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Author Jorge Bernal; F. Javier Sanchez; Fernando Vilariño
Title Towards Automatic Polyp Detection with a Polyp Appearance Model Type Journal Article
Year 2012 Publication Pattern Recognition Abbreviated Journal PR
Volume (down) 45 Issue 9 Pages 3166-3182
Keywords Colonoscopy,PolypDetection,RegionSegmentation,SA-DOVA descriptot
Abstract This work aims at the automatic polyp detection by using a model of polyp appearance in the context of the analysis of colonoscopy videos. Our method consists of three stages: region segmentation, region description and region classification. The performance of our region segmentation method guarantees that if a polyp is present in the image, it will be exclusively and totally contained in a single region. The output of the algorithm also defines which regions can be considered as non-informative. We define as our region descriptor the novel Sector Accumulation-Depth of Valleys Accumulation (SA-DOVA), which provides a necessary but not sufficient condition for the polyp presence. Finally, we classify our segmented regions according to the maximal values of the SA-DOVA descriptor. Our preliminary classification results are promising, especially when classifying those parts of the image that do not contain a polyp inside.
Address
Corporate Author Thesis
Publisher Elsevier Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 0031-3203 ISBN Medium
Area 800 Expedition Conference IbPRIA
Notes MV;SIAI Approved no
Call Number Admin @ si @ BSV2012; IAM @ iam Serial 1997
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Author Fernando Vilariño; Panagiota Spyridonos; Fosca De Iorio; Jordi Vitria; Fernando Azpiroz; Petia Radeva
Title Intestinal Motility Assessment With Video Capsule Endoscopy: Automatic Annotation of Phasic Intestinal Contractions Type Journal Article
Year 2010 Publication IEEE Transactions on Medical Imaging Abbreviated Journal TMI
Volume (down) 29 Issue 2 Pages 246-259
Keywords
Abstract Intestinal motility assessment with video capsule endoscopy arises as a novel and challenging clinical fieldwork. This technique is based on the analysis of the patterns of intestinal contractions shown in a video provided by an ingestible capsule with a wireless micro-camera. The manual labeling of all the motility events requires large amount of time for offline screening in search of findings with low prevalence, which turns this procedure currently unpractical. In this paper, we propose a machine learning system to automatically detect the phasic intestinal contractions in video capsule endoscopy, driving a useful but not feasible clinical routine into a feasible clinical procedure. Our proposal is based on a sequential design which involves the analysis of textural, color, and blob features together with SVM classifiers. Our approach tackles the reduction of the imbalance rate of data and allows the inclusion of domain knowledge as new stages in the cascade. We present a detailed analysis, both in a quantitative and a qualitative way, by providing several measures of performance and the assessment study of interobserver variability. Our system performs at 70% of sensitivity for individual detection, whilst obtaining equivalent patterns to those of the experts for density of contractions.
Address
Corporate Author IEEE Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 0278-0062 ISBN Medium
Area 800 Expedition Conference
Notes MILAB;MV;OR;SIAI Approved no
Call Number BCNPCL @ bcnpcl @ VSD2010; IAM @ iam @ VSI2010 Serial 1281
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Author Fernando Vilariño; Ludmila I. Kuncheva; Petia Radeva
Title ROC curves and video analysis optimization in intestinal capsule endoscopy Type Journal Article
Year 2006 Publication Pattern Recognition Letters Abbreviated Journal PRL
Volume (down) 27 Issue 8 Pages 875–881
Keywords ROC curves; Classification; Classifiers ensemble; Detection of intestinal contractions; Imbalanced classes; Wireless capsule endoscopy
Abstract Wireless capsule endoscopy involves inspection of hours of video material by a highly qualified professional. Time episodes corresponding to intestinal contractions, which are of interest to the physician constitute about 1% of the video. The problem is to label automatically time episodes containing contractions so that only a fraction of the video needs inspection. As the classes of contraction and non-contraction images in the video are largely imbalanced, ROC curves are used to optimize the trade-off between false positive and false negative rates. Classifier ensemble methods and simple classifiers were examined. Our results reinforce the claims from recent literature that classifier ensemble methods specifically designed for imbalanced problems have substantial advantages over simple classifiers and standard classifier ensembles. By using ROC curves with the bagging ensemble method the inspection time can be drastically reduced at the expense of a small fraction of missed contractions.
