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	Author	Carles Sanchez; Jorge Bernal; F. Javier Sanchez; Antoni Rosell; Marta Diez-Ferrer; Debora Gil
	Title	Towards On-line Quantification of Tracheal Stenosis from Videobronchoscopy			Type	Journal Article
	Year	2015	Publication	International Journal of Computer Assisted Radiology and Surgery	Abbreviated Journal	IJCAR
	Volume	10	Issue	6	Pages	935-945
	Keywords
	Abstract
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	IAM; MV; 600.075			Approved	no
	Call Number	Admin @ si @ SBS2015a			Serial	2611
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	Author	Debora Gil; Ruth Aris; Agnes Borras; Esmitt Ramirez; Rafael Sebastian; Mariano Vazquez
	Title	Influence of fiber connectivity in simulations of cardiac biomechanics			Type	Journal Article
	Year	2019	Publication	International Journal of Computer Assisted Radiology and Surgery	Abbreviated Journal	IJCAR
	Volume	14	Issue	1	Pages	63–72
	Keywords	Cardiac electromechanical simulations; Diffusion tensor imaging; Fiber connectivity
	Abstract	PURPOSE: Personalized computational simulations of the heart could open up new improved approaches to diagnosis and surgery assistance systems. While it is fully recognized that myocardial fiber orientation is central for the construction of realistic computational models of cardiac electromechanics, the role of its overall architecture and connectivity remains unclear. Morphological studies show that the distribution of cardiac muscular fibers at the basal ring connects epicardium and endocardium. However, computational models simplify their distribution and disregard the basal loop. This work explores the influence in computational simulations of fiber distribution at different short-axis cuts. METHODS: We have used a highly parallelized computational solver to test different fiber models of ventricular muscular connectivity. We have considered two rule-based mathematical models and an own-designed method preserving basal connectivity as observed in experimental data. Simulated cardiac functional scores (rotation, torsion and longitudinal shortening) were compared to experimental healthy ranges using generalized models (rotation) and Mahalanobis distances (shortening, torsion). RESULTS: The probability of rotation was significantly lower for ruled-based models [95% CI (0.13, 0.20)] in comparison with experimental data [95% CI (0.23, 0.31)]. The Mahalanobis distance for experimental data was in the edge of the region enclosing 99% of the healthy population. CONCLUSIONS: Cardiac electromechanical simulations of the heart with fibers extracted from experimental data produce functional scores closer to healthy ranges than rule-based models disregarding architecture connectivity.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	IAM; 600.096; 601.323; 600.139; 600.145			Approved	no
	Call Number	Admin @ si @ GAB2019a			Serial	3133
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	Author	Jorge Bernal; Aymeric Histace; Marc Masana; Quentin Angermann; Cristina Sanchez Montes; Cristina Rodriguez de Miguel; Maroua Hammami; Ana Garcia Rodriguez; Henry Cordova; Olivier Romain; Gloria Fernandez Esparrach; Xavier Dray; F. Javier Sanchez
	Title	GTCreator: a flexible annotation tool for image-based datasets			Type	Journal Article
	Year	2019	Publication	International Journal of Computer Assisted Radiology and Surgery	Abbreviated Journal	IJCAR
	Volume	14	Issue	2	Pages	191–201
	Keywords	Annotation tool; Validation Framework; Benchmark; Colonoscopy; Evaluation
	Abstract	Abstract Purpose: Methodology evaluation for decision support systems for health is a time consuming-task. To assess performance of polyp detection methods in colonoscopy videos, clinicians have to deal with the annotation of thousands of images. Current existing tools could be improved in terms of exibility and ease of use. Methods:We introduce GTCreator, a exible annotation tool for providing image and text annotations to image-based datasets. It keeps the main basic functionalities of other similar tools while extending other capabilities such as allowing multiple annotators to work simultaneously on the same task or enhanced dataset browsing and easy annotation transfer aiming to speed up annotation processes in large datasets. Results: The comparison with other similar tools shows that GTCreator allows to obtain fast and precise annotation of image datasets, being the only one which offers full annotation editing and browsing capabilites. Conclusions: Our proposed annotation tool has been proven to be efficient for large image dataset annota- tion, as well as showing potential of use in other stages of method evaluation such as experimental setup or results analysis.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	MV; 600.096; 600.109; 600.119; 601.305			Approved	no
