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| Author | Mariano Vazquez; Ruth Aris; Guillaume Hozeaux; R.Aubry; P.Villar;Jaume Garcia ; Debora Gil; Francesc Carreras | ||||
| Title | A massively parallel computational electrophysiology model of the heart | Type | Journal Article | ||
| Year | 2011 | Publication | International Journal for Numerical Methods in Biomedical Engineering | Abbreviated Journal | IJNMBE |
| Volume | 27 | Issue | Pages | 1911-1929 | |
| Keywords | computational electrophysiology; parallelization; finite element methods | ||||
| Abstract | This paper presents a patient-sensitive simulation strategy capable of using the most efficient way the high-performance computational resources. The proposed strategy directly involves three different players: Computational Mechanics Scientists (CMS), Image Processing Scientists and Cardiologists, each one mastering its own expertise area within the project. This paper describes the general integrative scheme but focusing on the CMS side presents a massively parallel implementation of computational electrophysiology applied to cardiac tissue simulation. The paper covers different angles of the computational problem: equations, numerical issues, the algorithm and parallel implementation. The proposed methodology is illustrated with numerical simulations testing all the different possibilities, ranging from small domains up to very large ones. A key issue is the almost ideal scalability not only for large and complex problems but also for medium-size meshes. The explicit formulation is particularly well suited for solving this highly transient problems, with very short time-scale. | ||||
| Address | Swansea (UK) | ||||
| Corporate Author | John Wiley & Sons, Ltd. | Thesis | |||
| Publisher | John Wiley & Sons, Ltd. | Place of Publication | Editor | ||
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| Notes | IAM | Approved | no | ||
| Call Number | IAM @ iam @ VAH2011 | Serial | 1198 | ||
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| Author | Daniel Ponsa; Joan Serrat; Antonio Lopez | ||||
| Title | On-board image-based vehicle detection and tracking | Type | Journal Article | ||
| Year | 2011 | Publication | Transactions of the Institute of Measurement and Control | Abbreviated Journal | TIM |
| Volume | 33 | Issue | 7 | Pages | 783-805 |
| Keywords | vehicle detection | ||||
| Abstract | In this paper we present a computer vision system for daytime vehicle detection and localization, an essential step in the development of several types of advanced driver assistance systems. It has a reduced processing time and high accuracy thanks to the combination of vehicle detection with lane-markings estimation and temporal tracking of both vehicles and lane markings. Concerning vehicle detection, our main contribution is a frame scanning process that inspects images according to the geometry of image formation, and with an Adaboost-based detector that is robust to the variability in the different vehicle types (car, van, truck) and lighting conditions. In addition, we propose a new method to estimate the most likely three-dimensional locations of vehicles on the road ahead. With regards to the lane-markings estimation component, we have two main contributions. First, we employ a different image feature to the other commonly used edges: we use ridges, which are better suited to this problem. Second, we adapt RANSAC, a generic robust estimation method, to fit a parametric model of a pair of lane markings to the image features. We qualitatively assess our vehicle detection system in sequences captured on several road types and under very different lighting conditions. The processed videos are available on a web page associated with this paper. A quantitative evaluation of the system has shown quite accurate results (a low number of false positives and negatives) at a reasonable computation time. | ||||
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| Notes | ADAS | Approved | no | ||
| Call Number | ADAS @ adas @ PSL2011 | Serial | 1413 | ||
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| Author | Jose Manuel Alvarez; Antonio Lopez | ||||
| Title | Road Detection Based on Illuminant Invariance | Type | Journal Article | ||
| Year | 2011 | Publication | IEEE Transactions on Intelligent Transportation Systems | Abbreviated Journal | TITS |
| Volume | 12 | Issue | 1 | Pages | 184-193 |
| Keywords | road detection | ||||
| Abstract | By using an onboard camera, it is possible to detect the free road surface ahead of the ego-vehicle. Road detection is of high relevance for autonomous driving, road departure warning, and supporting driver-assistance systems such as vehicle and pedestrian detection. The key for vision-based road detection is the ability to classify image pixels as belonging or not to the road surface. Identifying road pixels is a major challenge due to the intraclass variability caused by lighting conditions. A particularly difficult scenario appears when the road surface has both shadowed and nonshadowed areas. Accordingly, we propose a novel approach to vision-based road detection that is robust to shadows. The novelty of our approach relies on using a shadow-invariant feature space combined with a model-based classifier. The model is built online to improve the adaptability of the algorithm to the current lighting and the presence of other vehicles in the scene. The proposed algorithm works in still images and does not depend on either road shape or temporal restrictions. Quantitative and qualitative experiments on real-world road sequences with heavy traffic and shadows show that the method is robust to shadows and lighting variations. Moreover, the proposed method provides the highest performance when compared with hue-saturation-intensity (HSI)-based algorithms. | ||||