Address
Corporate Author Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN Medium
Area 800 Expedition Conference
Notes MILAB;MV;SIAI Approved no
Call Number BCNPCL @ bcnpcl @ VKR2006; IAM @ iam @ VKR2006 Serial 647
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Author Santiago Segui; Michal Drozdzal; Fernando Vilariño; Carolina Malagelada; Fernando Azpiroz; Petia Radeva; Jordi Vitria
Title Categorization and Segmentation of Intestinal Content Frames for Wireless Capsule Endoscopy Type Journal Article
Year 2012 Publication IEEE Transactions on Information Technology in Biomedicine Abbreviated Journal TITB
Volume (down) 16 Issue 6 Pages 1341-1352
Keywords
Abstract Wireless capsule endoscopy (WCE) is a device that allows the direct visualization of gastrointestinal tract with minimal discomfort for the patient, but at the price of a large amount of time for screening. In order to reduce this time, several works have proposed to automatically remove all the frames showing intestinal content. These methods label frames as {intestinal content – clear} without discriminating between types of content (with different physiological meaning) or the portion of image covered. In addition, since the presence of intestinal content has been identified as an indicator of intestinal motility, its accurate quantification can show a potential clinical relevance. In this paper, we present a method for the robust detection and segmentation of intestinal content in WCE images, together with its further discrimination between turbid liquid and bubbles. Our proposal is based on a twofold system. First, frames presenting intestinal content are detected by a support vector machine classifier using color and textural information. Second, intestinal content frames are segmented into {turbid, bubbles, and clear} regions. We show a detailed validation using a large dataset. Our system outperforms previous methods and, for the first time, discriminates between turbid from bubbles media.
Address
Corporate Author Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 1089-7771 ISBN Medium
Area 800 Expedition Conference
Notes MILAB; MV; OR;SIAI Approved no
Call Number Admin @ si @ SDV2012 Serial 2124
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Author Fernando Vilariño; Panagiota Spyridonos; Jordi Vitria; Fernando Azpiroz; Petia Radeva
Title Automatic Detection of Intestinal Juices in Wireless Capsule Video Endoscopy Type Conference Article
Year 2006 Publication 18th International Conference on Pattern Recognition Abbreviated Journal
Volume (down) 4 Issue Pages 719-722
Keywords Clinical diagnosis , Endoscopes , Fluids and secretions , Gabor filters , Hospitals , Image sequence analysis , Intestines , Lighting , Shape , Visualization
Abstract Wireless capsule video endoscopy is a novel and challenging clinical technique, whose major reported drawback relates to the high amount of time needed for video visualization. In this paper, we propose a method for the rejection of the parts of the video resulting not valid for analysis by means of automatic detection of intestinal juices. We applied Gabor filters for the characterization of the bubble-like shape of intestinal juices in fasting patients. Our method achieves a significant reduction in visualization time, with no relevant loss of valid frames. The proposed approach is easily extensible to other image analysis scenarios where the described pattern of bubbles can be found.
Address Hong Kong
Corporate Author Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 1051-4651 ISBN 0-7695-2521-0 Medium
Area 800 Expedition Conference ICPR
Notes MV;OR;MILAB;SIAI Approved no
Call Number BCNPCL @ bcnpcl @ VSV2006b; IAM @ iam @ VSV2006g Serial 727
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Author Jorge Bernal; Fernando Vilariño; F. Javier Sanchez
Title Towards Intelligent Systems for Colonoscopy Type Book Chapter
Year 2011 Publication Colonoscopy Abbreviated Journal
Volume (down) 1 Issue Pages 257-282
Keywords
Abstract In this chapter we present tools that can be used to build intelligent systems for colonoscopy.