	Call Number	Admin @ si @ BHM2019			Serial	3163
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	Author	Debora Gil; Antonio Esteban Lansaque; Agnes Borras; Carles Sanchez
	Title	Enhancing virtual bronchoscopy with intra-operative data using a multi-objective GAN			Type	Journal Article
	Year	2019	Publication	International Journal of Computer Assisted Radiology and Surgery	Abbreviated Journal	IJCAR
	Volume	7	Issue	1	Pages
	Keywords
	Abstract	This manuscript has been withdrawn by bioRxiv due to upload of an incorrect version of the manuscript by the authors. Therefore, this manuscript should not be cited as reference for this project.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	IAM; 600.139; 600.145			Approved	no
	Call Number	Admin @ si @ GEB2019			Serial	3307
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	Author	Guillermo Torres; Debora Gil
	Title	A multi-shape loss function with adaptive class balancing for the segmentation of lung structures			Type	Journal Article
	Year	2020	Publication	International Journal of Computer Assisted Radiology and Surgery	Abbreviated Journal	IJCAR
	Volume	15	Issue	1	Pages	S154-55
	Keywords
	Abstract
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	IAM			Approved	no
	Call Number	Admin @ si @ ToG2020			Serial	3590
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	Author	Guillermo Torres; Debora Gil; Antoni Rosell; S. Mena; Carles Sanchez
	Title	Virtual Radiomics Biopsy for the Histological Diagnosis of Pulmonary Nodules – Intermediate Results of the RadioLung Project			Type	Journal Article
	Year	2023	Publication	International Journal of Computer Assisted Radiology and Surgery	Abbreviated Journal	IJCARS
	Volume		Issue		Pages
	Keywords
	Abstract
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	IAM			Approved	no
	Call Number	Admin @ si @ TGM2023			Serial	3830
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	Author	Juan Borrego-Carazo; Carles Sanchez; David Castells; Jordi Carrabina; Debora Gil
	Title	A benchmark for the evaluation of computational methods for bronchoscopic navigation			Type	Journal Article
	Year	2022	Publication	International Journal of Computer Assisted Radiology and Surgery	Abbreviated Journal	IJCARS
	Volume	17	Issue	1	Pages
	Keywords
	Abstract
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	IAM			Approved	no
	Call Number	Admin @ si @ BSC2022			Serial	3832
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	Author	Arjan Gijsenij; Theo Gevers; Joost Van de Weijer
	Title	Generalized Gamut Mapping using Image Derivative Structures for Color Constancy			Type	Journal Article
	Year	2010	Publication	International Journal of Computer Vision	Abbreviated Journal	IJCV
	Volume	86	Issue	2-3	Pages	127-139
	Keywords
	Abstract	The gamut mapping algorithm is one of the most promising methods to achieve computational color constancy. However, so far, gamut mapping algorithms are restricted to the use of pixel values to estimate the illuminant. Therefore, in this paper, gamut mapping is extended to incorporate the statistical nature of images. It is analytically shown that the proposed gamut mapping framework is able to include any linear filter output. The main focus is on the local n-jet describing the derivative structure of an image. It is shown that derivatives have the advantage over pixel values to be invariant to disturbing effects (i.e. deviations of the diagonal model) such as saturated colors and diffuse light. Further, as the n-jet based gamut mapping has the ability to use more information than pixel values alone, the combination of these algorithms are more stable than the regular gamut mapping algorithm. Different methods of combining are proposed. Based on theoretical and experimental results conducted on large scale data sets of hyperspectral, laboratory and realworld scenes, it can be derived that (1) in case of deviations of the diagonal model, the derivative-based approach outperforms the pixel-based gamut mapping, (2) state-of-the-art algorithms are outperformed by the n-jet based gamut mapping, (3) the combination of the different n-jet based gamut
