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Author Mariella Dimiccoli; Marc Bolaños; Estefania Talavera; Maedeh Aghaei; Stavri G. Nikolov; Petia Radeva edit   pdf
url  doi
openurl 
  Title SR-Clustering: Semantic Regularized Clustering for Egocentric Photo Streams Segmentation Type Journal Article
  Year 2017 Publication Computer Vision and Image Understanding Abbreviated Journal CVIU  
  Volume 155 Issue Pages 55-69  
  Keywords (up)  
  Abstract While wearable cameras are becoming increasingly popular, locating relevant information in large unstructured collections of egocentric images is still a tedious and time consuming processes. This paper addresses the problem of organizing egocentric photo streams acquired by a wearable camera into semantically meaningful segments. First, contextual and semantic information is extracted for each image by employing a Convolutional Neural Networks approach. Later, by integrating language processing, a vocabulary of concepts is defined in a semantic space. Finally, by exploiting the temporal coherence in photo streams, images which share contextual and semantic attributes are grouped together. The resulting temporal segmentation is particularly suited for further analysis, ranging from activity and event recognition to semantic indexing and summarization. Experiments over egocentric sets of nearly 17,000 images, show that the proposed approach outperforms state-of-the-art methods.  
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  Publisher Place of Publication Editor  
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  ISSN ISBN Medium  
  Area Expedition Conference  
  Notes MILAB; 601.235 Approved no  
  Call Number Admin @ si @ DBT2017 Serial 2714  
Permanent link to this record
 

 
Author Adriana Romero; Carlo Gatta; Gustavo Camps-Valls edit   pdf
doi  openurl
  Title Unsupervised Deep Feature Extraction for Remote Sensing Image Classification Type Journal Article
  Year 2016 Publication IEEE Transaction on Geoscience and Remote Sensing Abbreviated Journal TGRS  
  Volume 54 Issue 3 Pages 1349 - 1362  
  Keywords (up)  
  Abstract This paper introduces the use of single-layer and deep convolutional networks for remote sensing data analysis. Direct application to multi- and hyperspectral imagery of supervised (shallow or deep) convolutional networks is very challenging given the high input data dimensionality and the relatively small amount of available labeled data. Therefore, we propose the use of greedy layerwise unsupervised pretraining coupled with a highly efficient algorithm for unsupervised learning of sparse features. The algorithm is rooted on sparse representations and enforces both population and lifetime sparsity of the extracted features, simultaneously. We successfully illustrate the expressive power of the extracted representations in several scenarios: classification of aerial scenes, as well as land-use classification in very high resolution or land-cover classification from multi- and hyperspectral images. The proposed algorithm clearly outperforms standard principal component analysis (PCA) and its kernel counterpart (kPCA), as well as current state-of-the-art algorithms of aerial classification, while being extremely computationally efficient at learning representations of data. Results show that single-layer convolutional networks can extract powerful discriminative features only when the receptive field accounts for neighboring pixels and are preferred when the classification requires high resolution and detailed results. However, deep architectures significantly outperform single-layer variants, capturing increasing levels of abstraction and complexity throughout the feature hierarchy.  
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  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 0196-2892 ISBN Medium  
  Area Expedition Conference  
  Notes LAMP; 600.079;MILAB Approved no  
  Call Number Admin @ si @ RGC2016 Serial 2723  
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Author Maedeh Aghaei; Mariella Dimiccoli; Petia Radeva edit   pdf
doi  openurl
  Title Multi-face tracking by extended bag-of-tracklets in egocentric photo-streams Type Journal Article
  Year 2016 Publication Computer Vision and Image Understanding Abbreviated Journal CVIU  
  Volume 149 Issue Pages 146-156  
  Keywords (up)  
  Abstract Wearable cameras offer a hands-free way to record egocentric images of daily experiences, where social events are of special interest. The first step towards detection of social events is to track the appearance of multiple persons involved in them. In this paper, we propose a novel method to find correspondences of multiple faces in low temporal resolution egocentric videos acquired through a wearable camera. This kind of photo-stream imposes additional challenges to the multi-tracking problem with respect to conventional videos. Due to the free motion of the camera and to its low temporal resolution, abrupt changes in the field of view, in illumination condition and in the target location are highly frequent. To overcome such difficulties, we propose a multi-face tracking method that generates a set of tracklets through finding correspondences along the whole sequence for each detected face and takes advantage of the tracklets redundancy to deal with unreliable ones. Similar tracklets are grouped into the so called extended bag-of-tracklets (eBoT), which is aimed to correspond to a specific person. Finally, a prototype tracklet is extracted for each eBoT, where the occurred occlusions are estimated by relying on a new measure of confidence. We validated our approach over an extensive dataset of egocentric photo-streams and compared it to state of the art methods, demonstrating its effectiveness and robustness.  