The idea is, by using methods based on computer vision and artificial intelligence, add significant value to the colonoscopy procedure. Intelligent systems are being used to assist in other medical interventions
Address
Corporate Author Thesis
Publisher Intech Place of Publication Editor Paul Miskovitz
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN 978-953-307-568-6 Medium
Area 800 Expedition Conference
Notes MV;SIAI Approved no
Call Number IAM @ iam @ BVS2011 Serial 1697
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Author Jorge Bernal; F. Javier Sanchez; Fernando Vilariño
Title Depth of Valleys Accumulation Algorithm for Object Detection Type Conference Article
Year 2011 Publication 14th Congrès Català en Intel·ligencia Artificial Abbreviated Journal
Volume (down) 1 Issue 1 Pages 71-80
Keywords Object Recognition, Object Region Identification, Image Analysis, Image Processing
Abstract This work aims at detecting in which regions the objects in the image are by using information about the intensity of valleys, which appear to surround ob- jects in images where the source of light is in the line of direction than the camera. We present our depth of valleys accumulation method, which consists of two stages: first, the definition of the depth of valleys image which combines the output of a ridges and valleys detector with the morphological gradient to measure how deep is a point inside a valley and second, an algorithm that denotes points of the image as interior to objects those which are inside complete or incomplete boundaries in the depth of valleys image. To evaluate the performance of our method we have tested it on several application domains. Our results on object region identification are promising, specially in the field of polyp detection in colonoscopy videos, and we also show its applicability in different areas.
Address Lleida
Corporate Author Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN 978-1-60750-841-0 Medium
Area 800 Expedition Conference CCIA
Notes MV;SIAI Approved no
Call Number IAM @ iam @ BSV2011b Serial 1699
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Author Carles Sanchez; Debora Gil; Antoni Rosell; Albert Andaluz; F. Javier Sanchez
Title Segmentation of Tracheal Rings in Videobronchoscopy combining Geometry and Appearance Type Conference Article
Year 2013 Publication Proceedings of the International Conference on Computer Vision Theory and Applications Abbreviated Journal
Volume (down) 1 Issue Pages 153--161
Keywords Video-bronchoscopy, tracheal ring segmentation, trachea geometric and appearance model
Abstract Videobronchoscopy is a medical imaging technique that allows interactive navigation inside the respiratory pathways and minimal invasive interventions. Tracheal procedures are ordinary interventions that require measurement of the percentage of obstructed pathway for injury (stenosis) assessment. Visual assessment of stenosis in videobronchoscopic sequences requires high expertise of trachea anatomy and is prone to human error. Accurate detection of tracheal rings is the basis for automated estimation of the size of stenosed trachea. Processing of videobronchoscopic images acquired at the operating room is a challenging task due to the wide range of artifacts and acquisition conditions. We present a model of the geometric-appearance of tracheal rings for its detection in videobronchoscopic videos. Experiments on sequences acquired at the operating room, show a performance close to inter-observer variability
Address Barcelona; February 2013
Corporate Author Thesis
Publisher SciTePress Place of Publication Portugal Editor Sebastiano Battiato and José Braz
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title LNCS
Series Volume Series Issue Edition
ISSN ISBN 978-989-8565-47-1 Medium
Area 800 Expedition Conference VISAPP
Notes IAM;MV; 600.044; 600.047; 600.060; 605.203 Approved no
Call Number IAM @ iam @ SGR2013 Serial 2123
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Author Joan M. Nuñez; Jorge Bernal; F. Javier Sanchez; Fernando Vilariño
Title Blood Vessel Characterization in Colonoscopy Images to Improve Polyp Localization Type Conference Article
Year 2013 Publication Proceedings of the International Conference on Computer Vision Theory and Applications Abbreviated Journal
Volume (down) 1 Issue Pages 162-171
Keywords Colonoscopy; Blood vessel; Linear features; Valley detection
Abstract This paper presents an approach to mitigate the contribution of blood vessels to the energy image used at different tasks of automatic colonoscopy image analysis. This goal is achieved by introducing a characterization of endoluminal scene objects which allows us to differentiate between the trace of 2-dimensional visual objects,such as vessels, and shades from 3-dimensional visual objects, such as folds. The proposed characterization is based on the influence that the object shape has in the resulting visual feature, and it leads to the development of a blood vessel attenuation algorithm. A database consisting of manually labelled masks was built in order to test the performance of our method, which shows an encouraging success in blood vessel mitigation while keeping other structures intact. Moreover, by extending our method to the only available polyp localization
algorithm tested on a public database, blood vessel mitigation proved to have a positive influence on the overall performance.
