Giuseppe Pezzano, Oliver Diaz, Vicent Ribas Ripoll, & Petia Radeva. (2021). CoLe-CNN+: Context learning – Convolutional neural network for COVID-19-Ground-Glass-Opacities detection and segmentation. CBM - Computers in Biology and Medicine, 136, 104689.
Abstract: The most common tool for population-wide COVID-19 identification is the Reverse Transcription-Polymerase Chain Reaction test that detects the presence of the virus in the throat (or sputum) in swab samples. This test has a sensitivity between 59% and 71%. However, this test does not provide precise information regarding the extension of the pulmonary infection. Moreover, it has been proven that through the reading of a computed tomography (CT) scan, a clinician can provide a more complete perspective of the severity of the disease. Therefore, we propose a comprehensive system for fully-automated COVID-19 detection and lesion segmentation from CT scans, powered by deep learning strategies to support decision-making process for the diagnosis of COVID-19.
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David Rotger, Misael Rosales, Jaume Garcia, Oriol Pujol, J. Mauri, & Petia Radeva. (2003). Active Vessel: A New Multimedia Workstation for Intravascular Ultrasound and Angiography Fusion. Computers in Cardiology, 30, 65–68.
Abstract: AcriveVessel is a new multimedia workstation which enables the visualization, acquisition and handling of both image modalities, on- and ofline. It enables DICOM v3.0 decompression and browsing, video acquisition,repmduction and storage for IntraVascular UltraSound (IVUS) and angiograms with their corresponding ECG,automatic catheter segmentation in angiography images (using fast marching algorithm). BSpline models definition for vessel layers on IVUS images sequence and an extensively validated tool to fuse information. This approach defines the correspondence of every IVUS image with its correspondent point in the angiogram and viceversa. The 3 0 reconstruction of the NUS catheterhessel enables real distance measurements as well as threedimensional visualization showing vessel tortuosity in the space.
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Miguel Reyes, Albert Clapes, Jose Ramirez, Juan R Revilla, & Sergio Escalera. (2013). Automatic Digital Biometry Analysis based on Depth Maps. COMPUTIND - Computers in Industry, 64(9), 1316–1325.
Abstract: World Health Organization estimates that 80% of the world population is affected by back-related disorders during his life. Current practices to analyze musculo-skeletal disorders (MSDs) are expensive, subjective, and invasive. In this work, we propose a tool for static body posture analysis and dynamic range of movement estimation of the skeleton joints based on 3D anthropometric information from multi-modal data. Given a set of keypoints, RGB and depth data are aligned, depth surface is reconstructed, keypoints are matched, and accurate measurements about posture and spinal curvature are computed. Given a set of joints, range of movement measurements is also obtained. Moreover, gesture recognition based on joint movements is performed to look for the correctness in the development of physical exercises. The system shows high precision and reliable measurements, being useful for posture reeducation purposes to prevent MSDs, as well as tracking the posture evolution of patients in rehabilitation treatments.
Keywords: Multi-modal data fusion; Depth maps; Posture analysis; Anthropometric data; Musculo-skeletal disorders; Gesture analysis
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Joan Serrat, Felipe Lumbreras, & Antonio Lopez. (2013). Cost estimation of custom hoses from STL files and CAD drawings. COMPUTIND - Computers in Industry, 64(3), 299–309.
Abstract: We present a method for the cost estimation of custom hoses from CAD models. They can come in two formats, which are easy to generate: a STL file or the image of a CAD drawing showing several orthogonal projections. The challenges in either cases are, first, to obtain from them a high level 3D description of the shape, and second, to learn a regression function for the prediction of the manufacturing time, based on geometric features of the reconstructed shape. The chosen description is the 3D line along the medial axis of the tube and the diameter of the circular sections along it. In order to extract it from STL files, we have adapted RANSAC, a robust parametric fitting algorithm. As for CAD drawing images, we propose a new technique for 3D reconstruction from data entered on any number of orthogonal projections. The regression function is a Gaussian process, which does not constrain the function to adopt any specific form and is governed by just two parameters. We assess the accuracy of the manufacturing time estimation by k-fold cross validation on 171 STL file models for which the time is provided by an expert. The results show the feasibility of the method, whereby the relative error for 80% of the testing samples is below 15%.
Keywords: On-line quotation; STL format; Regression; Gaussian process
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Juan Jose Rubio, Takahiro Kashiwa, Teera Laiteerapong, Wenlong Deng, Kohei Nagai, Sergio Escalera, et al. (2019). Multi-class structural damage segmentation using fully convolutional networks. COMPUTIND - Computers in Industry, 112, 103121.