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  Area Expedition Conference  
  Notes MILAB; Approved no  
  Call Number Admin @ si @ ADR2016b Serial 2742  
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Author Onur Ferhat; Fernando Vilariño edit   pdf
doi  openurl
  Title Low Cost Eye Tracking: The Current Panorama Type Journal Article
  Year 2016 Publication Computational Intelligence and Neuroscience Abbreviated Journal CIN  
  Volume Issue Pages Article ID 8680541  
  Keywords (up)  
  Abstract Despite the availability of accurate, commercial gaze tracker devices working with infrared (IR) technology, visible light gaze tracking constitutes an interesting alternative by allowing scalability and removing hardware requirements. Over the last years, this field has seen examples of research showing performance comparable to the IR alternatives. In this work, we survey the previous work on remote, visible light gaze trackers and analyze the explored techniques from various perspectives such as calibration strategies, head pose invariance, and gaze estimation techniques. We also provide information on related aspects of research such as public datasets to test against, open source projects to build upon, and gaze tracking services to directly use in applications. With all this information, we aim to provide the contemporary and future researchers with a map detailing previously explored ideas and the required tools.  
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  Area Expedition Conference  
  Notes MV; 605.103; 600.047; 600.097;SIAI Approved no  
  Call Number Admin @ si @ FeV2016 Serial 2744  
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Author C. Alejandro Parraga; Arash Akbarinia edit   pdf
doi  openurl
  Title NICE: A Computational Solution to Close the Gap from Colour Perception to Colour Categorization Type Journal Article
  Year 2016 Publication PLoS One Abbreviated Journal Plos  
  Volume 11 Issue 3 Pages e0149538  
  Keywords (up)  
  Abstract The segmentation of visible electromagnetic radiation into chromatic categories by the human visual system has been extensively studied from a perceptual point of view, resulting in several colour appearance models. However, there is currently a void when it comes to relate these results to the physiological mechanisms that are known to shape the pre-cortical and cortical visual pathway. This work intends to begin to fill this void by proposing a new physiologically plausible model of colour categorization based on Neural Isoresponsive Colour Ellipsoids (NICE) in the cone-contrast space defined by the main directions of the visual signals entering the visual cortex. The model was adjusted to fit psychophysical measures that concentrate on the categorical boundaries and are consistent with the ellipsoidal isoresponse surfaces of visual cortical neurons. By revealing the shape of such categorical colour regions, our measures allow for a more precise and parsimonious description, connecting well-known early visual processing mechanisms to the less understood phenomenon of colour categorization. To test the feasibility of our method we applied it to exemplary images and a popular ground-truth chart obtaining labelling results that are better than those of current state-of-the-art algorithms.  
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  ISSN ISBN Medium  
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  Notes NEUROBIT; 600.068 Approved no  
  Call Number Admin @ si @ PaA2016a Serial 2747  
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Author Gloria Fernandez Esparrach; Jorge Bernal; Maria Lopez Ceron; Henry Cordova; Cristina Sanchez Montes; Cristina Rodriguez de Miguel; F. Javier Sanchez edit   pdf
doi  openurl
  Title Exploring the clinical potential of an automatic colonic polyp detection method based on the creation of energy maps Type Journal Article
  Year 2016 Publication Endoscopy Abbreviated Journal END  
  Volume 48 Issue 9 Pages 837-842  
  Keywords (up)  
  Abstract Background and aims: Polyp miss-rate is a drawback of colonoscopy that increases significantly in small polyps. We explored the efficacy of an automatic computer vision method for polyp detection.
Methods: Our method relies on a model that defines polyp boundaries as valleys of image intensity. Valley information is integrated into energy maps which represent the likelihood of polyp presence.