Address Barcelona; February 2013
Corporate Author Thesis
Publisher SciTePress Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN Medium
Area 800 Expedition Conference VISIGRAPP
Notes MV; 600.054; 600.057;SIAI Approved no
Call Number IAM @ iam @ NBS2013 Serial 2198
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Author Fernando Vilariño; Panagiota Spyridonos; Jordi Vitria; Fernando Azpiroz; Petia Radeva
Title Cascade analysis for intestinal contraction detection Type Conference Article
Year 2006 Publication 20th International Congress and exhibition Computer Assisted Radiology and Surgery Abbreviated Journal
Volume (down) Issue Pages 9-10
Keywords intestine video analysis, anisotropic features, support vector machine, cascade of classifiers
Abstract In this work, we address the study of intestinal contractions in a novel approach based on a machine learning framework to process data from Wireless Capsule Video Endoscopy. Wireless endoscopy represents a unique way to visualize the intestine motility by creating long videos to visualize intestine dynamics. In this paper we argue that to analyze huge amount of wireless endoscopy data and define robust methods for contraction detection we should base our approach on sophisticated machine learning techniques. In particular, we propose a cascade of classifiers in order to remove different physiological phenomenon and obtain the motility pattern of small intestines. Our results show obtaining high specificity and sensitivity rates that highlight the high efficiency of the selected approach and support the feasibility of the proposed methodology in the automatic detection and analysis of intestine contractions.
Address Osaka (Japan)
Corporate Author Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN Medium
Area 800 Expedition Conference CARS
Notes MV;OR;MILAB;SIAI Approved no
Call Number BCNPCL @ bcnpcl @ VSV2006a; IAM @ iam @ VSV2006h Serial 726
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Author Fernando Vilariño
Title A Machine Learning Approach for Intestinal Motility Assessment with Capsule Endoscopy Type Book Whole
Year 2006 Publication PhD Thesis, Universitat Autonoma de Barcelona-CVC Abbreviated Journal
Volume (down) Issue Pages
Keywords
Abstract Intestinal motility assessment with video capsule endoscopy arises as a novel and challenging clinical fieldwork. This technique is based on the analysis of the patterns of intestinal contractions obtained by labelling all the motility events present in a video provided by a capsule with a wireless micro-camera, which is ingested by the patient. However, the visual analysis of these video sequences presents several im- portant drawbacks, mainly related to both the large amount of time needed for the visualization process, and the low prevalence of intestinal contractions in video.
In this work we propose a machine learning system to automatically detect the intestinal contractions in video capsule endoscopy, driving a very useful but not fea- sible clinical routine into a feasible clinical procedure. Our proposal is divided into two different parts: The first part tackles the problem of the automatic detection of phasic contractions in capsule endoscopy videos. Phasic contractions are dynamic events spanning about 4-5 seconds, which show visual patterns with a high variability. Our proposal is based on a sequential design which involves the analysis of textural, color and blob features with powerful classifiers such as SVM. This approach appears to cope with two basic aims: the reduction of the imbalance rate of the data set, and the modular construction of the system, which adds the capability of including domain knowledge as new stages in the cascade. The second part of the current work tackles the problem of the automatic detection of tonic contractions. Tonic contrac- tions manifest in capsule endoscopy as a sustained pattern of the folds and wrinkles of the intestine, which may be prolonged for an undetermined span of time. Our proposal is based on the analysis of the wrinkle patterns, presenting a comparative study of diverse features and classification methods, and providing a set of appro- priate descriptors for their characterization. We provide a detailed analysis of the performance achieved by our system both in a qualitative and a quantitative way.
Address CVC (UAB)
Corporate Author Thesis Ph.D. thesis
Publisher Place of Publication Editor Petia Radeva
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue 84-933652-7-0 Edition
ISSN ISBN Medium
Area 800 Expedition Conference
Notes MV;SIAI Approved no
Call Number Admin @ si @ Vil2006; IAM @ iam @ Vil2006 Serial 738
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Author Jorge Bernal; F. Javier Sanchez; Fernando Vilariño
Title Reduction of Pattern Search Area in Colonoscopy Images by Merging Non-Informative Regions Type Conference Article
Year 2010 Publication 28th Congreso Anual de la Sociedad Española de Ingeniería Biomédica Abbreviated Journal
Volume (down) Issue Pages
Keywords
Abstract One of the first usual steps in pattern recognition schemas is image segmentation, in order to reduce the dimensionality of the problem and manage smaller quantity of data. In our case as we are pursuing real-time colon cancer polyp detection, this step is crucial. In this paper we present a non-informative region estimation algorithm that will let us discard some parts of the image where we will not expect to find colon cancer polyps. The performance of our approach will be measured in terms of both non-informative areas elimination and polyps’ areas preserving. The results obtained show the importance of having correct non- informative region estimation in order to fasten the whole recognition process.
