Miguel Reyes, Jose Ramirez Moreno, Juan R Revilla, Petia Radeva, & Sergio Escalera. (2011). ADiBAS: Sistema Multisensor de Adquisicion Automatica de Datos Corporales Objetivos, Robustos y Fiables para el Analisis de la Postura y el Movimiento. In 6th Congreso Iberoamericano de Tecnologia de Apoyo a la Discapacidad (pp. 939–944).
Abstract: El análisis de la postura y del rango de movimiento son fundamentales para conocer la optimización del gesto y mejorar, de este modo, el rendimiento y la detección de posibles lesiones. Esta cuantificación es especialmente interesante en deportistas o en pacientes que presentan alguna lesión neurológica o del sistema musculo-esquelético, ya que permite conocer el proceso evolutivo de estos pacientes, evaluar la eficacia de la terapia aplicada y proponer, en caso necesario, una modificación del protocolo de tratamiento.
En este trabajo presentamos un sistema automático que permite, mediante una tecnología no invasiva, la captación automática de marcadores LED situados sobre el paciente y su posterior análisis con el fin de mostrar al especialista datos objetivos que permitan un mejor soporte diagnóstico. También se describe un
sistema analítico de la postura corporal sin marcadores, donde su ejecución durante secuencias dinámicas aporta un alto grado de naturalidad al paciente a la hora de realizar los ejercicios funcionales.
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Antonio Hernandez, Carlo Gatta, Sergio Escalera, Laura Igual, Victoria Martin Yuste, & Petia Radeva. (2011). Accurate and Robust Fully-Automatic QCA: Method and Numerical Validation. In 14th International Conference on Medical Image Computing and Computer Assisted Intervention (Vol. 14, pp. 496–503). Springer.
Abstract: The Quantitative Coronary Angiography (QCA) is a methodology used to evaluate the arterial diseases and, in particular, the degree of stenosis. In this paper we propose AQCA, a fully automatic method for vessel segmentation based on graph cut theory. Vesselness, geodesic paths and a new multi-scale edgeness map are used to compute a globally optimal artery segmentation. We evaluate the method performance in a rigorous numerical way on two datasets. The method can detect an artery with precision 92.9 +/- 5% and sensitivity 94.2 +/- 6%. The average absolute distance error between detected and ground truth centerline is 1.13 +/- 0.11 pixels (about 0.27 +/- 0.025 mm) and the absolute relative error in the vessel caliber estimation is 2.93% with almost no bias. Moreover, the method can discriminate between arteries and catheter with an accuracy of 96.4%.
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Xavier Carrillo, E Fernandez-Nofrerias, Francesco Ciompi, Oriol Rodriguez-Leor, Petia Radeva, Neus Salvatella, et al. (2011). Changes in Radial Artery Volume Assessed Using Intravascular Ultrasound: A Comparison of Two Vasodilator Regimens in Transradial Coronary Intervention. JOIC - Journal of Invasive Cardiology, 23(10), 401–404.
Abstract: OBJECTIVES:
This study used intravascular ultrasound (IVUS) to evaluate radial artery volume changes after intraarterial administration of nitroglycerin and/or verapamil.
BACKGROUND:
Radial artery spasm, which is associated with radial artery size, is the main limitation of the transradial approach in percutaneous coronary interventions (PCI).
METHODS:
This prospective, randomized study compared the effect of two intra-arterial vasodilator regimens on radial artery volume: 0.2 mg of nitroglycerin plus 2.5 mg of verapamil (Group 1; n = 15) versus 2.5 mg of verapamil alone (Group 2; n = 15). Radial artery lumen volume was assessed using IVUS at two time points: at baseline (5 minutes after sheath insertion) and post-vasodilator (1 minute after drug administration). The luminal volume of the radial artery was computed using ECOC Random Fields (ECOC-RF), a technique used for automatic segmentation of luminal borders in longitudinal cut images from IVUS sequences.
RESULTS:
There was a significant increase in arterial lumen volume in both groups, with an increase from 451 ± 177 mm³ to 508 ± 192 mm³ (p = 0.001) in Group 1 and from 456 ± 188 mm³ to 509 ± 170 mm³ (p = 0.001) in Group 2. There were no significant differences between the groups in terms of absolute volume increase (58 mm³ versus 53 mm³, respectively; p = 0.65) or in relative volume increase (14% versus 20%, respectively; p = 0.69).