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| Notes | ADAS | Approved | no | ||
| Call Number | ADAS @ adas @ AlL2011 | Serial | 1456 | ||
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| Author | Debora Gil; Aura Hernandez-Sabate; Mireia Brunat;Steven Jansen; Jordi Martinez-Vilalta | ||||
| Title | Structure-preserving smoothing of biomedical images | Type | Journal Article | ||
| Year | 2011 | Publication | Pattern Recognition | Abbreviated Journal | PR |
| Volume | 44 | Issue | 9 | Pages | 1842-1851 |
| Keywords | Non-linear smoothing; Differential geometry; Anatomical structures; segmentation; Cardiac magnetic resonance; Computerized tomography | ||||
| Abstract | Smoothing of biomedical images should preserve gray-level transitions between adjacent tissues, while restoring contours consistent with anatomical structures. Anisotropic diffusion operators are based on image appearance discontinuities (either local or contextual) and might fail at weak inter-tissue transitions. Meanwhile, the output of block-wise and morphological operations is prone to present a block structure due to the shape and size of the considered pixel neighborhood. In this contribution, we use differential geometry concepts to define a diffusion operator that restricts to image consistent level-sets. In this manner, the final state is a non-uniform intensity image presenting homogeneous inter-tissue transitions along anatomical structures, while smoothing intra-structure texture. Experiments on different types of medical images (magnetic resonance, computerized tomography) illustrate its benefit on a further process (such as segmentation) of images. | ||||
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| ISSN | 0031-3203 | ISBN | Medium | ||
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| Notes | IAM; ADAS | Approved | no | ||
| Call Number | IAM @ iam @ GHB2011 | Serial | 1526 | ||
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| Author | Aura Hernandez-Sabate; Debora Gil; Jaume Garcia; Enric Marti | ||||
| Title | Image-based Cardiac Phase Retrieval in Intravascular Ultrasound Sequences | Type | Journal Article | ||
| Year | 2011 | Publication | IEEE Transactions on Ultrasonics, Ferroelectrics and Frequency Control | Abbreviated Journal | T-UFFC |
| Volume | 58 | Issue | 1 | Pages | 60-72 |
| Keywords | 3-D exploring; ECG; band-pass filter; cardiac motion; cardiac phase retrieval; coronary arteries; electrocardiogram signal; image intensity local mean evolution; image-based cardiac phase retrieval; in vivo pullbacks acquisition; intravascular ultrasound sequences; longitudinal motion; signal extrema; time 36 ms; band-pass filters; biomedical ultrasonics; cardiovascular system; electrocardiography; image motion analysis; image retrieval; image sequences; medical image processing; ultrasonic imaging | ||||
| Abstract | Longitudinal motion during in vivo pullbacks acquisition of intravascular ultrasound (IVUS) sequences is a major artifact for 3-D exploring of coronary arteries. Most current techniques are based on the electrocardiogram (ECG) signal to obtain a gated pullback without longitudinal motion by using specific hardware or the ECG signal itself. We present an image-based approach for cardiac phase retrieval from coronary IVUS sequences without an ECG signal. A signal reflecting cardiac motion is computed by exploring the image intensity local mean evolution. The signal is filtered by a band-pass filter centered at the main cardiac frequency. Phase is retrieved by computing signal extrema. The average frame processing time using our setup is 36 ms. Comparison to manually sampled sequences encourages a deeper study comparing them to ECG signals. | ||||
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| ISSN | 0885-3010 | ISBN | Medium | ||
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| Notes | IAM;ADAS | Approved | no | ||
| Call Number | IAM @ iam @ HGG2011 | Serial | 1546 | ||
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| Author | Aura Hernandez-Sabate; Debora Gil; David Roche; Monica M. S. Matsumoto; Sergio S. Furuie | ||||
| Title | Inferring the Performance of Medical Imaging Algorithms | Type | Conference Article | ||
| Year | 2011 | Publication | 14th International Conference on Computer Analysis of Images and Patterns | Abbreviated Journal | |
| Volume | 6854 | Issue | Pages | 520-528 | |
| Keywords | Validation, Statistical Inference, Medical Imaging Algorithms. | ||||
| Abstract | Evaluation of the performance and limitations of medical imaging algorithms is essential to estimate their impact in social, economic or clinical aspects. However, validation of medical imaging techniques is a challenging task due to the variety of imaging and clinical problems involved, as well as, the difficulties for systematically extracting a reliable solely ground truth. Although specific validation protocols are reported in any medical imaging paper, there are still two major concerns: definition of standardized methodologies transversal to all problems and generalization of conclusions to the whole clinical data set.
