCA Embedding with random rotations (PCAE-RR), and PCA Embedding with iterative quantization (PCAE-ITQ). We experiment on four public benchmarks containing up to 1M images and show that the proposed asymmetric distances consistently lead to large improvements over the symmetric Hamming distance for all binary embedding techniques.
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Jiaolong Xu, Sebastian Ramos, David Vazquez, & Antonio Lopez. (2014). Domain Adaptation of Deformable Part-Based Models. TPAMI - IEEE Transactions on Pattern Analysis and Machine Intelligence, 36(12), 2367–2380.
Abstract: The accuracy of object classifiers can significantly drop when the training data (source domain) and the application scenario (target domain) have inherent differences. Therefore, adapting the classifiers to the scenario in which they must operate is of paramount importance. We present novel domain adaptation (DA) methods for object detection. As proof of concept, we focus on adapting the state-of-the-art deformable part-based model (DPM) for pedestrian detection. We introduce an adaptive structural SVM (A-SSVM) that adapts a pre-learned classifier between different domains. By taking into account the inherent structure in feature space (e.g., the parts in a DPM), we propose a structure-aware A-SSVM (SA-SSVM). Neither A-SSVM nor SA-SSVM needs to revisit the source-domain training data to perform the adaptation. Rather, a low number of target-domain training examples (e.g., pedestrians) are used. To address the scenario where there are no target-domain annotated samples, we propose a self-adaptive DPM based on a self-paced learning (SPL) strategy and a Gaussian Process Regression (GPR). Two types of adaptation tasks are assessed: from both synthetic pedestrians and general persons (PASCAL VOC) to pedestrians imaged from an on-board camera. Results show that our proposals avoid accuracy drops as high as 15 points when comparing adapted and non-adapted detectors.
Keywords: Domain Adaptation; Pedestrian Detection
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C. Alejandro Parraga, Javier Vazquez, & Maria Vanrell. (2009). A new cone activation-based natural images dataset. PER - Perception, 36, 180.
Abstract: We generated a new dataset of digital natural images where each colour plane corresponds to the human LMS (long-, medium-, short-wavelength) cone activations. The images were chosen to represent five different visual environments (eg forest, seaside, mountain snow, urban, motorways) and were taken under natural illumination at different times of day. At the bottom-left corner of each picture there was a matte grey ball of approximately constant spectral reflectance (across the camera's response spectrum,) and nearly Lambertian reflective properties, which allows to compute (and remove, if necessary) the illuminant's colour and intensity. The camera (Sigma Foveon SD10) was calibrated by measuring its sensor's spectral responses using a set of 31 spectrally narrowband interference filters. This allowed conversion of the final camera-dependent RGB colour space into the Smith and Pokorny (1975) cone activation space by means of a polynomial transformation, optimised for a set of 1269 Munsell chip reflectances. This new method is an improvement over the usual 3 × 3 matrix transformation which is only accurate for spectrally-narrowband colours. The camera-to-LMS transformation can be recalculated to consider other non-human visual systems. The dataset is available to download from our website.
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Simone Balocco, Carlo Gatta, Oriol Pujol, J. Mauri, & Petia Radeva. (2010). SRBF: Speckle Reducing Bilateral Filtering. UMB - Ultrasound in Medicine and Biology, 36(8), 1353–1363.
Abstract: Speckle noise negatively affects medical ultrasound image shape interpretation and boundary detection. Speckle removal filters are widely used to selectively remove speckle noise without destroying important image features to enhance object boundaries. In this article, a fully automatic bilateral filter tailored to ultrasound images is proposed. The edge preservation property is obtained by embedding noise statistics in the filter framework. Consequently, the filter is able to tackle the multiplicative behavior modulating the smoothing strength with respect to local statistics. The in silico experiments clearly showed that the speckle reducing bilateral filter (SRBF) has superior performances to most of the state of the art filtering methods. The filter is tested on 50 in vivo US images and its influence on a segmentation task is quantified. The results using SRBF filtered data sets show a superior performance to using oriented anisotropic diffusion filtered images. This improvement is due to the adaptive support of SRBF and the embedded noise statistics, yielding a more homogeneous smoothing. SRBF results in a fully automatic, fast and flexible algorithm potentially suitable in wide ranges of speckle noise sizes, for different medical applications (IVUS, B-mode, 3-D matrix array US).
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