CONCLUSIONS:
Administration of nitroglycerin plus verapamil or verapamil alone to the radial artery resulted in similar increases in arterial lumen volume according to ECOC-RF IVUS measurements.
Keywords: radial; vasodilator treatment; percutaneous coronary intervention; IVUS; volumetric IVUS analysis
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Francesco Ciompi, A. Palaioroutas, M. Loeve, Oriol Pujol, Petia Radeva, H. Tiddens, et al. (2011). Lung Tissue Classification in Severe Advanced Cystic Fibrosis from CT Scans. In In MICCAI 2011 4th International Workshop on Pulmonary Image Analysis.
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Carlo Gatta, Eloi Puertas, & Oriol Pujol. (2011). Multi-Scale Stacked Sequential Learning. PR - Pattern Recognition, 44(10-11), 2414–2416.
Abstract: One of the most widely used assumptions in supervised learning is that data is independent and identically distributed. This assumption does not hold true in many real cases. Sequential learning is the discipline of machine learning that deals with dependent data such that neighboring examples exhibit some kind of relationship. In the literature, there are different approaches that try to capture and exploit this correlation, by means of different methodologies. In this paper we focus on meta-learning strategies and, in particular, the stacked sequential learning approach. The main contribution of this work is two-fold: first, we generalize the stacked sequential learning. This generalization reflects the key role of neighboring interactions modeling. Second, we propose an effective and efficient way of capturing and exploiting sequential correlations that takes into account long-range interactions by means of a multi-scale pyramidal decomposition of the predicted labels. Additionally, this new method subsumes the standard stacked sequential learning approach. We tested the proposed method on two different classification tasks: text lines classification in a FAQ data set and image classification. Results on these tasks clearly show that our approach outperforms the standard stacked sequential learning. Moreover, we show that the proposed method allows to control the trade-off between the detail and the desired range of the interactions.
Keywords: Stacked sequential learning; Multiscale; Multiresolution; Contextual classification
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Laura Igual, Joan Carles Soliva, Antonio Hernandez, Sergio Escalera, Xavier Jimenez, Oscar Vilarroya, et al. (2011). A fully-automatic caudate nucleus segmentation of brain MRI: Application in volumetric analysis of pediatric attention-deficit/hyperactivity disorder. BEO - BioMedical Engineering Online, 10(105), 1–23.
Abstract: Background
Accurate automatic segmentation of the caudate nucleus in magnetic resonance images (MRI) of the brain is of great interest in the analysis of developmental disorders. Segmentation methods based on a single atlas or on multiple atlases have been shown to suitably localize caudate structure. However, the atlas prior information may not represent the structure of interest correctly. It may therefore be useful to introduce a more flexible technique for accurate segmentations.
Method
We present Cau-dateCut: a new fully-automatic method of segmenting the caudate nucleus in MRI. CaudateCut combines an atlas-based segmentation strategy with the Graph Cut energy-minimization framework. We adapt the Graph Cut model to make it suitable for segmenting small, low-contrast structures, such as the caudate nucleus, by defining new energy function data and boundary potentials. In particular, we exploit information concerning the intensity and geometry, and we add supervised energies based on contextual brain structures. Furthermore, we reinforce boundary detection using a new multi-scale edgeness measure.
Results
We apply the novel CaudateCut method to the segmentation of the caudate nucleus to a new set of 39 pediatric attention-deficit/hyperactivity disorder (ADHD) patients and 40 control children, as well as to a public database of 18 subjects. We evaluate the quality of the segmentation using several volumetric and voxel by voxel measures. Our results show improved performance in terms of segmentation compared to state-of-the-art approaches, obtaining a mean overlap of 80.75%. Moreover, we present a quantitative volumetric analysis of caudate abnormalities in pediatric ADHD, the results of which show strong correlation with expert manual analysis.
Conclusion
CaudateCut generates segmentation results that are comparable to gold-standard segmentations and which are reliable in the analysis of differentiating neuroanatomical abnormalities between healthy controls and pediatric ADHD.