Results: In 24 videos containing polyps from routine colonoscopies, all polyps were detected in at least one frame. Mean values of the maximum of energy map were higher in frames with polyps than without (p<0.001). Performance improved in high quality frames (AUC= 0.79, 95%CI: 0.70-0.87 vs 0.75, 95%CI: 0.66-0.83). Using 3.75 as maximum threshold value, sensitivity and specificity for detection of polyps were 70.4% (95%CI: 60.3-80.8) and 72.4% (95%CI: 61.6-84.6), respectively.
Conclusion: Energy maps showed a good performance for colonic polyp detection. This indicates a potential applicability in clinical practice.
 
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  Notes MV; Approved no  
  Call Number Admin @ si @FBL2016 Serial 2778  
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Author Francesco Ciompi; Simone Balocco; Juan Rigla; Xavier Carrillo; J. Mauri; Petia Radeva edit  doi
openurl 
  Title Computer-Aided Detection of Intra-Coronary Stent in Intravascular Ultrasound Sequences Type Journal Article
  Year 2016 Publication Medical Physics Abbreviated Journal MP  
  Volume 43 Issue 10 Pages  
  Keywords (up)  
  Abstract Purpose: An intraluminal coronary stent is a metal mesh tube deployed in a stenotic artery during Percutaneous Coronary Intervention (PCI), in order to prevent acute vessel occlusion. The identication of struts location and the denition of the stent shape are relevant for PCI planning 15 and for patient follow-up. We present a fully-automatic framework for Computer-Aided Detection
(CAD) of intra-coronary stents in Intravascular Ultrasound (IVUS) image sequences. The CAD system is able to detect stent struts and estimate the stent shape.

Methods: The proposed CAD uses machine learning to provide a comprehensive interpretation of the local structure of the vessel by means of semantic classication. The output of the classication 20 stage is then used to detect struts and to estimate the stent shape. The proposed approach is validated using a multi-centric data-set of 1,015 images from 107 IVUS sequences containing both metallic and bio-absorbable stents.

Results: The method was able to detect structs in both metallic stents with an overall F-measure of 77.7% and a mean distance of 0.15 mm from manually annotated struts, and in bio-absorbable 25 stents with an overall F-measure of 77.4% and a mean distance of 0.09 mm from manually annotated struts.

Conclusions: The results are close to the inter-observer variability and suggest that the system has the potential of being used as method for aiding percutaneous interventions.
 
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  ISSN ISBN Medium  
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  Notes MILAB Approved no  
  Call Number Admin @ si @ CBR2016 Serial 2819  
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Author Jean-Pascal Jacob; Mariella Dimiccoli; L. Moisan edit   pdf
url  openurl
  Title Active skeleton for bacteria modelling Type Journal Article
  Year 2017 Publication Computer Methods in Biomechanics and Biomedical Engineering: Imaging and Visualization Abbreviated Journal CMBBE  
  Volume 5 Issue 4 Pages 274-286  
  Keywords (up)  
  Abstract The investigation of spatio-temporal dynamics of bacterial cells and their molecular components requires automated image analysis tools to track cell shape properties and molecular component locations inside the cells. In the study of bacteria aging, the molecular components of interest are protein aggregates accumulated near bacteria boundaries. This particular location makes very ambiguous the correspondence between aggregates and cells, since computing accurately bacteria boundaries in phase-contrast time-lapse imaging is a challenging task. This paper proposes an active skeleton formulation for bacteria modelling which provides several advantages: an easy computation of shape properties (perimeter, length, thickness and orientation), an improved boundary accuracy in noisy images and a natural bacteria-centred coordinate system that permits the intrinsic location of molecular components inside the cell. Starting from an initial skeleton estimate, the medial axis of the bacterium is obtained by minimising an energy function which incorporates bacteria shape constraints. Experimental results on biological images and comparative evaluation of the performances validate the proposed approach for modelling cigar-shaped bacteria like Escherichia coli. The Image-J plugin of the proposed method can be found online at http://fluobactracker.inrialpes.fr.  
