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Author Albert Andaluz
Title Harmonic Phase Flow: User's guide Type Manual
Year 2012 Publication CVC Abbreviated Journal
Volume Issue Pages
Keywords
Abstract HPF is a plugin for the computation of clinical scores under Osirix.
This manual provides a basic guide for experienced clinical staff. Chapter 1 provides the theoretical background in which this plugin is based.
Next, in chapter 2 we provide basic instructions for installing and uninstalling this plugin. chapter 3we shows a step-by-step scenario to compute clinical scores from tagged-MRI images with HPF. Finally, in chapter 4 we provide a quick guide for plugin developers
Address Bellaterra, Barcelona (Spain)
Corporate Author Computer Vision Center Thesis
Publisher CVC Place of Publication Barcelona Editor
Language english Summary Language english Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN Medium
Area Expedition Conference
Notes (up) IAM Approved no
Call Number IAM @ iam @ And2012 Serial 1863
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Author Patricia Marquez; Debora Gil ; Aura Hernandez-Sabate
Title Error Analysis for Lucas-Kanade Based Schemes Type Conference Article
Year 2012 Publication 9th International Conference on Image Analysis and Recognition Abbreviated Journal
Volume 7324 Issue I Pages 184-191
Keywords Optical flow, Confidence measure, Lucas-Kanade, Cardiac Magnetic Resonance
Abstract Optical flow is a valuable tool for motion analysis in medical imaging sequences. A reliable application requires determining the accuracy of the computed optical flow. This is a main challenge given the absence of ground truth in medical sequences. This paper presents an error analysis of Lucas-Kanade schemes in terms of intrinsic design errors and numerical stability of the algorithm. Our analysis provides a confidence measure that is naturally correlated to the accuracy of the flow field. Our experiments show the higher predictive value of our confidence measure compared to existing measures.
Address Aveiro, Portugal
Corporate Author Thesis
Publisher Springer-Verlag Berlin Heidelberg Place of Publication Editor
Language english Summary Language Original Title
Series Editor Campilho, Aurélio and Kamel, Mohamed Series Title Lecture Notes in Computer Science Abbreviated Series Title LNCS
Series Volume Series Issue Edition
ISSN 0302-9743 ISBN 978-3-642-31294-6 Medium
Area Expedition Conference ICIAR
Notes (up) IAM Approved no
Call Number IAM @ iam @ MGH2012a Serial 1899
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Author Albert Andaluz; Francesc Carreras; Cristina Santa Marta;Debora Gil
Title Myocardial torsion estimation with Tagged-MRI in the OsiriX platform Type Conference Article
Year 2012 Publication ISBI Workshop on Open Source Medical Image Analysis software Abbreviated Journal
Volume Issue Pages
Keywords
Abstract Myocardial torsion (MT) plays a crucial role in the assessment of the functionality of the
left ventricle. For this purpose, the IAM group at the CVC has developed the Harmonic Phase Flow (HPF) plugin for the Osirix DICOM platform . We have validated its funcionalty on sequences acquired using different protocols and including healthy and pathological cases. Results show similar torsion trends for SPAMM acquisitions, with pathological cases introducing expected deviations from the ground truth. Finally, we provide the plugin free of charge at http://iam.cvc.uab.es
Address Barcelona, Spain
Corporate Author Thesis
Publisher IEEE Place of Publication Editor Wiro Niessen (Erasmus MC) and Marc Modat (UCL)
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN Medium
Area Expedition Conference ISBI
Notes (up) IAM Approved no
Call Number IAM @ iam @ ACS2012 Serial 1900
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Author Ferran Poveda; Enric Marti; Debora Gil; Francesc Carreras; Manel Ballester
Title Helical Structure of Ventricular Anatomy by Diffusion Tensor Cardiac MR Tractography Type Journal Article
Year 2012 Publication Journal of American College of Cardiology Abbreviated Journal JACC
Volume 5 Issue 7 Pages 754-755
Keywords