Keywords: Brain caudate nucleus; segmentation; MRI; atlas-based strategy; Graph Cut framework
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Victor Ponce, Mario Gorga, Xavier Baro, Petia Radeva, & Sergio Escalera. (2011). Analisis de la Expresion Oral y Gestual en Proyectos Fin de Carrera Via un Sistema de Vision Artificial (Vol. 4).
Abstract: La comunicación y expresión oral es una competencia de especial relevancia en el EEES. No obstante, en muchas enseñanzas superiores la puesta en práctica de esta competencia ha sido relegada principalmente a la presentación de proyectos fin de carrera. Dentro de un proyecto de innovación docente, se ha desarrollado una herramienta informática para la extracción de información objetiva para el análisis de la expresión oral y gestual de los alumnos. El objetivo es dar un “feedback” a los estudiantes que les permita mejorar la calidad de sus presentaciones. El prototipo inicial que se presenta en este trabajo permite extraer de forma automática información audiovisual y analizarla mediante técnicas de aprendizaje. El sistema ha sido aplicado a 15 proyectos fin de carrera y 15 exposiciones dentro de una asignatura de cuarto curso. Los resultados obtenidos muestran la viabilidad del sistema para sugerir factores que ayuden tanto en el éxito de la comunicación así como en los criterios de evaluación.
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Sergio Escalera, David Masip, Eloi Puertas, Petia Radeva, & Oriol Pujol. (2011). Online Error-Correcting Output Codes. PRL - Pattern Recognition Letters, 32(3), 458–467.
Abstract: IF JCR CCIA 1.303 2009 54/103
This article proposes a general extension of the error correcting output codes framework to the online learning scenario. As a result, the final classifier handles the addition of new classes independently of the base classifier used. In particular, this extension supports the use of both online example incremental and batch classifiers as base learners. The extension of the traditional problem independent codings one-versus-all and one-versus-one is introduced. Furthermore, two new codings are proposed, unbalanced online ECOC and a problem dependent online ECOC. This last online coding technique takes advantage of the problem data for minimizing the number of dichotomizers used in the ECOC framework while preserving a high accuracy. These techniques are validated on an online setting of 11 data sets from UCI database and applied to two real machine vision applications: traffic sign recognition and face recognition. As a result, the online ECOC techniques proposed provide a feasible and robust way for handling new classes using any base classifier.
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Michal Drozdzal, Santiago Segui, Carolina Malagelada, Fernando Azpiroz, Jordi Vitria, & Petia Radeva. (2011). Interactive Labeling of WCE Images. In J. Vitria, J. M. R. Sanches, & M. Hernández (Eds.), 5th Iberian Conference on Pattern Recognition and Image Analysis (Vol. 6669, pp. 143–150). Springer.
Abstract: A high quality labeled training set is necessary for any supervised machine learning algorithm. Labeling of the data can be a very expensive process, specially while dealing with data of high variability and complexity. A good example of such data are the videos from Wireless Capsule Endoscopy. Building a representative WCE data set means many videos to be labeled by an expert. The problem that occurs is the data diversity, in the space of the features, from different WCE studies. That means that when new data arrives it is highly probable that it will not be represented in the training set, thus getting a high probability of performing an error when applying machine learning schemes. In this paper an interactive labeling scheme that allows reducing expert effort in the labeling process is presented. It is shown that the number of human interventions can be significantly reduced. The proposed system allows the annotation of informative/non-informative frames of the WCE video with less than 100 clicks
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Mirko Arnold, Stephan Ameling, Anarta Ghosh, & Gerard Lacey. (2011). Quality Improvement of Endoscopy Videos. In Proceedings of the 8th IASTED International Conference on Biomedical Engineering (Vol. 723).
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Joan M. Nuñez. (2011). Computer vision techniques for characterization of finger joints in X-ray image (Dr. Fernando Vilariño and Dra. Debora Gil, Ed.) (Vol. 165). Master's thesis, , .