We claim that both issues would be fully solved if we had a statistical model relating ground truth and the output of computational imaging techniques. Such a statistical model could conclude to what extent the algorithm behaves like the ground truth from the analysis of a sampling of the validation data set. We present a statistical inference framework reporting the agreement and describing the relationship of two quantities. We show its transversality by applying it to validation of two different tasks: contour segmentation and landmark correspondence. |
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| Address | Sevilla | ||||
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| Publisher | Springer-Verlag Berlin Heidelberg | Place of Publication | Berlin | Editor | Pedro Real; Daniel Diaz-Pernil; Helena Molina-Abril; Ainhoa Berciano; Walter Kropatsch |
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| Series Editor | Series Title | L | Abbreviated Series Title | LNCS | |
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| Area | Expedition | Conference | CAIP | ||
| Notes | IAM; ADAS | Approved | no | ||
| Call Number | IAM @ iam @ HGR2011 | Serial | 1676 | ||
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| Author | David Roche; Debora Gil; Jesus Giraldo | ||||
| Title | An inference model for analyzing termination conditions of Evolutionary Algorithms | Type | Conference Article | ||
| Year | 2011 | Publication | 14th Congrès Català en Intel·ligencia Artificial | Abbreviated Journal | |
| Volume | Issue | Pages | 216-225 | ||
| Keywords | Evolutionary Computation Convergence, Termination Conditions, Statistical Inference | ||||
| Abstract | In real-world problems, it is mandatory to design a termination condition for Evolutionary Algorithms (EAs) ensuring stabilization close to the unknown optimum. Distribution-based quantities are good candidates as far as suitable parameters are used. A main limitation for application to real-world problems is that such parameters strongly depend on the topology of the objective function, as well as, the EA paradigm used.
We claim that the termination problem would be fully solved if we had a model measuring to what extent a distribution-based quantity asymptotically behaves like the solution accuracy. We present a regression-prediction model that relates any two given quantities and reports if they can be statistically swapped as termination conditions. Our framework is applied to two issues. First, exploring if the parameters involved in the computation of distribution-based quantities influence their asymptotic behavior. Second, to what extent existing distribution-based quantities can be asymptotically exchanged for the accuracy of the EA solution. |
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| Address | Lleida, Catalonia (Spain) | ||||
| Corporate Author | Associació Catalana Intel·ligència Artificial | Thesis | |||
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| ISSN | ISBN | 978-1-60750-841-0 | Medium | ||
| Area | Expedition | Conference | CCIA | ||
| Notes | IAM | Approved | no | ||
| Call Number | IAM @ iam @ RGG2011a | Serial | 1677 | ||
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| Author | David Roche; Debora Gil; Jesus Giraldo | ||||
| Title | Using statistical inference for designing termination conditions ensuring convergence of Evolutionary Algorithms | Type | Conference Article | ||
| Year | 2011 | Publication | 11th European Conference on Artificial Life | Abbreviated Journal | |
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| Abstract | A main challenge in Evolutionary Algorithms (EAs) is determining a termination condition ensuring stabilization close to the optimum in real-world applications. Although for known test functions distribution-based quantities are good candidates (as far as suitable parameters are used), in real-world problems an open question still remains unsolved. How can we estimate an upper-bound for the termination condition value ensuring a given accuracy for the (unknown) EA solution?