  Address  
  Corporate Author Thesis  
  Publisher Taylor & Francis Group Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN ISBN Medium  
  Area Expedition Conference  
  Notes MILAB; Approved no  
  Call Number Admin @ si @JDM2017 Serial 2784  
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Author A.S. Coquel; Jean-Pascal Jacob; M. Primet; A. Demarez; Mariella Dimiccoli; T. Julou; L. Moisan; A. Lindner; H. Berry edit   pdf
doi  openurl
  Title Localization of protein aggregation in Escherichia coli is governed by diffusion and nucleoid macromolecular crowding effect Type Journal Article
  Year 2013 Publication Plos Computational Biology Abbreviated Journal PCB  
  Volume 9 Issue 4 Pages  
  Keywords (up)  
  Abstract Aggregates of misfolded proteins are a hallmark of many age-related diseases. Recently, they have been linked to aging of Escherichia coli (E. coli) where protein aggregates accumulate at the old pole region of the aging bacterium. Because of the potential of E. coli as a model organism, elucidating aging and protein aggregation in this bacterium may pave the way to significant advances in our global understanding of aging. A first obstacle along this path is to decipher the mechanisms by which protein aggregates are targeted to specific intercellular locations. Here, using an integrated approach based on individual-based modeling, time-lapse fluorescence microscopy and automated image analysis, we show that the movement of aging-related protein aggregates in E. coli is purely diffusive (Brownian). Using single-particle tracking of protein aggregates in live E. coli cells, we estimated the average size and diffusion constant of the aggregates. Our results provide evidence that the aggregates passively diffuse within the cell, with diffusion constants that depend on their size in agreement with the Stokes-Einstein law. However, the aggregate displacements along the cell long axis are confined to a region that roughly corresponds to the nucleoid-free space in the cell pole, thus confirming the importance of increased macromolecular crowding in the nucleoids. We thus used 3D individual-based modeling to show that these three ingredients (diffusion, aggregation and diffusion hindrance in the nucleoids) are sufficient and necessary to reproduce the available experimental data on aggregate localization in the cells. Taken together, our results strongly support the hypothesis that the localization of aging-related protein aggregates in the poles of E. coli results from the coupling of passive diffusion-aggregation with spatially non-homogeneous macromolecular crowding. They further support the importance of “soft” intracellular structuring (based on macromolecular crowding) in diffusion-based protein localization in E. coli.  
  Address  
  Corporate Author Thesis  
  Publisher Place of Publication Editor : Stanislav Shvartsman, Princeton University, United States of America  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
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  ISSN ISBN Medium  
  Area Expedition Conference  
  Notes Approved no  
  Call Number Admin @ si @CJP2013 Serial 2786  
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Author Sumit K. Banchhor; Tadashi Araki; Narendra D. Londhe; Nobutaka Ikeda; Petia Radeva; Ayman El-Baz; Luca Saba; Andrew Nicolaides; Shoaib Shafique; John R. Laird; Jasjit S. Suri edit  doi
openurl 
  Title Five multiresolution-based calcium volume measurement techniques from coronary IVUS videos: A comparative approach Type Journal Article
  Year 2016 Publication Computer Methods and Programs in Biomedicine Abbreviated Journal CMPB  
  Volume 134 Issue Pages 237-258  
  Keywords (up)  
  Abstract BACKGROUND AND OBJECTIVE:
Fast intravascular ultrasound (IVUS) video processing is required for calcium volume computation during the planning phase of percutaneous coronary interventional (PCI) procedures. Nonlinear multiresolution techniques are generally applied to improve the processing time by down-sampling the video frames.
METHODS:
This paper presents four different segmentation methods for calcium volume measurement, namely Threshold-based, Fuzzy c-Means (FCM), K-means, and Hidden Markov Random Field (HMRF) embedded with five different kinds of multiresolution techniques (bilinear, bicubic, wavelet, Lanczos, and Gaussian pyramid). This leads to 20 different kinds of combinations. IVUS image data sets consisting of 38,760 IVUS frames taken from 19 patients were collected using 40 MHz IVUS catheter (Atlantis® SR Pro, Boston Scientific®, pullback speed of 0.5 mm/sec.). The performance of these 20 systems is compared with and without multiresolution using the following metrics: (a) computational time; (b) calcium volume; (c) image quality degradation ratio; and (d) quality assessment ratio.