Abstract It is widely accepted that myocardial fiber architecture plays a critical role in myocardial contractility and relaxation (1). However, there is a lack of consensus about the distribution of the myocardial fibers and their spatial arrangement in the left and right ventricles. An understanding of the cardiac architecture should benefit the ventricular functional assessment, left ventricular reconstructive surgery planning, or resynchronization therapy in heart failure. Researchers have proposed several conceptual models to describe the architecture of the heart, ranging from gross dissection to histological presentation. The cardiac mesh model (2) proposes that the myocytes are arranged longitudinally and radially change their angulation along the myocardial depth. By contrast, the helical ventricular myocardial model states that the ventricular myocardium is a continuous anatomical helical layout of myocardial fibers (1
Address
Corporate Author Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 1936-878X ISBN Medium
Area Expedition Conference
Notes (up) IAM Approved no
Call Number IAM @ iam @ PMG2012 Serial 1985
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Author Ferran Poveda; Debora Gil;Enric Marti
Title Multi-resolution DT-MRI cardiac tractography Type Conference Article
Year 2012 Publication Statistical Atlases And Computational Models Of The Heart: Imaging and Modelling Challenges Abbreviated Journal
Volume 7746 Issue Pages 270-277
Keywords
Abstract Even using objective measures from DT-MRI no consensus about myocardial architecture has been achieved so far. Streamlining provides good reconstructions at low level of detail, but falls short to give global abstract interpretations. In this paper, we present a multi-resolution methodology that is able to produce simplified representations of cardiac architecture. Our approach produces a reduced set of tracts that are representative of the main geometric features of myocardial anatomical structure. Experiments show that fiber geometry is preserved along reductions, which validates the simplified model for interpretation of cardiac architecture.
Address Nice, France
Corporate Author Thesis
Publisher Springer Berlin Heidelberg Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title LNCS
Series Volume Series Issue Edition
ISSN 0302-9743 ISBN 978-3-642-36960-5 Medium
Area Expedition Conference STACOM
Notes (up) IAM Approved no
Call Number IAM @ iam @ PGM2012 Serial 1986
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Author Debora Gil;Agnes Borras;Ruth Aris;Mariano Vazquez;Pierre Lafortune; Guillame Houzeaux
Title What a difference in biomechanics cardiac fiber makes Type Conference Article
Year 2012 Publication Statistical Atlases And Computational Models Of The Heart: Imaging and Modelling Challenges Abbreviated Journal
Volume 7746 Issue Pages 253-260
Keywords
Abstract Computational simulations of the heart are a powerful tool for a comprehensive understanding of cardiac function and its intrinsic relationship with its muscular architecture. Cardiac biomechanical models require a vector field representing the orientation of cardiac fibers. A wrong orientation of the fibers can lead to a
non-realistic simulation of the heart functionality. In this paper we explore the impact of the fiber information on the simulated biomechanics of cardiac muscular anatomy. We have used the John Hopkins database to perform a biomechanical simulation using both a synthetic benchmark fiber distribution and the data obtained experimentally from DTI. Results illustrate how differences in fiber orientation affect heart deformation along cardiac cycle.
Address Nice, France
Corporate Author Thesis
Publisher Springer Berlin Heidelberg Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 0302-9743 ISBN 978-3-642-36960-5 Medium
Area Expedition Conference STACOM
Notes (up) IAM Approved no
Call Number IAM @ iam @ GBA2012 Serial 1987
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Author Sergio Vera; Miguel Angel Gonzalez Ballester; Debora Gil
Title Optimal Medial Surface Generation for Anatomical Volume Representations Type Book Chapter
Year 2012 Publication Abdominal Imaging. Computational and Clinical Applications Abbreviated Journal LNCS
Volume 7601 Issue Pages 265-273
Keywords Medial surface representation; volume reconstruction
Abstract Medial representations are a widely used technique in abdominal organ shape representation and parametrization. Those methods require good medial manifolds as a starting point. Any medial
surface used to parametrize a volume should be simple enough to allow an easy manipulation and complete enough to allow an accurate reconstruction of the volume. Obtaining good quality medial
surfaces is still a problem with current iterative thinning methods. This forces the usage of generic, pre-calculated medial templates that are adapted to the final shape at the cost of a drop in volume reconstruction.