We claim that the termination problem would be fully solved if we defined a quantity (depending only on the EA output) behaving like the solution accuracy. The open question would be, then, satisfactorily answered if we had a model relating both quantities, since accuracy could be predicted from the alternative quantity. We present a statistical inference framework addressing two topics: checking the correlation between the two quantities and defining a regression model for predicting (at a given confidence level) accuracy values from the EA output. |
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| Address | Paris, France | ||||
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| Area | Expedition | Conference | ECAL | ||
| Notes | IAM; | Approved | no | ||
| Call Number | IAM @ iam @ RGG2011b | Serial | 1678 | ||
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| Author | Naveen Onkarappa; Angel Sappa | ||||
| Title | Space Variant Representations for Mobile Platform Vision Applications | Type | Conference Article | ||
| Year | 2011 | Publication | 14th International Conference on Computer Analysis of Images and Patterns | Abbreviated Journal | |
| Volume | 6855 | Issue | II | Pages | 146-154 |
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| Abstract | The log-polar space variant representation, motivated by biological vision, has been widely studied in the literature. Its data reduction and invariance properties made it useful in many vision applications. However, due to its nature, it fails in preserving features in the periphery. In the current work, as an attempt to overcome this problem, we propose a novel space-variant representation. It is evaluated and proved to be better than the log-polar representation in preserving the peripheral information, crucial for on-board mobile vision applications. The evaluation is performed by comparing log-polar and the proposed representation once they are used for estimating dense optical flow. | ||||
| Address | Seville, Spain | ||||
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| Publisher | Springer Berlin Heidelberg | Place of Publication | Editor | P. Real, D. Diaz, H. Molina, A. Berciano, W. Kropatsch | |
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| ISSN | 0302-9743 | ISBN | 978-3-642-23677-8 | Medium | |
| Area | Expedition | Conference | CAIP | ||
| Notes | ADAS | Approved | no | ||
| Call Number | NaS2011; ADAS @ adas @ | Serial | 1686 | ||
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| Author | Jorge Bernal; F. Javier Sanchez; Fernando Vilariño | ||||
| Title | Current Challenges on Polyp Detection in Colonoscopy Videos: From Region Segmentation to Region Classification. a Pattern Recognition-based Approach.ased Approach | Type | Conference Article | ||
| Year | 2011 | Publication | 2nd International Workshop on Medical Image Analysis and Descriptionfor Diagnosis Systems | Abbreviated Journal | |
| Volume | Issue | Pages | 62-71 | ||
| Keywords | Medical Imaging, Colonoscopy, Pattern Recognition, Segmentation, Polyp Detection, Region Description, Machine Learning, Real-time. | ||||
| Abstract | In this paper we present our approach on real-time polyp detection in colonoscopy videos. Our method consists of three stages: Image Segmentation, Region Description and Image Classification. Taking into account the constraints of our project, we introduce our segmentation system that is based on the model of appearance of the polyp that we have defined after observing real videos from colonoscopy processes. The output of this stage will ideally be a low number of regions of which one of them should cover the whole polyp region (if there is one in the image). This regions will be described in terms of features and, as a result of a machine learning schema, classified based on the values that they have for the several features that we will use on their description. Although we are still on the early stages of the project, we present some preliminary segmentation results that indicates that we are going in a good direction. | ||||
| Address | Rome, Italy | ||||
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| Publisher | SciTePress | Place of Publication | Editor | Djemal, Khalifa | |
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| Area | 800 | Expedition | Conference | MIAD | |
| Notes | MV;SIAI | Approved | no | ||
| Call Number | IAM @ iam @ BSV2011a | Serial | 1695 | ||
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| Author | Jorge Bernal; F. Javier Sanchez; Fernando Vilariño | ||||
| Title | A Region Segmentation Method for Colonoscopy Images Using a Model of Polyp Appearance | Type | Conference Article | ||
| Year | 2011 | Publication | 5th Iberian Conference on Pattern Recognition and Image Analysis | Abbreviated Journal | |
| Volume | 6669 | Issue | Pages | 134-143 | |
| Keywords | Colonoscopy, Polyp Detection, Region Merging, Region Segmentation. | ||||
| Abstract | This work aims at the segmentation of colonoscopy images into a minimum number of informative regions. Our method performs in a way such, if a polyp is present in the image, it will be exclusively and totally contained in a single region. This result can be used in later stages to classify regions as polyp-containing candidates. The output of the algorithm also defines which regions can be considered as non-informative. The algorithm starts with a high number of initial regions and merges them taking into account the model of polyp appearance obtained from available data. The results show that our segmentations of polyp regions are more accurate than state-of-the-art methods. | ||||
| Address | Las Palmas de Gran Canaria, June 2011 | ||||
| Corporate Author | SpringerLink | Thesis | |||
| Publisher | Place of Publication | Editor | Vitrià, Jordi and Sanches, João and Hernández, Mario | ||
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| Series Editor | Series Title | Lecture Notes in Computer Science | Abbreviated Series Title | LNCS | |
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| ISSN | ISBN | 978-3-642-21256-7 | Medium | ||
| Area | 800 | Expedition | Conference | IbPRIA | |
| Notes | MV;SIAI | Approved | no | ||
| Call Number | IAM @ iam @ BSV2011c | Serial | 1696 | ||
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| Author | Jorge Bernal; Fernando Vilariño; F. Javier Sanchez | ||||
| Title | Towards Intelligent Systems for Colonoscopy | Type | Book Chapter | ||
| Year | 2011 | Publication | Colonoscopy | Abbreviated Journal | |
| Volume | 1 | Issue | Pages | 257-282 | |
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| Abstract | In this chapter we present tools that can be used to build intelligent systems for colonoscopy.