	Address
	Corporate Author				Thesis
	Publisher	Kluwer Academic Publishers Hingham, MA, USA	Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN	0920-5691	ISBN		Medium
	Area		Expedition		Conference
	Notes	ISE			Approved	no
	Call Number	CAT @ cat @ GGW2010			Serial	1274
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	Author	Jose Manuel Alvarez; Theo Gevers; Antonio Lopez
	Title	Learning photometric invariance for object detection			Type	Journal Article
	Year	2010	Publication	International Journal of Computer Vision	Abbreviated Journal	IJCV
	Volume	90	Issue	1	Pages	45-61
	Keywords	road detection
	Abstract	Impact factor: 3.508 (the last available from JCR2009SCI). Position 4/103 in the category Computer Science, Artificial Intelligence. Quartile Color is a powerful visual cue in many computer vision applications such as image segmentation and object recognition. However, most of the existing color models depend on the imaging conditions that negatively affect the performance of the task at hand. Often, a reflection model (e.g., Lambertian or dichromatic reflectance) is used to derive color invariant models. However, this approach may be too restricted to model real-world scenes in which different reflectance mechanisms can hold simultaneously. Therefore, in this paper, we aim to derive color invariance by learning from color models to obtain diversified color invariant ensembles. First, a photometrical orthogonal and non-redundant color model set is computed composed of both color variants and invariants. Then, the proposed method combines these color models to arrive at a diversified color ensemble yielding a proper balance between invariance (repeatability) and discriminative power (distinctiveness). To achieve this, our fusion method uses a multi-view approach to minimize the estimation error. In this way, the proposed method is robust to data uncertainty and produces properly diversified color invariant ensembles. Further, the proposed method is extended to deal with temporal data by predicting the evolution of observations over time. Experiments are conducted on three different image datasets to validate the proposed method. Both the theoretical and experimental results show that the method is robust against severe variations in imaging conditions. The method is not restricted to a certain reflection model or parameter tuning, and outperforms state-of-the-art detection techniques in the field of object, skin and road recognition. Considering sequential data, the proposed method (extended to deal with future observations) outperforms the other methods
	Address
	Corporate Author				Thesis
	Publisher	Springer US	Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN	0920-5691	ISBN		Medium
	Area		Expedition		Conference
	Notes	ADAS;ISE			Approved	no
	Call Number	ADAS @ adas @ AGL2010c			Serial	1451
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	Author	Jasper Uilings; Koen E.A. van de Sande; Theo Gevers; Arnold Smeulders
	Title	Selective Search for Object Recognition			Type	Journal Article
	Year	2013	Publication	International Journal of Computer Vision	Abbreviated Journal	IJCV
	Volume	104	Issue	2	Pages	154-171
	Keywords
	Abstract	This paper addresses the problem of generating possible object locations for use in object recognition. We introduce selective search which combines the strength of both an exhaustive search and segmentation. Like segmentation, we use the image structure to guide our sampling process. Like exhaustive search, we aim to capture all possible object locations. Instead of a single technique to generate possible object locations, we diversify our search and use a variety of complementary image partitionings to deal with as many image conditions as possible. Our selective search results in a small set of data-driven, class-independent, high quality locations, yielding 99 % recall and a Mean Average Best Overlap of 0.879 at 10,097 locations. The reduced number of locations compared to an exhaustive search enables the use of stronger machine learning techniques and stronger appearance models for object recognition. In this paper we show that our selective search enables the use of the powerful Bag-of-Words model for recognition. The selective search software is made publicly available (Software: http://disi.unitn.it/~uijlings/SelectiveSearch.html).