Abstract: Rheumatoid arthritis (RA) is an autoimmune inflammatory type of arthritis which mainly affects hands on its first stages. Though it is a chronic disease and there is no cure for it, treatments require an accurate assessment of illness evolution. Such assessment is based on evaluation of hand X-ray images by using one of the several available semi-quantitative methods. This task requires highly trained medical personnel. That is why the automation of the assessment would allow professionals to save time and effort. Two stages are involved in this task. Firstly, the joint detection, afterwards, the joint characterization. Unlike the little existing previous work, this contribution clearly separates those two stages and sets the foundations of a modular assessment system focusing on the characterization stage. A hand joint dataset is created and an accurate data analysis is achieved in order to identify relevant features. Since the sclerosis and the lower bone were decided to be the most important features, different computer vision techniques were used in order to develop a detector system for both of them. Joint space width measures are provided and their correlation with Sharp-Van der Heijde is verified
Keywords: Rheumatoid arthritis, X-ray, Sharp Van der Heijde, joint characterization, sclerosis detection, bone detection, edge, ridge
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Panagiota Spyridonos, Fernando Vilariño, Jordi Vitria, Petia Radeva, Fernando Azpiroz, & Juan Malagelada. (2011). Device, system and method for automatic detection of contractile activity in an image frame.
Abstract: A device, system and method for automatic detection of contractile activity of a body lumen in an image frame is provided, wherein image frames during contractile activity are captured and/or image frames including contractile activity are automatically detected, such as through pattern recognition and/or feature extraction to trace image frames including contractions, e.g., with wrinkle patterns. A manual procedure of annotation of contractions, e.g. tonic contractions in capsule endoscopy, may consist of the visualization of the whole video by a specialist, and the labeling of the contraction frames. Embodiments of the present invention may be suitable for implementation in an in vivo imaging system.
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Jorge Bernal, F. Javier Sanchez, & Fernando Vilariño. (2011). Current Challenges on Polyp Detection in Colonoscopy Videos: From Region Segmentation to Region Classification. a Pattern Recognition-based Approach.ased Approach. In K. Djemal (Ed.), 2nd International Workshop on Medical Image Analysis and Descriptionfor Diagnosis Systems (pp. 62–71). SciTePress.
Abstract: In this paper we present our approach on real-time polyp detection in colonoscopy videos. Our method consists of three stages: Image Segmentation, Region Description and Image Classification. Taking into account the constraints of our project, we introduce our segmentation system that is based on the model of appearance of the polyp that we have defined after observing real videos from colonoscopy processes. The output of this stage will ideally be a low number of regions of which one of them should cover the whole polyp region (if there is one in the image). This regions will be described in terms of features and, as a result of a machine learning schema, classified based on the values that they have for the several features that we will use on their description. Although we are still on the early stages of the project, we present some preliminary segmentation results that indicates that we are going in a good direction.
Keywords: Medical Imaging, Colonoscopy, Pattern Recognition, Segmentation, Polyp Detection, Region Description, Machine Learning, Real-time.
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Jorge Bernal, F. Javier Sanchez, & Fernando Vilariño. (2011). A Region Segmentation Method for Colonoscopy Images Using a Model of Polyp Appearance. In Mario João and Hernández J. and S. Vitrià (Ed.), 5th Iberian Conference on Pattern Recognition and Image Analysis (Vol. 6669, pp. 134–143 ). LNCS.
Abstract: This work aims at the segmentation of colonoscopy images into a minimum number of informative regions. Our method performs in a way such, if a polyp is present in the image, it will be exclusively and totally contained in a single region. This result can be used in later stages to classify regions as polyp-containing candidates. The output of the algorithm also defines which regions can be considered as non-informative. The algorithm starts with a high number of initial regions and merges them taking into account the model of polyp appearance obtained from available data. The results show that our segmentations of polyp regions are more accurate than state-of-the-art methods.
Keywords: Colonoscopy, Polyp Detection, Region Merging, Region Segmentation.
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Jorge Bernal, Fernando Vilariño, & F. Javier Sanchez. (2011). Towards Intelligent Systems for Colonoscopy. In Paul Miskovitz (Ed.), Colonoscopy (Vol. 1, pp. 257–282). Intech.
Abstract: In this chapter we present tools that can be used to build intelligent systems for colonoscopy.
The idea is, by using methods based on computer vision and artificial intelligence, add significant value to the colonoscopy procedure. Intelligent systems are being used to assist in other medical interventions
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