Abstract: Structural Health Monitoring (SHM) has benefited from computer vision and more recently, Deep Learning approaches, to accurately estimate the state of deterioration of infrastructure. In our work, we test Fully Convolutional Networks (FCNs) with a dataset of deck areas of bridges for damage segmentation. We create a dataset for delamination and rebar exposure that has been collected from inspection records of bridges in Niigata Prefecture, Japan. The dataset consists of 734 images with three labels per image, which makes it the largest dataset of images of bridge deck damage. This data allows us to estimate the performance of our method based on regions of agreement, which emulates the uncertainty of in-field inspections. We demonstrate the practicality of FCNs to perform automated semantic segmentation of surface damages. Our model achieves a mean accuracy of 89.7% for delamination and 78.4% for rebar exposure, and a weighted F1 score of 81.9%.
Keywords: Bridge damage detection; Deep learning; Semantic segmentation
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Beata Megyesi, Bernhard Esslinger, Alicia Fornes, Nils Kopal, Benedek Lang, George Lasry, et al. (2020). Decryption of historical manuscripts: the DECRYPT project. CRYPT - Cryptologia, 44(6), 545–559.
Abstract: Many historians and linguists are working individually and in an uncoordinated fashion on the identification and decryption of historical ciphers. This is a time-consuming process as they often work without access to automatic methods and processes that can accelerate the decipherment. At the same time, computer scientists and cryptologists are developing algorithms to decrypt various cipher types without having access to a large number of original ciphertexts. In this paper, we describe the DECRYPT project aiming at the creation of resources and tools for historical cryptology by bringing the expertise of various disciplines together for collecting data, exchanging methods for faster progress to transcribe, decrypt and contextualize historical encrypted manuscripts. We present our goals and work-in progress of a general approach for analyzing historical encrypted manuscripts using standardized methods and a new set of state-of-the-art tools. We release the data and tools as open-source hoping that all mentioned disciplines would benefit and contribute to the research infrastructure of historical cryptology.
Keywords: automatic decryption; cipher collection; historical cryptology; image transcription
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Kaida Xiao, Chenyang Fu, Dimosthenis Karatzas, & Sophie Wuerger. (2011). Visual Gamma Correction for LCD Displays. DIS - Displays, 32(1), 17–23.
Abstract: An improved method for visual gamma correction is developed for LCD displays to increase the accuracy of digital colour reproduction. Rather than utilising a photometric measurement device, we use observ- ers’ visual luminance judgements for gamma correction. Eight half tone patterns were designed to gen- erate relative luminances from 1/9 to 8/9 for each colour channel. A psychophysical experiment was conducted on an LCD display to find the digital signals corresponding to each relative luminance by visually matching the half-tone background to a uniform colour patch. Both inter- and intra-observer vari- ability for the eight luminance matches in each channel were assessed and the luminance matches proved to be consistent across observers (DE00 < 3.5) and repeatable (DE00 < 2.2). Based on the individual observer judgements, the display opto-electronic transfer function (OETF) was estimated by using either a 3rd order polynomial regression or linear interpolation for each colour channel. The performance of the proposed method is evaluated by predicting the CIE tristimulus values of a set of coloured patches (using the observer-based OETFs) and comparing them to the expected CIE tristimulus values (using the OETF obtained from spectro-radiometric luminance measurements). The resulting colour differences range from 2 to 4.6 DE00. We conclude that this observer-based method of visual gamma correction is useful to estimate the OETF for LCD displays. Its major advantage is that no particular functional relationship between digital inputs and luminance outputs has to be assumed.
Keywords: Display calibration; Psychophysics ; Perceptual; Visual gamma correction; Luminance matching; Observer-based calibration
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C. Alejandro Parraga, Jordi Roca, Dimosthenis Karatzas, & Sophie Wuerger. (2014). Limitations of visual gamma corrections in LCD displays. Dis - Displays, 35(5), 227–239.
Abstract: A method for estimating the non-linear gamma transfer function of liquid–crystal displays (LCDs) without the need of a photometric measurement device was described by Xiao et al. (2011) [1]. It relies on observer’s judgments of visual luminance by presenting eight half-tone patterns with luminances from 1/9 to 8/9 of the maximum value of each colour channel. These half-tone patterns were distributed over the screen both over the vertical and horizontal viewing axes. We conducted a series of photometric and psychophysical measurements (consisting in the simultaneous presentation of half-tone patterns in each trial) to evaluate whether the angular dependency of the light generated by three different LCD technologies would bias the results of these gamma transfer function estimations. Our results show that there are significant differences between the gamma transfer functions measured and produced by observers at different viewing angles. We suggest appropriate modifications to the Xiao et al. paradigm to counterbalance these artefacts which also have the advantage of shortening the amount of time spent in collecting the psychophysical measurements.