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN	0920-5691	ISBN		Medium
	Area		Expedition		Conference
	Notes	ALTRES;ISE			Approved	no
	Call Number	Admin @ si @ USG2013			Serial	2362
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	Author	Xavier Boix; Josep M. Gonfaus; Joost Van de Weijer; Andrew Bagdanov; Joan Serrat; Jordi Gonzalez
	Title	Harmony Potentials: Fusing Global and Local Scale for Semantic Image Segmentation			Type	Journal Article
	Year	2012	Publication	International Journal of Computer Vision	Abbreviated Journal	IJCV
	Volume	96	Issue	1	Pages	83-102
	Keywords
	Abstract	The Hierarchical Conditional Random Field(HCRF) model have been successfully applied to a number of image labeling problems, including image segmentation. However, existing HCRF models of image segmentation do not allow multiple classes to be assigned to a single region, which limits their ability to incorporate contextual information across multiple scales. At higher scales in the image, this representation yields an oversimplied model since multiple classes can be reasonably expected to appear within large regions. This simplied model particularly limits the impact of information at higher scales. Since class-label information at these scales is usually more reliable than at lower, noisier scales, neglecting this information is undesirable. To address these issues, we propose a new consistency potential for image labeling problems, which we call the harmony potential. It can encode any possible combi- nation of labels, penalizing only unlikely combinations of classes. We also propose an eective sampling strategy over this expanded label set that renders tractable the underlying optimization problem. Our approach obtains state-of-the-art results on two challenging, standard benchmark datasets for semantic image segmentation: PASCAL VOC 2010, and MSRC-21.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN	0920-5691	ISBN		Medium
	Area		Expedition		Conference
	Notes	ISE;CIC;ADAS			Approved	no
	Call Number	Admin @ si @ BGW2012			Serial	1718
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	Author	R. Valenti; N. Sebe; Theo Gevers
	Title	What are you looking at? Improving Visual gaze Estimation by Saliency			Type	Journal Article
	Year	2012	Publication	International Journal of Computer Vision	Abbreviated Journal	IJCV
	Volume	98	Issue	3	Pages	324-334
	Keywords
	Abstract	Impact factor 2010: 5.15 Impact factor 2011/12?: 5.36 In this paper we present a novel mechanism to obtain enhanced gaze estimation for subjects looking at a scene or an image. The system makes use of prior knowledge about the scene (e.g. an image on a computer screen), to define a probability map of the scene the subject is gazing at, in order to find the most probable location. The proposed system helps in correcting the fixations which are erroneously estimated by the gaze estimation device by employing a saliency framework to adjust the resulting gaze point vector. The system is tested on three scenarios: using eye tracking data, enhancing a low accuracy webcam based eye tracker, and using a head pose tracker. The correlation between the subjects in the commercial eye tracking data is improved by an average of 13.91%. The correlation on the low accuracy eye gaze tracker is improved by 59.85%, and for the head pose tracker we obtain an improvement of 10.23%. These results show the potential of the system as a way to enhance and self-calibrate different visual gaze estimation systems.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN	0920-5691	ISBN		Medium
	Area		Expedition		Conference
	Notes	ALTRES;ISE			Approved	no
	Call Number	Admin @ si @ VSG2012			Serial	1848
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	Author	Fahad Shahbaz Khan; Joost Van de Weijer; Maria Vanrell
	Title	Modulating Shape Features by Color Attention for Object Recognition			Type	Journal Article
	Year	2012	Publication	International Journal of Computer Vision	Abbreviated Journal	IJCV
	Volume	98	Issue	1	Pages	49-64
	Keywords
	Abstract	Bag-of-words based image representation is a successful approach for object recognition. Generally, the subsequent stages of the process: feature detection,feature description, vocabulary construction and image representation are performed independent of the intentioned object classes to be detected. In such a framework, it was found that the combination of different image cues, such as shape and color, often obtains below expected results. This paper presents a novel method for recognizing object categories when using ultiple cues by separately processing the shape and color cues and combining them by modulating the shape features by category specific color attention. Color is used to compute bottom up and top-down attention maps. Subsequently, these color attention maps are used to modulate the weights of the shape features. In regions with higher attention shape features are given more weight than in regions with low attention. We compare our approach with existing methods that combine color and shape cues on five data sets containing varied importance of both cues, namely, Soccer (color predominance), Flower (color and hape parity), PASCAL VOC 2007 and 2009 (shape predominance) and Caltech-101 (color co-interference). The experiments clearly demonstrate that in all five data sets our proposed framework significantly outperforms existing methods for combining color and shape information.