The idea is, by using methods based on computer vision and artificial intelligence, add significant value to the colonoscopy procedure. Intelligent systems are being used to assist in other medical interventions |
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| Publisher | Intech | Place of Publication | Editor | Paul Miskovitz | |
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| ISSN | ISBN | 978-953-307-568-6 | Medium | ||
| Area | 800 | Expedition | Conference | ||
| Notes | MV;SIAI | Approved | no | ||
| Call Number | IAM @ iam @ BVS2011 | Serial | 1697 | ||
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| Author | Jorge Bernal; F. Javier Sanchez; Fernando Vilariño | ||||
| Title | Integration of Valley Orientation Distribution for Polyp Region Identification in Colonoscopy | Type | Conference Article | ||
| Year | 2011 | Publication | In MICCAI 2011 Workshop on Computational and Clinical Applications in Abdominal Imaging | Abbreviated Journal | |
| Volume | 6668 | Issue | Pages | 76-83 | |
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| Abstract | This work presents a region descriptor based on the integration of the information that the depth of valleys image provides. The depth of valleys image is based on the presence of intensity valleys around polyps due to the image acquisition. Our proposed method consists of defining, for each point, a series of radial sectors around it and then accumulates the maxima of the depth of valleys image only if the orientation of the intensity valley coincides with the orientation of the sector above. We apply our descriptor to a prior segmentation of the images and we present promising results on polyp detection, outperforming other approaches that also integrate depth of valleys information. | ||||
| Address | Toronto, Canada | ||||
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| Publisher | Springer Link | Place of Publication | Editor | ||
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| Series Editor | Series Title | Lecture Notes in Computer Science | Abbreviated Series Title | ||
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| Area | 800 | Expedition | Conference | ABI | |
| Notes | MV;SIAI | Approved | no | ||
| Call Number | IAM @ iam @ BSV2011d | Serial | 1698 | ||
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| Author | Jorge Bernal; F. Javier Sanchez; Fernando Vilariño | ||||
| Title | Depth of Valleys Accumulation Algorithm for Object Detection | Type | Conference Article | ||
| Year | 2011 | Publication | 14th Congrès Català en Intel·ligencia Artificial | Abbreviated Journal | |
| Volume | 1 | Issue | 1 | Pages | 71-80 |
| Keywords | Object Recognition, Object Region Identification, Image Analysis, Image Processing | ||||
| Abstract | This work aims at detecting in which regions the objects in the image are by using information about the intensity of valleys, which appear to surround ob- jects in images where the source of light is in the line of direction than the camera. We present our depth of valleys accumulation method, which consists of two stages: first, the definition of the depth of valleys image which combines the output of a ridges and valleys detector with the morphological gradient to measure how deep is a point inside a valley and second, an algorithm that denotes points of the image as interior to objects those which are inside complete or incomplete boundaries in the depth of valleys image. To evaluate the performance of our method we have tested it on several application domains. Our results on object region identification are promising, specially in the field of polyp detection in colonoscopy videos, and we also show its applicability in different areas. | ||||
| Address | Lleida | ||||
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| ISSN | ISBN | 978-1-60750-841-0 | Medium | ||
| Area | 800 | Expedition | Conference | CCIA | |
| Notes | MV;SIAI | Approved | no | ||
| Call Number | IAM @ iam @ BSV2011b | Serial | 1699 | ||
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| Author | Panagiota Spyridonos; Fernando Vilariño; Jordi Vitria; Petia Radeva; Fernando Azpiroz; Juan Malagelada | ||||
| Title | Device, system and method for automatic detection of contractile activity in an image frame | Type | Patent | ||
| Year | 2011 | Publication | US 2011/0044515 A1 | Abbreviated Journal | |
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| Abstract | A device, system and method for automatic detection of contractile activity of a body lumen in an image frame is provided, wherein image frames during contractile activity are captured and/or image frames including contractile activity are automatically detected, such as through pattern recognition and/or feature extraction to trace image frames including contractions, e.g., with wrinkle patterns. A manual procedure of annotation of contractions, e.g. tonic contractions in capsule endoscopy, may consist of the visualization of the whole video by a specialist, and the labeling of the contraction frames. Embodiments of the present invention may be suitable for implementation in an in vivo imaging system. | ||||
| Address | Pearl Cohen Zedek Latzer, LLP, 1500 Broadway 12th Floor, New York (NY) 10036 (US) | ||||
| Corporate Author | US Patent Office | Thesis | |||
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| Notes | MV;OR;MILAB;SIAI | Approved | no | ||
| Call Number | IAM @ iam @ SVV2011 | Serial | 1701 | ||
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