Keywords: Display calibration; Psychophysics; Perceptual; Visual gamma correction; Luminance matching; Observer-based calibration
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David Roche, Debora Gil, & Jesus Giraldo. (2013). Multiple active receptor conformation, agonist efficacy and maximum effect of the system: the conformation-based operational model of agonism,. DDT - Drug Discovery Today, 18(7-8), 365–371.
Abstract: The operational model of agonism assumes that the maximum effect a particular receptor system can achieve (the Em parameter) is fixed. Em estimates are above but close to the asymptotic maximum effects of endogenous agonists. The concept of Em is contradicted by superagonists and those positive allosteric modulators that significantly increase the maximum effect of endogenous agonists. An extension of the operational model is proposed that assumes that the Em parameter does not necessarily have a single value for a receptor system but has multiple values associated to multiple active receptor conformations. The model provides a mechanistic link between active receptor conformation and agonist efficacy, which can be useful for the analysis of agonist response under different receptor scenarios.
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Sonia Baeza, Debora Gil, I.Garcia Olive, M.Salcedo, J.Deportos, Carles Sanchez, et al. (2022). A novel intelligent radiomic analysis of perfusion SPECT/CT images to optimize pulmonary embolism diagnosis in COVID-19 patients. EJNMMI-PHYS - EJNMMI Physics, 9(1, Article 84), 1–17.
Abstract: Background: COVID-19 infection, especially in cases with pneumonia, is associated with a high rate of pulmonary embolism (PE). In patients with contraindications for CT pulmonary angiography (CTPA) or non-diagnostic CTPA, perfusion single-photon emission computed tomography/computed tomography (Q-SPECT/CT) is a diagnostic alternative. The goal of this study is to develop a radiomic diagnostic system to detect PE based only on the analysis of Q-SPECT/CT scans.
Methods: This radiomic diagnostic system is based on a local analysis of Q-SPECT/CT volumes that includes both CT and Q-SPECT values for each volume point. We present a combined approach that uses radiomic features extracted from each scan as input into a fully connected classifcation neural network that optimizes a weighted crossentropy loss trained to discriminate between three diferent types of image patterns (pixel sample level): healthy lungs (control group), PE and pneumonia. Four types of models using diferent confguration of parameters were tested.
Results: The proposed radiomic diagnostic system was trained on 20 patients (4,927 sets of samples of three types of image patterns) and validated in a group of 39 patients (4,410 sets of samples of three types of image patterns). In the training group, COVID-19 infection corresponded to 45% of the cases and 51.28% in the test group. In the test group, the best model for determining diferent types of image patterns with PE presented a sensitivity, specifcity, positive predictive value and negative predictive value of 75.1%, 98.2%, 88.9% and 95.4%, respectively. The best model for detecting
pneumonia presented a sensitivity, specifcity, positive predictive value and negative predictive value of 94.1%, 93.6%, 85.2% and 97.6%, respectively. The area under the curve (AUC) was 0.92 for PE and 0.91 for pneumonia. When the results obtained at the pixel sample level are aggregated into regions of interest, the sensitivity of the PE increases to 85%, and all metrics improve for pneumonia.
Conclusion: This radiomic diagnostic system was able to identify the diferent lung imaging patterns and is a frst step toward a comprehensive intelligent radiomic system to optimize the diagnosis of PE by Q-SPECT/CT.
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Carme Julia, Angel Sappa, Felipe Lumbreras, Joan Serrat, & Antonio Lopez. (2008). Rank Estimation in 3D Multibody Motion Segmentation. Electronic Letters, 44(4), 279–280.
Abstract: A novel technique for rank estimation in 3D multibody motion segmentation is proposed. It is based on the study of the frequency spectra of moving rigid objects and does not use or assume a prior knowledge of the objects contained in the scene (i.e. number of objects and motion). The significance of rank estimation on multibody motion segmentation results is shown by using two motion segmentation algorithms over both synthetic and real data.
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Andres Traumann, Gholamreza Anbarjafari, & Sergio Escalera. (2015). Accurate 3D Measurement Using Optical Depth Information. EL - Electronic Letters, 51(18), 1420–1422.
Abstract: A novel three-dimensional measurement technique is proposed. The methodology consists in mapping from the screen coordinates reported by the optical camera to the real world, and integrating distance gradients from the beginning to the end point, while also minimising the error through fitting pixel locations to a smooth curve. The results demonstrate accuracy of less than half a centimetre using Microsoft Kinect II.
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Jorge Bernal. (2014). Polyp Localization and Segmentation in Colonoscopy Images by Means of a Model of Appearance for Polyps. ELCVIA - Electronic Letters on Computer Vision and Image Analysis, 13(2), 9–10.