	Address
	Corporate Author				Thesis
	Publisher	Springer Netherlands	Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN	0920-5691	ISBN		Medium
	Area		Expedition		Conference
	Notes	CIC			Approved	no
	Call Number	Admin @ si @ KWV2012			Serial	1864
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	Author	Fahad Shahbaz Khan; Muhammad Anwer Rao; Joost Van de Weijer; Andrew Bagdanov; Antonio Lopez; Michael Felsberg
	Title	Coloring Action Recognition in Still Images			Type	Journal Article
	Year	2013	Publication	International Journal of Computer Vision	Abbreviated Journal	IJCV
	Volume	105	Issue	3	Pages	205-221
	Keywords
	Abstract	In this article we investigate the problem of human action recognition in static images. By action recognition we intend a class of problems which includes both action classification and action detection (i.e. simultaneous localization and classification). Bag-of-words image representations yield promising results for action classification, and deformable part models perform very well object detection. The representations for action recognition typically use only shape cues and ignore color information. Inspired by the recent success of color in image classification and object detection, we investigate the potential of color for action classification and detection in static images. We perform a comprehensive evaluation of color descriptors and fusion approaches for action recognition. Experiments were conducted on the three datasets most used for benchmarking action recognition in still images: Willow, PASCAL VOC 2010 and Stanford-40. Our experiments demonstrate that incorporating color information considerably improves recognition performance, and that a descriptor based on color names outperforms pure color descriptors. Our experiments demonstrate that late fusion of color and shape information outperforms other approaches on action recognition. Finally, we show that the different color–shape fusion approaches result in complementary information and combining them yields state-of-the-art performance for action classification.
	Address
	Corporate Author				Thesis
	Publisher	Springer US	Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN	0920-5691	ISBN		Medium
	Area		Expedition		Conference
	Notes	CIC; ADAS; 600.057; 600.048			Approved	no
	Call Number	Admin @ si @ KRW2013			Serial	2285
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	Author	Jiaolong Xu; Sebastian Ramos; David Vazquez; Antonio Lopez
	Title	Hierarchical Adaptive Structural SVM for Domain Adaptation			Type	Journal Article
	Year	2016	Publication	International Journal of Computer Vision	Abbreviated Journal	IJCV
	Volume	119	Issue	2	Pages	159-178
	Keywords	Domain Adaptation; Pedestrian Detection
	Abstract	A key topic in classification is the accuracy loss produced when the data distribution in the training (source) domain differs from that in the testing (target) domain. This is being recognized as a very relevant problem for many computer vision tasks such as image classification, object detection, and object category recognition. In this paper, we present a novel domain adaptation method that leverages multiple target domains (or sub-domains) in a hierarchical adaptation tree. The core idea is to exploit the commonalities and differences of the jointly considered target domains. Given the relevance of structural SVM (SSVM) classifiers, we apply our idea to the adaptive SSVM (A-SSVM), which only requires the target domain samples together with the existing source-domain classifier for performing the desired adaptation. Altogether, we term our proposal as hierarchical A-SSVM (HA-SSVM). As proof of concept we use HA-SSVM for pedestrian detection, object category recognition and face recognition. In the former we apply HA-SSVM to the deformable partbased model (DPM) while in the rest HA-SSVM is applied to multi-category classifiers. We will show how HA-SSVM is effective in increasing the detection/recognition accuracy with respect to adaptation strategies that ignore the structure of the target data. Since, the sub-domains of the target data are not always known a priori, we shown how HA-SSVM can incorporate sub-domain discovery for object category recognition.
	Address
	Corporate Author				Thesis
	Publisher	Springer US	Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN	0920-5691	ISBN		Medium
	Area		Expedition		Conference
	Notes	ADAS; 600.085; 600.082; 600.076			Approved	no
	Call Number	Admin @ si @ XRV2016			Serial	2669
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