This paper describes an operator for generation of medial structures that generates clean and complete manifolds well suited for their further use in medial representations of abdominal organ volumes. While being simpler than thinning surfaces, experiments show its high performance in volume reconstruction and preservation of medial surface main branching topology.
Address Nice, France
Corporate Author Thesis
Publisher Springer Berlin Heidelberg Place of Publication Editor Yoshida, Hiroyuki and Hawkes, David and Vannier, MichaelW.
Language Summary Language Original Title
Series Editor Series Title Lecture Notes in Computer Science Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 0302-9743 ISBN 978-3-642-33611-9 Medium
Area Expedition Conference STACOM
Notes (up) IAM Approved no
Call Number IAM @ iam @ VGG2012b Serial 1988
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Author Sergio Vera; Miguel Angel Gonzalez Ballester; Debora Gil
Title A medial map capturing the essential geometry of organs Type Conference Article
Year 2012 Publication ISBI Workshop on Open Source Medical Image Analysis software Abbreviated Journal
Volume Issue Pages 1691 - 1694
Keywords Medial Surface Representation, Volume Reconstruction,Geometry , Image reconstruction , Liver , Manifolds , Shape , Surface morphology , Surface reconstruction
Abstract Medial representations are powerful tools for describing and parameterizing the volumetric shape of anatomical structures. Accurate computation of one pixel wide medial surfaces is mandatory. Those surfaces must represent faithfully the geometry of the volume. Although morphological methods produce excellent results in 2D, their complexity and quality drops across dimensions, due to a more complex description of pixel neighborhoods. This paper introduces a continuous operator for accurate and efficient computation of medial structures of arbitrary dimension. Our experiments show its higher performance for medical imaging applications in terms of simplicity of medial structures and capability for reconstructing the anatomical volume
Address Barcelona,Spain
Corporate Author Thesis
Publisher IEEE Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 1945-7928 ISBN 978-1-4577-1857-1 Medium
Area Expedition Conference ISBI
Notes (up) IAM Approved no
Call Number IAM @ iam @ VGG2012a Serial 1989
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Author Francesc Carreras; Jaume Garcia; Debora Gil; Sandra Pujadas; Chi ho Lion; R.Suarez-Arias; R.Leta; Xavier Alomar; Manuel Ballester; Guillem Pons-Llados
Title Left ventricular torsion and longitudinal shortening: two fundamental components of myocardial mechanics assessed by tagged cine-MRI in normal subjects Type Journal Article
Year 2012 Publication International Journal of Cardiovascular Imaging Abbreviated Journal IJCI
Volume 28 Issue 2 Pages 273-284
Keywords Magnetic resonance imaging (MRI); Tagging MRI; Cardiac mechanics; Ventricular torsion
Abstract Cardiac magnetic resonance imaging (Cardiac MRI) has become a gold standard diagnostic technique for the assessment of cardiac mechanics, allowing the non-invasive calculation of left ventric- ular long axis longitudinal shortening (LVLS) and absolute myocardial torsion (AMT) between basal and apical left ventricular slices, a movement directly related to the helicoidal anatomic disposition of the myocardial fibers. The aim of this study is to determine AMT and LVLS behaviour and normal values from a group of healthy subjects. A group of 21 healthy volunteers (15 males) (age: 23–55 y.o., mean:30.7 ± 7.5) were prospectively included in an obser- vational study by Cardiac MRI. Left ventricular rotation (degrees) was calculated by custom-made software (Harmonic Phase Flow) in consecutive LV short axis planes tagged cine-MRI sequences. AMT was determined from the difference between basal and apical planes LV rotations. LVLS (%) was determined from the LV longitudinal and horizontal axis cine-MRI images. All the 21 cases studied were interpretable, although in three cases the value of the LV apical rotation could not be determined. The mean rotation of the basal and apical planes at end-systole were -3.71° ± 0.84° and 6.73° ± 1.69° (n:18) respectively, resulting in a LV mean AMT of 10.48° ± 1.63° (n:18). End-systolic mean LVLS was 19.07 ± 2.71%. Cardiac MRI allows for the calculation of AMT and LVLS, fundamental functional components of the ventricular twist mechanics conditioned, in turn, by the anatomical helical layout of the myocardial fibers. These values provide complementary information about systolic ventricular function in relation to the traditional parameters used in daily practice.