Abstract: Colorectal cancer is the fourth most common cause of cancer death worldwide and its survival rate depends on the stage in which it is detected on hence the necessity for an early colon screening. There are several screening techniques but colonoscopy is still nowadays the gold standard, although it has some drawbacks such as the miss rate. Our contribution, in the field of intelligent systems for colonoscopy, aims at providing a polyp localization and a polyp segmentation system based on a model of appearance for polyps. To develop both methods we define a model of appearance for polyps, which describes a polyp as enclosed by intensity valleys. The novelty of our contribution resides on the fact that we include in our model aspects of the image formation and we also consider the presence of other elements from the endoluminal scene such as specular highlights and blood vessels, which have an impact on the performance of our methods. In order to develop our polyp localization method we accumulate valley information in order to generate energy maps, which are also used to guide the polyp segmentation. Our methods achieve promising results in polyp localization and segmentation. As we want to explore the usability of our methods we present a comparative analysis between physicians fixations obtained via an eye tracking device and our polyp localization method. The results show that our method is indistinguishable to novice physicians although it is far from expert physicians.
Keywords: Colonoscopy; polyp localization; polyp segmentation; Eye-tracking
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Ariel Amato. (2014). Moving cast shadow detection. ELCVIA - Electronic letters on computer vision and image analysis, 13(2), 70–71.
Abstract: Motion perception is an amazing innate ability of the creatures on the planet. This adroitness entails a functional advantage that enables species to compete better in the wild. The motion perception ability is usually employed at different levels, allowing from the simplest interaction with the ’physis’ up to the most transcendental survival tasks. Among the five classical perception system , vision is the most widely used in the motion perception field. Millions years of evolution have led to a highly specialized visual system in humans, which is characterized by a tremendous accuracy as well as an extraordinary robustness. Although humans and an immense diversity of species can distinguish moving object with a seeming simplicity, it has proven to be a difficult and non trivial problem from a computational perspective. In the field of Computer Vision, the detection of moving objects is a challenging and fundamental research area. This can be referred to as the ’origin’ of vast and numerous vision-based research sub-areas. Nevertheless, from the bottom to the top of this hierarchical analysis, the foundations still relies on when and where motion has occurred in an image. Pixels corresponding to moving objects in image sequences can be identified by measuring changes in their values. However, a pixel’s value (representing a combination of color and brightness) could also vary due to other factors such as: variation in scene illumination, camera noise and nonlinear sensor responses among others. The challenge lies in detecting if the changes in pixels’ value are caused by a genuine object movement or not. An additional challenging aspect in motion detection is represented by moving cast shadows. The paradox arises because a moving object and its cast shadow share similar motion patterns. However, a moving cast shadow is not a moving object. In fact, a shadow represents a photometric illumination effect caused by the relative position of the object with respect to the light sources. Shadow detection methods are mainly divided in two domains depending on the application field. One normally consists of static images where shadows are casted by static objects, whereas the second one is referred to image sequences where shadows are casted by moving objects. For the first case, shadows can provide additional geometric and semantic cues about shape and position of its casting object as well as the localization of the light source. Although the previous information can be extracted from static images as well as video sequences, the main focus in the second area is usually change detection, scene matching or surveillance. In this context, a shadow can severely affect with the analysis and interpretation of the scene. The work done in the thesis is focused on the second case, thus it addresses the problem of detection and removal of moving cast shadows in video sequences in order to enhance the detection of moving object.
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Dorota Kaminska, Kadir Aktas, Davit Rizhinashvili, Danila Kuklyanov, Abdallah Hussein Sham, Sergio Escalera, et al. (2021). Two-stage Recognition and Beyond for Compound Facial Emotion Recognition. ELEC - Electronics, 10(22), 2847.
Abstract: Facial emotion recognition is an inherently complex problem due to individual diversity in facial features and racial and cultural differences. Moreover, facial expressions typically reflect the mixture of people’s emotional statuses, which can be expressed using compound emotions. Compound facial emotion recognition makes the problem even more difficult because the discrimination between dominant and complementary emotions is usually weak. We have created a database that includes 31,250 facial images with different emotions of 115 subjects whose gender distribution is almost uniform to address compound emotion recognition. In addition, we have organized a competition based on the proposed dataset, held at FG workshop 2020. This paper analyzes the winner’s approach—a two-stage recognition method (1st stage, coarse recognition; 2nd stage, fine recognition), which enhances the classification of symmetrical emotion labels.
Keywords: compound emotion recognition; facial expression recognition; dominant and complementary emotion recognition; deep learning
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