RESULTS:
Among the four segmentation methods embedded with five kinds of multiresolution techniques, FCM segmentation combined with wavelet-based multiresolution gave the best performance. FCM and wavelet experienced the highest percentage mean improvement in computational time of 77.15% and 74.07%, respectively. Wavelet interpolation experiences the highest mean precision-of-merit (PoM) of 94.06 ± 3.64% and 81.34 ± 16.29% as compared to other multiresolution techniques for volume level and frame level respectively. Wavelet multiresolution technique also experiences the highest Jaccard Index and Dice Similarity of 0.7 and 0.8, respectively. Multiresolution is a nonlinear operation which introduces bias and thus degrades the image. The proposed system also provides a bias correction approach to enrich the system, giving a better mean calcium volume similarity for all the multiresolution-based segmentation methods. After including the bias correction, bicubic interpolation gives the largest increase in mean calcium volume similarity of 4.13% compared to the rest of the multiresolution techniques. The system is automated and can be adapted in clinical settings.
CONCLUSIONS:
We demonstrated the time improvement in calcium volume computation without compromising the quality of IVUS image. Among the 20 different combinations of multiresolution with calcium volume segmentation methods, the FCM embedded with wavelet-based multiresolution gave the best performance.
 
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  Series Editor Series Title Abbreviated Series Title  
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  Notes MILAB; Approved no  
  Call Number Admin @ si @ BAL2016 Serial 2830  
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Author Xavier Perez Sala; Fernando De la Torre; Laura Igual; Sergio Escalera; Cecilio Angulo edit  url
openurl 
  Title Subspace Procrustes Analysis Type Journal Article
  Year 2017 Publication International Journal of Computer Vision Abbreviated Journal IJCV  
  Volume 121 Issue 3 Pages 327–343  
  Keywords (up)  
  Abstract Procrustes Analysis (PA) has been a popular technique to align and build 2-D statistical models of shapes. Given a set of 2-D shapes PA is applied to remove rigid transformations. Then, a non-rigid 2-D model is computed by modeling (e.g., PCA) the residual. Although PA has been widely used, it has several limitations for modeling 2-D shapes: occluded landmarks and missing data can result in local minima solutions, and there is no guarantee that the 2-D shapes provide a uniform sampling of the 3-D space of rotations for the object. To address previous issues, this paper proposes Subspace PA (SPA). Given several
instances of a 3-D object, SPA computes the mean and a 2-D subspace that can simultaneously model all rigid and non-rigid deformations of the 3-D object. We propose a discrete (DSPA) and continuous (CSPA) formulation for SPA, assuming that 3-D samples of an object are provided. DSPA extends the traditional PA, and produces unbiased 2-D models by uniformly sampling different views of the 3-D object. CSPA provides a continuous approach to uniformly sample the space of 3-D rotations, being more efficient in space and time. Experiments using SPA to learn 2-D models of bodies from motion capture data illustrate the benefits of our approach.
 
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  Notes MILAB; HuPBA; no proj Approved no  
  Call Number Admin @ si @ PTI2017 Serial 2841  
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Author Frederic Sampedro; Anna Domenech; Sergio Escalera; Ignasi Carrio edit  doi
openurl 
  Title Computing quantitative indicators of structural renal damage in pediatric DMSA scans Type Journal Article
  Year 2017 Publication Revista Española de Medicina Nuclear e Imagen Molecular Abbreviated Journal REMNIM  
  Volume 36 Issue 2 Pages 72-77  
  Keywords (up)  
  Abstract OBJECTIVES:
The proposal and implementation of a computational framework for the quantification of structural renal damage from 99mTc-dimercaptosuccinic acid (DMSA) scans. The aim of this work is to propose, implement, and validate a computational framework for the quantification of structural renal damage from DMSA scans and in an observer-independent manner.
MATERIALS AND METHODS:
From a set of 16 pediatric DMSA-positive scans and 16 matched controls and using both expert-guided and automatic approaches, a set of image-derived quantitative indicators was computed based on the relative size, intensity and histogram distribution of the lesion. A correlation analysis was conducted in order to investigate the association of these indicators with other clinical data of interest in this scenario, including C-reactive protein (CRP), white cell count, vesicoureteral reflux, fever, relative perfusion, and the presence of renal sequelae in a 6-month follow-up DMSA scan.