Address
Corporate Author Thesis
Publisher Springer Netherlands Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 1569-5794 ISBN Medium
Area Expedition Conference
Notes (up) IAM; Approved no
Call Number IAM @ iam @ CGG2012 Serial 1496
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Author Aura Hernandez-Sabate; Debora Gil
Title The Benefits of IVUS Dynamics for Retrieving Stable Models of Arteries Type Book Chapter
Year 2012 Publication Intravascular Ultrasound Abbreviated Journal
Volume Issue Pages 185-206
Keywords
Abstract
Address
Corporate Author Thesis
Publisher Intech Place of Publication Editor Yasuhiro Honda
Language English Summary Language english Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN 978-953-307-900-4 Medium
Area Expedition Conference
Notes (up) IAM; ADAS Approved no
Call Number IAM @ iam @ HeG2012 Serial 1684
Permanent link to this record
 

 
Author Sergio Vera; Debora Gil; Antonio Lopez; Miguel Angel Gonzalez Ballester
Title Multilocal Creaseness Measure Type Journal
Year 2012 Publication The Insight Journal Abbreviated Journal IJ
Volume Issue Pages
Keywords Ridges, Valley, Creaseness, Structure Tensor, Skeleton,
Abstract This document describes the implementation using the Insight Toolkit of an algorithm for detecting creases (ridges and valleys) in N-dimensional images, based on the Local Structure Tensor of the image. In addition to the filter used to calculate the creaseness image, a filter for the computation of the structure tensor is also included in this submission.
Address
Corporate Author Alma IT Systems Thesis
Publisher Place of Publication Editor
Language english Summary Language english Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN Medium
Area Expedition Conference
Notes (up) IAM;ADAS; Approved no
Call Number IAM @ iam @ VGL2012 Serial 1840
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Author Patricia Marquez;Debora Gil;Aura Hernandez-Sabate
Title A Complete Confidence Framework for Optical Flow Type Conference Article
Year 2012 Publication 12th European Conference on Computer Vision – Workshops and Demonstrations Abbreviated Journal
Volume 7584 Issue 2 Pages 124-133
Keywords Optical flow, confidence measures, sparsification plots, error prediction plots
Abstract Medial representations are powerful tools for describing and parameterizing the volumetric shape of anatomical structures. Existing methods show excellent results when applied to 2D objects, but their quality drops across dimensions. This paper contributes to the computation of medial manifolds in two aspects. First, we provide a standard scheme for the computation of medial manifolds that avoid degenerated medial axis segments; second, we introduce an energy based method which performs independently of the dimension. We evaluate quantitatively the performance of our method with respect to existing approaches, by applying them to synthetic shapes of known medial geometry. Finally, we show results on shape representation of multiple abdominal organs, exploring the use of medial manifolds for the representation of multi-organ relations.
Address
Corporate Author Thesis
Publisher Springer-Verlag Place of Publication Florence, Italy, October 7-13, 2012 Editor Andrea Fusiello, Vittorio Murino ,Rita Cucchiara
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title LNCS
Series Volume Series Issue Edition
ISSN ISBN 978-3-642-33867-0 Medium
Area Expedition Conference ECCVW
Notes (up) IAM;ADAS; Approved no
Call Number IAM @ iam @ MGH2012b Serial 1991
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Author Sergio Vera; Debora Gil; Agnes Borras; F. Javier Sanchez; Frederic Perez; Marius G. Linguraru; Miguel Angel Gonzalez Ballester
Title Computation and Evaluation of Medial Surfaces for Shape Representation of Abdominal Organs Type Book Chapter
Year 2012 Publication Workshop on Computational and Clinical Applications in Abdominal Imaging Abbreviated Journal
Volume 7029 Issue Pages 223–230
Keywords medial manifolds, abdomen.