Address Madrid (Spain)
Corporate Author Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN Medium
Area 800 Expedition Conference CASEIB
Notes MV;SIAI Approved no
Call Number Admin @ si @ BSV2010 Serial 1469
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Author Jorge Bernal; F. Javier Sanchez; Fernando Vilariño
Title Current Challenges on Polyp Detection in Colonoscopy Videos: From Region Segmentation to Region Classification. a Pattern Recognition-based Approach.ased Approach Type Conference Article
Year 2011 Publication 2nd International Workshop on Medical Image Analysis and Descriptionfor Diagnosis Systems Abbreviated Journal
Volume (down) Issue Pages 62-71
Keywords Medical Imaging, Colonoscopy, Pattern Recognition, Segmentation, Polyp Detection, Region Description, Machine Learning, Real-time.
Abstract In this paper we present our approach on real-time polyp detection in colonoscopy videos. Our method consists of three stages: Image Segmentation, Region Description and Image Classification. Taking into account the constraints of our project, we introduce our segmentation system that is based on the model of appearance of the polyp that we have defined after observing real videos from colonoscopy processes. The output of this stage will ideally be a low number of regions of which one of them should cover the whole polyp region (if there is one in the image). This regions will be described in terms of features and, as a result of a machine learning schema, classified based on the values that they have for the several features that we will use on their description. Although we are still on the early stages of the project, we present some preliminary segmentation results that indicates that we are going in a good direction.
Address Rome, Italy
Corporate Author Thesis
Publisher SciTePress Place of Publication Editor Djemal, Khalifa
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN Medium
Area 800 Expedition Conference MIAD
Notes MV;SIAI Approved no
Call Number IAM @ iam @ BSV2011a Serial 1695
Permanent link to this record
 

 
Author Fernando Vilariño; Panagiota Spyridonos; Petia Radeva; Jordi Vitria; Fernando Azpiroz; Juan Malagelada
Title Method for automatic classification of in vivo images Type Patent
Year 2010 Publication US 2010/0046816 Abbreviated Journal
Volume (down) Issue Pages
Keywords
Abstract A method for automatically detecting a post-duodenal boundary in an image stream of the gastrointestinal (GI) tract. The image stream is sampled to obtain a reduced set of images for processing. The reduced set of images is filtered to remove non-valid frames or non-valid portions of frames, thereby generating a filtered set of valid images. A polar representation of the valid images is generated. Textural features of the polar representation are processed to detect the post-duodenal boundary of the GI tract.
Address
Corporate Author Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN Medium
Area 800 Expedition Conference
Notes MV;OR;MILAB;SIAI Approved no
Call Number IAM @ iam @ VSR2010 Serial 1702
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Author Gerard Lacey; Fernando Vilariño
Title Endoscopy system with motion sensors Type Patent
Year 2011 Publication US 2011/0032347 A1 Abbreviated Journal
Volume (down) Issue Pages
Keywords
Abstract An endoscopy system (1) comprises an endoscope (2) with a camera (3) at its tip. The endoscope extends through an endoscope guide (4) for guiding movement of the endoscope and for measurement of its movement as it enters the body. The guide (4) comprises a generally conical body (5) having a through passage (105) through which the endoscope (2) extends. A motion sensor comprises an optical transmitter (7) and a detector (8) mounted alongside the passage (105) to measure the insertion-withdrawal linear motion and also rotation of the endoscope by the endoscopist's hand. The system (1) also comprises a flexure controller (10) having wheels operated by the endoscopist. The camera (3), the motion sensor (7/8), and the flexure controller (10) are all connected to a processor (11) which feeds a display.
Address Jacobson Holman PPLC; 400 Seventh Street, N.W. Suite 600; Whashington DC 20004 DC
Corporate Author USPTO Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN Medium
Area 800 Expedition Conference
Notes MV;SIAI Approved no
Call Number IAM @ iam @ LaV2011 Serial 1703
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