RESULTS:
A fully automatic lesion detection and segmentation system was able to successfully classify DMSA-positive from negative scans (AUC=0.92, sensitivity=81% and specificity=94%). The image-computed relative size of the lesion correlated with the presence of fever and CRP levels (p<0.05), and a measurement derived from the distribution histogram of the lesion obtained significant performance results in the detection of permanent renal damage (AUC=0.86, sensitivity=100% and specificity=75%).
CONCLUSIONS:
The proposal and implementation of a computational framework for the quantification of structural renal damage from DMSA scans showed a promising potential to complement visual diagnosis and non-imaging indicators.
 
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  Notes HuPBA;MILAB; no menciona Approved no  
  Call Number Admin @ si @ SDE2017 Serial 2842  
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Author Mikkel Thogersen; Sergio Escalera; Jordi Gonzalez; Thomas B. Moeslund edit  url
openurl 
  Title Segmentation of RGB-D Indoor scenes by Stacking Random Forests and Conditional Random Fields Type Journal Article
  Year 2016 Publication Pattern Recognition Letters Abbreviated Journal PRL  
  Volume 80 Issue Pages 208–215  
  Keywords (up)  
  Abstract This paper proposes a technique for RGB-D scene segmentation using Multi-class
Multi-scale Stacked Sequential Learning (MMSSL) paradigm. Following recent trends in state-of-the-art, a base classifier uses an initial SLIC segmentation to obtain superpixels which provide a diminution of data while retaining object boundaries. A series of color and depth features are extracted from the superpixels, and are used in a Conditional Random Field (CRF) to predict superpixel labels. Furthermore, a Random Forest (RF) classifier using random offset features is also used as an input to the CRF, acting as an initial prediction. As a stacked classifier, another Random Forest is used acting on a spatial multi-scale decomposition of the CRF confidence map to correct the erroneous labels assigned by the previous classifier. The model is tested on the popular NYU-v2 dataset.
The approach shows that simple multi-modal features with the power of the MMSSL
paradigm can achieve better performance than state of the art results on the same dataset.
 
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  Notes HuPBA; ISE;MILAB; 600.098; 600.119 Approved no  
  Call Number Admin @ si @ TEG2016 Serial 2843  
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Author Jose Garcia-Rodriguez; Isabelle Guyon; Sergio Escalera; Alexandra Psarrou; Andrew Lewis; Miguel Cazorla edit  doi
openurl 
  Title Editorial: Special Issue on Computational Intelligence for Vision and Robotics Type Journal Article
  Year 2017 Publication Neural Computing and Applications Abbreviated Journal Neural Computing and Applications  
  Volume 28 Issue 5 Pages 853–854  
  Keywords (up)  
  Abstract  
  Address  
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  Notes HuPBA;MILAB; no menciona Approved no  
  Call Number Admin @ si @ GGE2017 Serial 2845  
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Author Sergio Escalera; Jordi Gonzalez; Xavier Baro; Jamie Shotton edit  doi
openurl 
  Title Guest Editor Introduction to the Special Issue on Multimodal Human Pose Recovery and Behavior Analysis Type Journal Article
  Year 2016 Publication IEEE Transactions on Pattern Analysis and Machine Intelligence Abbreviated Journal TPAMI  
  Volume 28 Issue Pages 1489 - 1491  
  Keywords (up)  
  Abstract The sixteen papers in this special section focus on human pose recovery and behavior analysis (HuPBA). This is one of the most challenging topics in computer vision, pattern analysis, and machine learning. It is of critical importance for application areas that include gaming, computer interaction, human robot interaction, security, commerce, assistive technologies and rehabilitation, sports, sign language recognition, and driver assistance technology, to mention just a few. In essence, HuPBA requires dealing with the articulated nature of the human body, changes in appearance due to clothing, and the inherent problems of clutter scenes, such as background artifacts, occlusions, and illumination changes. These papers represent the most recent research in this field, including new methods considering still images, image sequences, depth data, stereo vision, 3D vision, audio, and IMUs, among others.  
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  Area Expedition Conference  
  Notes HuPBA; ISE;MV; Approved no  
  Call Number Admin @ si @ Serial 2851  
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