Abstract Medial representations are powerful tools for describing and parameterizing the volumetric shape of anatomical structures. Existing methods show excellent results when applied to 2D
objects, but their quality drops across dimensions. This paper contributes to the computation of medial manifolds in two aspects. First, we provide a standard scheme for the computation of medial
manifolds that avoid degenerated medial axis segments; second, we introduce an energy based method which performs independently of the dimension. We evaluate quantitatively the performance of our
method with respect to existing approaches, by applying them to synthetic shapes of known medial geometry. Finally, we show results on shape representation of multiple abdominal organs,
exploring the use of medial manifolds for the representation of multi-organ relations.
Address Toronto; Canada;
Corporate Author Thesis
Publisher Springer Link Place of Publication Berlin Editor H. Yoshida et al
Language English Summary Language English Original Title
Series Editor Series Title Lecture Notes in Computer Science Abbreviated Series Title LNCS
Series Volume Series Issue Edition
ISSN 0302-9743 ISBN 978-3-642-28556-1 Medium
Area Expedition Conference ABDI
Notes (up) IAM;MV Approved no
Call Number IAM @ iam @ VGB2012 Serial 1834
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Author Jose Manuel Alvarez; Felipe Lumbreras; Antonio Lopez; Theo Gevers
Title Understanding Road Scenes using Visual Cues Type Miscellaneous
Year 2012 Publication European Conference on Computer Vision Abbreviated Journal
Volume Issue Pages
Keywords
Abstract DEMO
Address Florence; Italy
Corporate Author Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN Medium
Area Expedition Conference
Notes (up) ISE Approved no
Call Number Admin @ si @ ALL2012 Serial 2795
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Author Bhaskar Chakraborty; Michael Holte; Thomas B. Moeslund; Jordi Gonzalez
Title Selective Spatio-Temporal Interest Points Type Journal Article
Year 2012 Publication Computer Vision and Image Understanding Abbreviated Journal CVIU
Volume 116 Issue 3 Pages 396-410
Keywords
Abstract Recent progress in the field of human action recognition points towards the use of Spatio-TemporalInterestPoints (STIPs) for local descriptor-based recognition strategies. In this paper, we present a novel approach for robust and selective STIP detection, by applying surround suppression combined with local and temporal constraints. This new method is significantly different from existing STIP detection techniques and improves the performance by detecting more repeatable, stable and distinctive STIPs for human actors, while suppressing unwanted background STIPs. For action representation we use a bag-of-video words (BoV) model of local N-jet features to build a vocabulary of visual-words. To this end, we introduce a novel vocabulary building strategy by combining spatial pyramid and vocabulary compression techniques, resulting in improved performance and efficiency. Action class specific Support Vector Machine (SVM) classifiers are trained for categorization of human actions. A comprehensive set of experiments on popular benchmark datasets (KTH and Weizmann), more challenging datasets of complex scenes with background clutter and camera motion (CVC and CMU), movie and YouTube video clips (Hollywood 2 and YouTube), and complex scenes with multiple actors (MSR I and Multi-KTH), validates our approach and show state-of-the-art performance. Due to the unavailability of ground truth action annotation data for the Multi-KTH dataset, we introduce an actor specific spatio-temporal clustering of STIPs to address the problem of automatic action annotation of multiple simultaneous actors. Additionally, we perform cross-data action recognition by training on source datasets (KTH and Weizmann) and testing on completely different and more challenging target datasets (CVC, CMU, MSR I and Multi-KTH). This documents the robustness of our proposed approach in the realistic scenario, using separate training and test datasets, which in general has been a shortcoming in the performance evaluation of human action recognition techniques.
Address
Corporate Author Thesis
Publisher Elsevier Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 1077-3142 ISBN Medium
Area Expedition Conference
Notes (up) ISE Approved no
Call Number Admin @ si @ CHM2012 Serial 1806
Permanent link to this record